Contacts of the helix formed by residues 1066 - 1103 (chain N) in PDB entry 4G7H
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR1066 (chain N).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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500M ASN* 4.7 18.2 - - - +
906M PHE* 3.3 7.0 - - - -
1059N SER* 4.8 3.1 - - - +
1065N LEU* 1.3 75.8 - - - +
1067N VAL* 1.3 65.6 + - - +
1068N LEU* 3.7 8.5 + - - +
1069N GLU* 2.8 46.2 + - - +
1070N TYR* 2.9 19.2 + - - +
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Residues in contact with VAL1067 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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435M TYR* 4.1 9.4 - - + +
498M GLN* 3.2 24.2 - - + +
499M ALA* 5.7 3.1 - - + +
500M ASN* 5.3 11.6 - - + +
533M ASP* 5.9 0.2 - - - +
536M PRO* 4.6 20.2 - - + -
539M VAL* 3.6 38.4 - - + -
540M PHE* 4.6 5.9 - - + -
906M PHE* 3.3 30.7 - - + -
1066N THR* 1.3 72.6 - - - +
1068N LEU* 1.3 55.3 + - - +
1070N TYR* 3.3 2.9 + - - +
1071N PHE* 2.9 27.5 + - - +
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Residues in contact with LEU1068 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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435M TYR* 4.5 7.2 - - + -
498M GLN* 3.7 28.3 - - + +
514M VAL* 3.6 30.1 - - + -
515M ALA 4.7 0.7 - - - +
516M ARG* 3.8 23.6 - - + -
519M GLY 5.3 2.2 - - - +
521M PRO* 3.6 29.6 - - + -
1066N THR* 3.2 8.0 + - - +
1067N VAL* 1.3 79.9 - - - +
1069N GLU* 1.3 58.6 + - + +
1071N PHE* 3.3 6.7 + - + +
1072N ILE* 2.9 46.0 + - + +
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Residues in contact with GLU1069 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1056N PRO 4.5 3.1 - - - +
1057N VAL* 3.4 33.3 - - + +
1058N ARG* 3.1 27.5 + - - +
1059N SER* 2.9 24.3 + - - -
1065N LEU* 3.4 4.5 - - + -
1066N THR* 2.8 46.8 + - - +
1068N LEU* 1.3 75.4 - - + +
1070N TYR* 1.3 59.5 + - - +
1072N ILE* 3.1 9.2 + - - +
1073N SER* 2.6 33.2 + - - -
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Residues in contact with TYR1070 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
440M PRO* 5.9 0.4 - - + -
441M VAL* 4.0 22.4 - - + -
540M PHE* 3.9 22.7 - + + -
550M LEU* 3.4 22.4 - - + +
551M GLU* 4.4 4.7 - - - -
553M ASP 2.7 29.1 + - - -
555M ALA* 3.4 28.0 - - + -
558M ALA* 3.6 13.7 - - - +
906M PHE* 3.6 20.9 - + + -
1061N PHE* 5.2 3.4 - + - -
1065N LEU* 3.8 22.5 - - + +
1066N THR 2.9 11.9 + - - +
1067N VAL 3.5 8.3 - - - +
1069N GLU* 1.3 76.2 - - - +
1071N PHE* 1.3 58.6 + - - +
1073N SER* 3.1 6.9 + - - -
1074N SER* 3.0 27.5 + - - -
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Residues in contact with PHE1071 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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430M VAL* 4.2 17.3 - - + -
431M HIS 3.8 11.7 - - - -
432M ARG* 3.6 30.1 - - + -
434M HIS* 4.4 3.1 - - + -
435M TYR* 3.7 49.6 - + + -
440M PRO* 4.1 20.9 - - + -
516M ARG* 6.2 0.2 - - - -
539M VAL* 4.1 11.0 - - + -
540M PHE* 5.6 0.8 - - - -
1067N VAL 2.9 17.6 + - - +
1068N LEU* 3.7 7.9 - - + +
1070N TYR* 1.3 73.4 - - - +
1072N ILE* 1.3 72.8 + - + +
1074N SER* 2.3 29.8 + - - -
1075N HIS* 3.8 22.6 + - - -
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Residues in contact with ILE1072 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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519M GLY 5.1 3.6 - - - +
521M PRO* 4.5 15.0 - - + -
1045N MET* 3.5 25.3 - - + +
1046N GLN 4.4 0.5 - - - +
1053N PHE* 3.5 56.7 - - + -
1055N VAL 5.2 4.9 - - - +
1057N VAL* 4.7 4.3 - - + -
1068N LEU* 2.9 37.7 + - + +
1069N GLU* 3.3 11.0 - - - +
1071N PHE* 1.3 80.3 - - + +
1073N SER* 1.3 60.4 + - - +
1075N HIS* 3.4 23.7 + - - +
1076N GLY 4.6 0.7 + - - -
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Residues in contact with SER1073 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1042N ARG* 3.5 29.3 + - - -
1045N MET* 3.8 18.3 - - - +
1057N VAL* 3.8 12.6 - - - +
1065N LEU* 4.1 2.3 - - - +
1069N GLU 2.6 22.1 + - - -
1070N TYR* 3.1 10.0 + - - -
1072N ILE* 1.3 72.9 - - - +
1074N SER* 1.3 66.6 + - - +
1075N HIS 3.1 2.7 - - - -
1076N GLY* 3.1 6.1 + - - -
1077N ALA* 3.1 20.4 + - - +
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Residues in contact with SER1074 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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430M VAL* 4.2 8.5 - - - +
440M PRO* 3.6 35.7 - - - +
441M VAL* 5.9 1.3 - - - -
555M ALA* 5.2 7.6 - - - -
1070N TYR* 3.0 13.9 + - - -
1071N PHE* 2.3 36.1 + - - -
1073N SER* 1.3 77.0 - - - +
1075N HIS* 1.3 62.5 + - - +
1077N ALA* 3.2 9.4 + - - +
1078N ARG* 2.9 26.3 + - - +
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Residues in contact with HIS1075 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
429M ASP* 4.7 2.8 - - - +
430M VAL* 2.8 49.5 + - + +
432M ARG* 4.1 13.9 - - + +
1046N GLN 3.6 14.1 - - - +
1047N LYS 4.5 0.4 - - - -
1048N PRO* 3.6 24.5 - - + +
1053N PHE* 3.9 27.0 - + - -
1071N PHE* 3.8 29.7 + + - -
1072N ILE* 3.4 20.1 - - - +
1073N SER 3.1 0.4 - - - -
1074N SER* 1.3 77.1 - - - +
1076N GLY* 1.3 57.7 + - - +
1078N ARG* 3.8 2.3 - - - +
1079N LYS* 2.9 33.2 + - - +
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Residues in contact with GLY1076 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1045N MET* 4.6 6.0 - - - +
1046N GLN* 4.2 23.6 + - - -
1072N ILE 4.6 0.8 + - - -
1073N SER 3.1 7.5 + - - -
1075N HIS* 1.3 79.5 - - - +
1077N ALA* 1.3 62.5 + - - +
1079N LYS* 3.3 5.5 + - - +
1080N GLY* 2.9 21.0 + - - -
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Residues in contact with ALA1077 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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555M ALA* 4.2 19.1 - - + -
556M ASN* 4.0 33.6 - - - +
1045N MET* 5.5 0.4 - - - +
1073N SER 3.1 11.2 + - - +
1074N SER* 3.2 9.8 + - - +
1076N GLY* 1.3 76.7 - - - +
1078N ARG* 1.3 57.3 + - - +
1080N GLY* 3.1 2.1 + - - -
1081N GLY* 3.0 23.7 + - - -
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Residues in contact with ARG1078 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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428M ARG* 2.7 48.8 + - + +
429M ASP* 4.0 6.2 + - - -
430M VAL* 3.6 32.9 - - + +
434M HIS* 5.5 2.4 + - - -
439M CYS 4.2 6.9 + - - -
440M PRO 3.4 27.6 + - - +
443M THR* 3.5 34.4 - - - +
449M ILE* 3.7 23.0 - - - +
450M GLY* 3.5 13.4 + - - +
453M THR* 4.5 8.9 - - - +
1074N SER 2.9 16.2 + - - +
1075N HIS 3.8 2.9 - - - +
1077N ALA* 1.3 73.7 - - - +
1079N LYS* 1.3 68.2 + - - +
1081N GLY* 3.1 3.2 + - - +
1082N ALA* 2.9 23.6 + - + +
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Residues in contact with LYS1079 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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425M PHE* 3.7 32.5 - - + +
429M ASP* 3.3 32.9 + - - +
1046N GLN* 6.5 0.2 - - + -
1047N LYS 5.2 1.6 - - - +
1048N PRO* 3.3 33.0 + - + +
1075N HIS 2.9 17.8 + - - +
1076N GLY* 3.8 5.8 - - - +
1078N ARG* 1.3 76.2 - - - +
1080N GLY* 1.3 57.9 + - - +
1082N ALA* 3.6 4.9 + - - +
1083N ASP* 2.9 30.9 + - - +
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Residues in contact with GLY1080 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1076N GLY 2.9 14.2 + - - -
1077N ALA 3.5 4.9 - - - -
1079N LYS* 1.3 75.7 - - - +
1081N GLY* 1.3 62.3 + - - +
1083N ASP* 3.1 11.1 + - - +
1084N THR* 2.9 25.9 + - - -
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Residues in contact with GLY1081 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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446M GLY 5.9 0.3 + - - -
449M ILE* 3.7 22.2 - - - +
556M ASN* 5.4 3.0 + - - -
1077N ALA 3.0 13.3 + - - -
1078N ARG 3.1 2.6 + - - -
1080N GLY* 1.3 76.0 - - - +
1082N ALA* 1.3 55.6 + - - +
1084N THR* 3.3 8.5 + - - -
1085N ALA* 2.9 28.4 + - - +
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Residues in contact with ALA1082 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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425M PHE* 4.2 17.3 - - + -
428M ARG* 4.2 31.4 - - + +
449M ILE* 3.9 14.4 - - + +
1078N ARG* 2.9 18.3 + - + +
1079N LYS* 4.0 4.0 - - - +
1081N GLY* 1.3 72.8 - - - +
1083N ASP* 1.3 67.1 + - - +
1085N ALA* 3.7 0.8 - - - +
1086N LEU* 2.9 32.3 + - + +
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Residues in contact with ASP1083 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
425M PHE* 3.8 21.7 - - + -
1079N LYS 2.9 20.0 + - - +
1080N GLY* 3.2 9.7 - - - +
1082N ALA* 1.3 77.5 - - - +
1084N THR* 1.3 55.8 + - - +
1086N LEU* 3.9 1.4 - - - +
1087N ARG* 2.8 53.4 + - - +
1237N THR* 4.9 8.0 + - - +
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Residues in contact with THR1084 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1080N GLY 2.9 13.9 + - - -
1081N GLY* 3.5 11.0 - - - -
1082N ALA 3.3 0.2 - - - -
1083N ASP* 1.3 76.3 - - - +
1085N ALA* 1.3 66.6 + - - +
1087N ARG* 3.0 27.1 + - - +
1088N THR* 3.0 38.5 + - + +
1234N THR* 5.9 1.3 - - - +
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Residues in contact with ALA1085 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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446M GLY* 3.6 33.9 - - - +
447M ALA* 4.4 9.5 - - - +
449M ILE* 4.0 8.1 - - + -
1081N GLY 2.9 17.2 + - - +
1082N ALA* 3.7 4.3 - - - +
1084N THR* 1.3 78.8 - - - +
1086N LEU* 1.3 69.1 + - + +
1088N THR* 3.3 17.6 + - - -
1089N ALA* 4.4 4.0 + - - +
14Q G 5.0 3.4 - - - +
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Residues in contact with LEU1086 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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420M ARG 5.8 0.7 - - - +
423M ALA 4.6 2.2 - - - +
424M GLY* 4.5 17.0 - - - -
425M PHE* 3.4 37.9 - - + -
428M ARG* 3.7 31.6 - - - +
1082N ALA* 2.9 20.3 + - - +
1083N ASP 4.0 2.2 - - - +
1085N ALA* 1.3 80.4 - - + +
1087N ARG* 1.3 67.4 + - - +
1089N ALA* 3.5 10.5 + - - +
1090N ASP* 3.4 19.6 + - - +
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Residues in contact with ARG1087 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1083N ASP* 2.8 63.8 + - - +
1084N THR* 3.5 25.6 + - - +
1086N LEU* 1.3 77.7 - - - +
1088N THR* 1.3 64.2 + - - +
1090N ASP* 2.9 21.2 + - - +
1091N SER* 2.9 11.3 + - - -
1233N GLY 4.1 10.3 - - - +
1234N THR* 2.8 33.0 + - + -
1235N GLN* 4.9 1.8 - - - +
1236N LEU 3.1 28.0 + - - -
1237N THR* 4.4 11.5 + - - +
1256N LEU* 3.6 20.0 - - + -
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Residues in contact with THR1088 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1084N THR* 3.0 27.5 + - + +
1085N ALA* 3.3 15.1 + - - -
1087N ARG* 1.3 76.4 - - + +
1089N ALA* 1.3 58.2 + - - +
1091N SER* 3.8 1.8 - - - -
1092N GLY* 2.9 22.0 + - - -
1234N THR* 3.6 30.0 - - + +
14Q G 3.5 49.2 + - + +
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Residues in contact with ALA1089 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1085N ALA 5.0 3.4 - - - +
1086N LEU* 3.5 10.4 + - - +
1087N ARG 3.1 0.6 - - - -
1088N THR* 1.3 77.8 + - - +
1090N ASP* 1.3 64.3 + - - +
1092N GLY* 3.2 0.5 + - - -
1093N TYR* 2.9 31.0 + - - +
13Q A 4.1 14.4 - - + +
14Q G 3.7 39.0 - - + +
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Residues in contact with ASP1090 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1086N LEU 3.4 15.5 - - - +
1087N ARG* 2.9 10.0 + - - +
1089N ALA* 1.3 79.5 - - - +
1091N SER* 1.3 64.0 + - - +
1093N TYR* 3.7 5.9 - - - +
1094N LEU* 2.9 24.8 + - - +
1256N LEU* 4.0 13.9 - - + +
1257N PRO* 6.1 1.0 - - - +
1260N ILE* 4.3 17.3 - - + +
13Q A 5.7 2.9 - - - +
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Residues in contact with SER1091 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1087N ARG 2.9 15.2 + - - -
1088N THR 3.8 4.5 - - - -
1090N ASP* 1.3 77.6 - - - +
1092N GLY* 1.3 62.5 + - - +
1094N LEU* 3.2 7.8 + - - +
1095N THR* 2.9 28.9 + - - -
1230N GLY* 3.7 7.6 + - - -
1233N GLY* 3.3 37.1 - - - -
1234N THR* 3.5 12.3 + - - +
1256N LEU* 3.9 11.5 - - - +
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Residues in contact with GLY1092 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1035M MET* 6.3 2.5 - - - -
1038M TRP* 5.7 0.3 - - - -
1088N THR 2.9 13.1 + - - -
1089N ALA 3.2 0.4 + - - -
1091N SER* 1.3 76.9 - - - +
1093N TYR* 1.3 61.6 + - - +
1095N THR* 3.2 7.3 + - - -
1096N ARG* 3.0 22.2 + - - +
14Q G 3.2 30.7 - - - -
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Residues in contact with TYR1093 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1089N ALA 2.9 17.1 + - - +
1090N ASP* 3.7 6.3 - - - +
1092N GLY* 1.3 71.7 - - - +
1094N LEU* 1.3 64.8 + - - +
1096N ARG* 3.1 15.8 + - + +
1097N LYS* 3.0 56.4 + - + +
1425N THR* 5.3 1.2 - - - +
1440N PHE* 5.2 4.9 - + - -
1441N GLN* 2.2 35.2 + - + -
12Q G 3.7 22.6 + - + +
13Q A 3.7 46.0 - - - -
14Q G 3.9 6.2 - - - -
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Residues in contact with LEU1094 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1090N ASP 2.9 14.4 + - - +
1091N SER* 3.4 10.1 - - - +
1093N TYR* 1.3 75.2 - - - +
1095N THR* 1.3 65.0 + - - +
1097N LYS* 2.9 33.9 + - + +
1098N LEU* 2.9 40.0 + - + +
1229N ILE* 5.5 1.1 - - + +
1230N GLY* 6.0 2.7 - - - -
1233N GLY* 6.3 0.9 - - - -
1256N LEU* 4.1 11.7 - - + -
1259N VAL* 3.8 27.6 - - + -
1260N ILE* 4.0 25.4 - - + -
1263N PHE* 4.3 19.1 - - + -
1264N GLU* 5.7 0.9 - - + +
1356N TYR* 5.0 4.7 - - - +
1424N VAL* 5.1 1.3 - - + -
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Residues in contact with THR1095 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1035M MET* 5.6 5.8 - - + -
1038M TRP* 4.1 19.7 - - + -
708N LEU* 5.1 5.6 - - + +
1091N SER* 2.9 14.7 + - - -
1092N GLY* 3.5 10.4 - - - -
1094N LEU* 1.3 76.3 - - - +
1096N ARG* 1.3 57.8 + - - +
1098N LEU* 3.2 10.9 + - - +
1099N VAL* 2.9 32.7 + - + +
1226N ALA 4.3 16.8 - - - +
1227N GLN* 5.1 4.7 - - + -
1230N GLY* 3.3 26.5 + - - -
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Residues in contact with ARG1096 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1034M GLU* 3.0 29.6 + - - -
1038M TRP* 4.0 22.3 - - + -
615N ARG* 3.2 56.9 - - - +
619N LEU* 4.7 1.6 - - - +
1092N GLY 3.0 13.1 + - - +
1093N TYR* 3.1 19.8 + - + +
1095N THR* 1.3 77.8 - - - +
1097N LYS* 1.3 61.8 + - - +
1099N VAL* 3.4 2.4 + - - +
1100N ASP* 3.0 24.3 + - + +
1439N SER 3.3 18.6 + - - -
1440N PHE* 3.5 32.1 + - + +
1441N GLN* 5.1 2.0 - - - +
1463N LYS* 4.8 3.0 - - - +
13Q A 4.5 4.4 + - - -
14Q G 6.1 1.1 - - - -
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Residues in contact with LYS1097 (chain N).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1093N TYR* 3.0 59.2 + - + +
1094N LEU* 2.9 20.1 + - + +
1096N ARG* 1.3 75.3 - - - +
1098N LEU* 1.3 59.2 + - - +
1100N ASP* 3.1 3.3 + - - +
1101N VAL* 2.9 31.2 + - - +
1260N ILE* 4.6 13.1 - - - +
1264N GLU* 3.0 33.7 + - - +
1266N ARG* 4.7 5.7 - - - +
1424N VAL* 4.1 17.6 - - + +
1425N THR* 3.7 13.0 - - - +
1428N ALA* 4.7 1.7 - - - +
1440N PHE* 4.1 22.7 - - + -
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Residues in contact with LEU1098 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1094N LEU* 2.9 37.0 + - + +
1095N THR* 3.2 11.2 + - - +
1097N LYS* 1.3 77.4 - - - +
1099N VAL* 1.3 60.7 + - - +
1101N VAL* 3.2 7.6 + - - +
1102N THR* 2.8 30.6 + - - +
1226N ALA* 3.7 19.1 - - + +
1229N ILE* 3.8 38.4 - - + -
1230N GLY* 4.6 2.5 - - - +
1263N PHE* 3.9 30.5 - - + -
1371N VAL* 4.1 10.5 - - + -
1424N VAL* 4.0 15.0 - - + -
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Residues in contact with VAL1099 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1038M TRP* 3.4 56.1 - - + +
1095N THR* 2.9 24.3 + - + +
1096N ARG 3.8 4.0 - - - +
1098N LEU* 1.3 74.8 - - - +
1100N ASP* 1.3 64.8 + - - +
1102N THR* 3.7 1.8 - - - -
1103N HIS* 3.0 27.0 + - + +
1223N ILE* 3.9 23.1 - - + +
1226N ALA* 3.6 21.5 - - + -
1227N GLN* 5.1 2.7 - - + +
1463N LYS* 5.8 4.7 - - + -
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Residues in contact with ASP1100 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1096N ARG* 3.0 21.3 + - + +
1097N LYS 3.1 5.1 + - - +
1099N VAL* 1.3 78.8 - - - +
1101N VAL* 1.3 57.8 + - - +
1103N HIS* 3.2 24.2 - - - -
1428N ALA* 3.5 20.9 - - + +
1436N SER* 4.1 8.0 + - - +
1440N PHE* 3.4 40.6 - - + +
1463N LYS* 2.5 38.0 + - - +
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Residues in contact with VAL1101 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1097N LYS 2.9 12.0 + - - +
1098N LEU* 3.2 13.2 + - - +
1100N ASP* 1.3 77.0 - - - +
1102N THR* 1.3 72.1 + - + +
1103N HIS* 3.6 0.6 + - - -
1104N GLU* 5.3 0.9 + - - +
1371N VAL* 4.2 6.1 - - + -
1374N GLN* 3.0 40.2 + - + +
1424N VAL* 3.7 37.2 - - + +
1427N SER* 3.3 33.4 - - - +
1428N ALA* 3.9 9.1 - - - +
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Residues in contact with THR1102 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1098N LEU 2.8 25.0 + - - +
1099N VAL* 3.7 3.5 + - - -
1101N VAL* 1.3 85.8 - - + +
1103N HIS* 1.3 65.6 + - - +
1104N GLU 3.3 2.2 - - - -
1105N ILE* 3.0 22.6 + - - +
1222N GLY* 3.2 32.7 + - - +
1223N ILE 4.2 0.2 + - - -
1225N ALA* 5.1 0.4 - - + -
1226N ALA* 3.7 4.6 - - + +
1370N ILE* 4.3 10.1 - - + -
1371N VAL* 3.5 38.1 - - + -
1374N GLN* 4.4 7.0 - - + -
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Residues in contact with HIS1103 (chain N).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1099N VAL* 3.0 17.2 + - + +
1100N ASP 3.2 24.0 - - - -
1101N VAL 3.6 2.0 - - - -
1102N THR* 1.3 77.4 - - - +
1104N GLU* 1.3 70.8 + - + +
1105N ILE 3.3 4.9 + - - +
1106N VAL* 4.6 0.2 - - - +
1223N ILE* 3.9 24.3 + - + +
1431N THR* 5.9 0.2 + - - -
1436N SER* 2.9 23.5 + - - -
1461N GLY* 4.1 2.9 - - - -
1462N LEU* 3.2 47.2 + - + +
1463N LYS* 3.3 33.1 + - + +
1464N GLU* 3.1 29.8 - - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il