Contacts of the helix formed by residues 1187 - 1213 (chain A) in PDB entry 4IGI
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR1187 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1164A ILE* 3.7 9.0 - - - -
1185A ILE* 3.4 16.0 - - - +
1186A PRO* 1.3 88.3 - - + +
1188A PHE* 1.3 63.4 + - - +
1189A ARG* 3.3 12.7 + - + +
1190A GLU* 2.3 56.8 + - - +
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Residues in contact with PHE1188 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1036A GLY 4.4 9.0 - - - -
1037A VAL* 4.2 23.8 - - + -
1039A SER* 5.5 2.7 - - - -
1040A GLY* 3.7 39.9 - - - -
1043A LEU* 3.8 27.7 - - + +
1044A LEU* 4.6 6.5 - - + -
1138A ALA* 3.8 25.6 - - + -
1164A ILE* 3.7 36.3 - - + -
1187A THR* 1.3 74.2 - - - +
1189A ARG* 1.3 61.2 - - - +
1191A LEU* 3.0 32.1 + - + +
1192A GLY 4.6 0.5 + - - -
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Residues in contact with ARG1189 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1043A LEU* 4.0 14.7 - - + +
1187A THR* 3.0 13.3 + - - +
1188A PHE* 1.3 79.2 - - - +
1190A GLU* 1.3 74.4 + - + +
1191A LEU 3.6 0.2 + - - -
1192A GLY* 4.3 4.7 + - - -
1193A THR* 5.2 2.3 - - - +
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Residues in contact with GLU1190 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1185A ILE* 3.9 17.6 - - + +
1186A PRO* 3.3 22.3 - - + +
1187A THR* 2.3 50.3 + - - +
1188A PHE 3.1 1.2 - - - -
1189A ARG* 1.3 101.7 + - + +
1191A LEU* 1.3 64.2 + - - +
1192A GLY 3.2 3.4 - - - -
1193A THR* 2.7 41.8 + - + +
1194A ILE 4.0 0.9 + - - -
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Residues in contact with LEU1191 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1043A LEU* 4.1 5.6 - - + +
1044A LEU* 3.9 31.6 - - + +
1047A PHE* 3.5 38.0 - - + -
1136A LEU* 3.9 20.4 - - + -
1162A ILE* 4.2 2.0 - - + -
1164A ILE* 4.2 11.7 - - + -
1185A ILE* 3.4 27.3 - - + +
1188A PHE* 3.0 21.4 + - + +
1190A GLU* 1.3 77.9 - - - +
1192A GLY* 1.3 63.3 + - - +
1193A THR 3.1 0.9 + - - -
1194A ILE* 3.1 34.8 + - + +
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Residues in contact with GLY1192 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1047A PHE* 4.7 2.4 - - - +
1050A ARG* 4.5 32.6 + - - -
1188A PHE 4.6 0.4 + - - -
1189A ARG 4.3 5.0 + - - -
1190A GLU 3.2 1.2 - - - -
1191A LEU* 1.3 78.8 - - - +
1193A THR* 1.3 62.3 + - - +
1194A ILE 3.2 1.2 + - - -
1195A GLN* 3.2 16.9 + - - +
1196A GLN 4.9 0.3 + - - -
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Residues in contact with THR1193 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1185A ILE* 5.0 1.4 - - - +
1189A ARG 5.2 1.3 - - - +
1190A GLU* 2.7 38.4 + - + +
1192A GLY* 1.3 75.7 - - - +
1194A ILE* 1.3 67.1 + - - +
1195A GLN 3.5 0.4 - - - -
1196A GLN* 5.0 3.4 + - - +
1197A VAL* 5.4 1.7 + - - +
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Residues in contact with ILE1194 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1047A PHE* 3.9 4.3 - - + -
1162A ILE* 3.7 33.9 - - + -
1183A VAL* 3.7 29.8 - - + -
1185A ILE* 3.8 24.0 - - + -
1191A LEU* 3.1 26.2 - - + +
1193A THR* 1.3 84.8 + - - +
1195A GLN* 1.3 68.9 + - - +
1196A GLN 3.3 2.6 + - - -
1197A VAL* 3.4 17.9 - - + +
1198A ILE* 3.1 23.9 + - + +
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Residues in contact with GLN1195 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1047A PHE* 3.7 16.4 - - + -
1050A ARG* 3.4 55.4 + - + +
1051A VAL* 3.9 7.9 - - + +
1054A SER* 4.3 3.6 + - - -
1191A LEU 3.8 1.6 + - - -
1192A GLY 3.2 15.5 + - - +
1193A THR 3.5 0.4 - - - -
1194A ILE* 1.3 79.4 - - - +
1196A GLN* 1.3 84.2 + - - +
1198A ILE* 3.1 4.3 + - - +
1199A SER* 2.5 48.7 + - - -
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Residues in contact with GLN1196 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1054A SER* 5.8 1.0 - - - -
1192A GLY 4.9 0.4 + - - -
1193A THR 5.0 3.0 + - - +
1194A ILE 3.3 0.8 - - - -
1195A GLN* 1.3 100.3 + - - +
1197A VAL* 1.3 58.2 + - + +
1199A SER* 3.2 10.4 + - - -
1200A GLU* 2.8 66.8 + - - +
1203A ILE* 5.6 4.6 - - - +
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Residues in contact with VAL1197 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1183A VAL* 5.4 5.8 - - + -
1193A THR 5.6 1.1 + - - +
1194A ILE* 3.4 30.0 - - + +
1196A GLN* 1.3 78.8 - - + +
1198A ILE* 1.3 67.0 + - + +
1200A GLU* 3.4 20.5 - - - +
1201A ARG* 2.9 29.5 + - - +
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Residues in contact with ILE1198 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1047A PHE* 4.1 11.4 - - + -
1051A VAL* 4.1 17.0 - - + -
1134A ILE* 4.0 28.5 - - + -
1160A ILE* 3.8 24.0 - - + -
1162A ILE* 3.8 26.9 - - + -
1181A PHE 5.2 0.4 - - - +
1183A VAL* 4.1 17.3 - - + -
1194A ILE* 3.1 17.8 + - + +
1195A GLN 3.1 7.7 + - - +
1197A VAL* 1.3 78.1 - - + +
1199A SER* 1.3 64.3 + - - +
1201A ARG* 3.2 5.8 + - + +
1202A VAL* 3.0 23.5 + - + +
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Residues in contact with SER1199 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1051A VAL* 4.0 11.4 - - - -
1054A SER* 2.9 29.0 + - - -
1055A LEU* 5.5 1.3 - - - +
1195A GLN* 2.5 37.0 + - - -
1196A GLN* 3.5 14.4 - - - -
1198A ILE* 1.3 77.8 - - - +
1200A GLU* 1.3 61.3 + - - +
1202A VAL* 3.2 9.7 + - - +
1203A ILE* 3.1 30.9 + - - +
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Residues in contact with GLU1200 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1196A GLN* 2.8 48.9 + - - +
1197A VAL* 3.4 28.5 - - - +
1199A SER* 1.3 72.5 - - - +
1201A ARG* 1.3 57.2 + - - +
1203A ILE* 3.2 13.8 + - + +
1204A GLN* 2.9 29.0 + - - +
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Residues in contact with ARG1201 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1160A ILE* 3.7 29.2 - - + -
1180A ASP* 3.8 32.7 + - - -
1181A PHE* 3.4 42.8 + - + +
1197A VAL 2.9 17.3 + - - +
1198A ILE* 3.6 9.6 - - + +
1200A GLU* 1.3 75.7 - - - +
1202A VAL* 1.3 64.0 + - - +
1204A GLN* 2.7 39.9 + - - +
1205A LEU* 3.0 37.9 + - + +
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Residues in contact with VAL1202 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1025A LYS* 3.1 41.9 + - + +
1027A VAL* 4.3 10.1 - - + -
1051A VAL* 5.0 5.6 - - + -
1055A LEU* 3.7 27.8 - - + -
1132A LEU* 3.9 19.9 - - + +
1134A ILE* 4.2 24.7 - - + -
1160A ILE* 4.8 7.0 - - + -
1198A ILE* 3.0 17.4 + - + +
1199A SER* 3.2 9.4 + - - +
1201A ARG* 1.3 76.6 - - - +
1203A ILE* 1.3 58.9 + - + +
1205A LEU* 3.4 7.5 + - - +
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Residues in contact with ILE1203 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1025A LYS* 3.7 16.4 + - - +
1054A SER* 5.8 5.6 - - - +
1055A LEU* 6.0 3.4 - - + -
1196A GLN* 5.6 3.6 - - - +
1199A SER* 3.1 20.0 + - - +
1200A GLU* 3.5 16.8 - - + +
1201A ARG 3.2 0.2 - - - -
1202A VAL* 1.3 76.2 - - + +
1204A GLN* 1.3 66.0 + - - +
1205A LEU 3.2 0.9 + - - -
1206A ASN* 3.9 10.2 + - - +
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Residues in contact with GLN1204 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1181A PHE* 4.8 4.2 - - - -
1200A GLU 2.9 13.8 + - - +
1201A ARG* 2.7 47.1 + - - +
1203A ILE* 1.3 78.5 - - - +
1205A LEU* 1.3 69.2 - - + +
1206A ASN* 2.9 11.5 + - - +
1209A GLU* 3.0 52.0 + - + +
1213A LEU* 5.5 4.4 - - - +
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Residues in contact with LEU1205 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1025A LYS* 3.4 13.7 + - - -
1130A PRO* 3.7 16.3 - - - +
1132A LEU* 4.0 20.4 - - + +
1158A VAL* 4.0 14.1 - - + -
1160A ILE* 4.4 8.3 - - + -
1181A PHE* 3.8 33.2 - - + -
1201A ARG* 3.0 36.6 + - + +
1202A VAL 3.4 3.7 + - - +
1203A ILE 3.1 1.6 - - - -
1204A GLN* 1.3 89.4 - - + +
1206A ASN* 1.3 62.9 + - - +
1209A GLU* 4.4 4.0 - - + -
1210A LEU* 4.1 12.1 - - + -
1213A LEU* 3.9 16.2 - - + -
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Residues in contact with ASN1206 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1024A GLU 5.9 0.4 - - - -
1025A LYS* 3.8 15.7 - - - +
1130A PRO* 3.9 6.5 - - - -
1203A ILE 4.2 7.2 + - - +
1204A GLN 2.9 15.1 + - - -
1205A LEU* 1.3 75.3 - - - +
1207A ARG* 1.3 65.6 + - - +
1208A GLU* 3.1 16.4 + - - +
1209A GLU* 2.8 34.4 + - - +
1210A LEU* 3.0 22.0 + - - +
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Residues in contact with ARG1207 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1024A GLU* 3.1 21.9 + - - -
1127A GLU* 3.2 23.8 + - - +
1128A GLY* 3.1 24.8 - - - +
1129A VAL* 3.7 22.4 - - - +
1130A PRO* 3.8 17.0 - - + +
1206A ASN* 1.3 74.4 - - - +
1208A GLU* 1.3 75.7 + - - +
1210A LEU* 3.5 4.6 + - - +
1211A SER* 3.1 24.5 + - - -
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Residues in contact with GLU1208 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1206A ASN* 3.1 17.4 + - - +
1207A ARG* 1.3 84.3 + - - +
1209A GLU* 1.3 63.9 + - - +
1211A SER* 3.0 22.9 - - - -
1212A SER* 3.6 7.4 + - - -
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Residues in contact with GLU1209 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1204A GLN* 3.0 60.7 + - + +
1205A LEU* 4.4 7.4 - - + -
1206A ASN* 2.8 15.5 + - - +
1208A GLU* 1.3 73.9 - - - +
1210A LEU* 1.3 64.3 + - - +
1212A SER* 2.9 22.2 + - - -
1213A LEU* 3.4 16.3 + - + +
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Residues in contact with LEU1210 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1130A PRO* 3.6 34.5 - - + -
1132A LEU* 4.3 0.9 - - + -
1158A VAL* 3.8 35.2 - - + -
1177A PHE* 4.4 7.9 - - + -
1205A LEU* 3.9 20.6 - - + +
1206A ASN 3.0 18.3 + - - +
1207A ARG* 3.9 5.2 - - - +
1209A GLU* 1.3 76.6 - - - +
1211A SER* 1.3 61.9 + - - +
1213A LEU* 3.0 47.4 + - + +
1214A LYS* 5.0 0.2 + - - -
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Residues in contact with SER1211 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1207A ARG 3.1 15.7 + - - -
1208A GLU* 3.0 17.9 - - - -
1210A LEU* 1.3 77.2 - - - +
1212A SER* 1.3 56.1 + - - +
1214A LYS* 3.2 18.9 + - - -
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Residues in contact with SER1212 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1208A GLU 4.0 6.1 + - - -
1209A GLU* 2.9 20.1 + - - -
1211A SER* 1.3 78.4 - - - +
1213A LEU* 1.3 59.7 + - - +
1214A LYS* 4.1 8.4 + - - +
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Residues in contact with LEU1213 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1177A PHE* 3.4 32.3 - - + -
1178A ILE* 3.8 30.5 - - + -
1181A PHE* 3.5 25.6 - - + -
1204A GLN* 5.5 3.4 - - - +
1205A LEU* 3.9 7.4 - - + -
1209A GLU* 3.4 18.1 + - + +
1210A LEU* 3.0 32.8 + - + +
1212A SER* 1.3 80.1 - - - +
1214A LYS* 1.3 71.7 + - - +
1215A PRO* 4.6 0.7 - - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il