Contacts of the helix formed by residues 160 - 220 (chain F) in PDB entry 4LHZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ARG 160 (chain F).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157F GLY* 3.3 21.1 + - - +
159F GLU* 1.3 78.5 - - - +
161F LEU* 1.3 55.6 + - - +
162F LYS 3.1 5.2 + - - -
163F GLU* 3.2 22.3 + - - +
164F GLU* 4.2 3.3 + - - +
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Residues in contact with LEU 161 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157E GLY 4.9 1.3 - - - +
161E LEU* 3.0 37.6 - - + +
157F GLY 3.5 11.5 + - - +
158F TYR* 4.6 8.5 - - - +
159F GLU 3.1 1.4 + - - -
160F ARG* 1.3 76.7 - - - +
162F LYS* 1.3 54.5 + - - +
163F GLU 3.2 4.5 + - - -
164F GLU* 4.4 9.0 + - - +
165F LEU* 4.4 14.0 + - - +
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Residues in contact with LYS 162 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
158F TYR 5.0 2.6 + - - +
159F GLU* 3.1 15.8 + - - +
161F LEU* 1.3 77.2 - - - +
163F GLU* 1.3 58.0 + - - +
165F LEU* 5.0 2.9 - - - -
166F ALA* 4.9 9.8 - - - +
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Residues in contact with GLU 163 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
159F GLU 5.7 0.2 - - - +
160F ARG* 3.2 14.0 + - - +
161F LEU 3.2 0.4 - - - -
162F LYS* 1.3 79.3 - - - +
164F GLU* 1.3 68.0 + - - +
165F LEU 3.3 2.3 + - - -
166F ALA* 3.6 9.4 + - - +
167F LYS* 3.7 15.9 + - - +
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Residues in contact with GLU 164 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
165E LEU* 4.8 20.2 - - + -
168E ALA* 5.8 2.9 - - + +
160F ARG 4.2 5.5 + - - +
161F LEU* 4.4 6.0 + - - +
163F GLU* 1.3 78.6 - - - +
165F LEU* 1.3 57.2 + - + +
167F LYS* 5.5 0.9 - - - -
168F ALA* 3.1 39.3 + - + +
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Residues in contact with LEU 165 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
161F LEU 4.4 13.4 + - - +
162F LYS* 5.0 2.2 - - - -
163F GLU 3.3 1.0 - - - +
164F GLU* 1.3 78.6 - - - +
166F ALA* 1.3 57.6 + - - +
167F LYS 3.6 0.2 - - - -
168F ALA* 5.2 0.9 - - - -
169F GLN* 3.4 20.3 - - - +
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Residues in contact with ALA 166 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
162F LYS 4.9 9.8 + - - +
163F GLU 3.6 7.0 + - - +
164F GLU 3.4 0.4 - - - -
165F LEU* 1.3 76.8 - - + +
167F LYS* 1.3 59.3 + - - +
169F GLN* 4.4 7.5 - - - +
170F ARG* 4.5 7.8 + - - +
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Residues in contact with LYS 167 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163F GLU 3.7 13.0 + - - +
164F GLU* 5.5 0.7 - - - -
166F ALA* 1.3 78.7 - - - +
168F ALA* 1.3 57.3 + - - +
169F GLN 3.0 4.3 - - - -
170F ARG* 2.8 26.5 + - + +
171F GLU* 2.9 12.2 + - + +
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Residues in contact with ALA 168 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
168E ALA* 5.0 20.6 - - + +
172E LEU* 5.2 6.8 - - + +
164F GLU* 3.1 23.1 + - + +
165F LEU* 5.2 0.4 - - - -
167F LYS* 1.3 77.5 - - - +
169F GLN* 1.3 50.6 + - - +
171F GLU* 3.1 11.7 - - + +
172F LEU* 2.8 35.5 + - - +
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Residues in contact with GLN 169 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
165F LEU 3.4 23.5 + - - +
166F ALA* 4.4 6.7 - - - +
167F LYS 3.0 1.0 - - - +
168F ALA* 1.3 75.6 - - - +
170F ARG* 1.3 63.5 + - - +
171F GLU 3.1 1.1 - - - -
172F LEU* 4.5 4.0 - - - +
173F LYS* 3.1 27.4 + - - +
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Residues in contact with ARG 170 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
166F ALA 4.5 4.8 + - - +
167F LYS* 2.8 21.6 + - + +
169F GLN* 1.3 75.2 - - - +
171F GLU* 1.3 60.9 + - - +
173F LYS* 4.3 3.7 - - - +
174F LEU* 3.2 24.1 + - - +
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Residues in contact with GLU 171 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
172E LEU* 5.2 9.2 - - + -
167F LYS* 2.9 6.8 + - + +
168F ALA* 3.1 21.1 - - + +
169F GLN 3.1 0.2 - - - -
170F ARG* 1.3 73.6 - - - +
172F LEU* 1.3 66.3 + - - +
174F LEU* 3.0 17.8 + - - +
175F LYS* 3.0 14.1 + - - +
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Residues in contact with LEU 172 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
171E GLU* 5.5 6.3 - - + -
172E LEU* 5.1 18.7 - - + +
175E LYS* 4.1 9.9 + - + +
168F ALA 2.8 19.1 + - - +
169F GLN* 4.5 4.3 - - - +
171F GLU* 1.3 72.6 - - - +
173F LYS* 1.3 56.0 + - - +
175F LYS* 4.0 5.5 - - - +
176F ASP* 2.8 33.8 + - - +
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Residues in contact with LYS 173 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
169F GLN 3.1 19.8 + - - +
170F ARG* 4.3 4.3 - - - +
172F LEU* 1.3 76.4 - - - +
174F LEU* 1.3 62.0 + - - +
176F ASP* 3.8 5.5 + - - +
177F GLU* 3.0 39.9 + - - +
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Residues in contact with LEU 174 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
170F ARG 3.2 14.7 + - - +
171F GLU* 3.0 12.4 + - - +
173F LYS* 1.3 80.2 - - - +
175F LYS* 1.3 61.4 + - - +
177F GLU* 3.5 11.8 + - - +
178F GLU* 3.4 16.1 + - - +
181F ARG* 4.3 4.0 + - - -
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Residues in contact with LYS 175 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
172E LEU* 5.9 1.3 - - - +
175E LYS* 4.3 21.5 - - + -
176E ASP* 5.6 0.9 - - - +
179E CYS* 4.7 11.4 - - - -
171F GLU 3.0 12.0 + - - +
172F LEU* 4.0 7.2 - - - +
174F LEU* 1.3 71.8 - - - +
176F ASP* 1.3 59.2 + - - +
177F GLU 3.1 1.6 - - - -
178F GLU* 2.7 35.0 + - - +
179F CYS* 3.2 11.9 - - - -
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Residues in contact with ASP 176 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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175E LYS* 2.7 36.2 - - - +
172F LEU 2.8 20.0 + - - +
173F LYS* 3.9 7.4 - - - +
175F LYS* 1.3 72.5 - - - +
177F GLU* 1.3 62.6 + - + +
179F CYS* 3.6 4.5 + - - +
180F GLU* 3.3 29.5 + - - +
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Residues in contact with GLU 177 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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173F LYS* 3.0 28.4 + - - +
174F LEU* 3.6 9.4 - - - +
175F LYS 3.1 0.6 - - - -
176F ASP* 1.3 76.0 - - + +
178F GLU* 1.3 65.9 + - - +
180F GLU* 3.4 26.0 - - - +
181F ARG* 3.1 40.2 + - - +
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Residues in contact with GLU 178 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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179E CYS* 4.2 17.0 - - - -
174F LEU 3.4 7.5 + - - +
175F LYS* 2.7 21.6 + - - +
177F GLU* 1.3 69.6 - - - +
179F CYS* 1.3 56.1 + - - +
181F ARG* 2.7 40.8 + - - +
182F LEU* 2.9 19.8 + - + +
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Residues in contact with CYS 179 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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175E LYS* 4.5 15.0 - - - -
178E GLU* 4.6 17.0 - - - +
179E CYS* 4.5 16.2 - - - -
182E LEU* 4.4 16.3 - - + +
175F LYS 3.2 20.2 - - - -
176F ASP* 3.9 9.4 - - - +
178F GLU* 1.3 69.6 - - - +
180F GLU* 1.3 59.8 - - - +
182F LEU* 4.1 11.7 - - - +
183F SER* 2.7 37.4 + - - -
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Residues in contact with GLU 180 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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176F ASP* 3.3 18.0 + - - +
177F GLU* 3.4 24.3 - - - +
178F GLU 3.2 0.2 - - - -
179F CYS* 1.3 78.0 - - - +
181F ARG* 1.3 58.6 + - + +
183F SER* 2.5 22.5 + - - -
184F LYS* 3.6 25.7 + - - +
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Residues in contact with ARG 181 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174F LEU 4.3 4.8 + - - -
177F GLU* 3.1 50.4 + - - +
178F GLU* 2.7 22.6 + - - +
180F GLU* 1.3 69.3 - - + +
182F LEU* 1.3 58.7 + - + +
183F SER 2.8 5.1 + - - -
184F LYS* 2.8 31.4 + - - +
185F VAL* 3.4 10.9 + - - +
188F GLN* 5.2 0.2 + - - -
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Residues in contact with LEU 182 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A ARG* 4.2 24.9 - - - +
179E CYS* 4.0 14.6 - - - +
182E LEU* 3.6 31.6 - - + +
183E SER* 3.3 39.3 - - - +
185E VAL* 5.3 3.5 - - - +
186E ARG* 4.9 1.4 - - + +
178F GLU* 2.9 24.7 + - + +
179F CYS* 4.0 4.0 - - - +
181F ARG* 1.3 76.9 - - + +
183F SER* 1.3 60.9 + - - +
185F VAL* 3.6 24.0 - - + +
186F ARG* 4.9 1.9 + - - +
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Residues in contact with SER 183 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182E LEU* 3.8 13.0 - - - +
179F CYS* 2.7 17.8 + - - -
180F GLU* 2.5 29.2 + - - -
182F LEU* 1.3 75.5 - - - +
184F LYS* 1.3 71.5 + - - +
185F VAL 3.1 2.1 + - - -
186F ARG* 4.1 12.3 + - - +
187F ASP* 5.1 4.3 + - - +
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Residues in contact with LYS 184 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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180F GLU* 3.6 25.4 + - - +
181F ARG* 2.8 11.8 + - - +
183F SER* 1.3 80.4 + - - +
185F VAL* 1.3 66.2 + - - +
187F ASP* 3.7 11.7 + - - +
188F GLN* 3.2 40.7 + - - +
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Residues in contact with VAL 185 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72A THR* 5.1 3.8 - - + +
79A ARG* 5.2 2.5 - - - +
185E VAL* 6.5 0.2 - - + -
186E ARG* 4.2 26.2 - - + +
189E LEU* 5.0 2.0 - - + -
181F ARG 3.4 4.4 + - - +
182F LEU* 3.6 33.0 - - + +
183F SER 3.1 2.6 - - - -
184F LYS* 1.3 73.3 - - - +
186F ARG* 1.3 70.2 + - - +
187F ASP 2.8 1.6 + - - -
188F GLN* 2.9 19.0 + - - +
189F LEU* 3.0 41.7 + - + -
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Residues in contact with ARG 186 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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185E VAL* 5.2 10.3 - - + -
189E LEU* 3.6 45.1 - - + +
182F LEU 5.6 2.0 - - - +
183F SER 4.1 8.4 + - - +
184F LYS 3.7 0.6 - - - -
185F VAL* 1.3 79.0 - - + +
187F ASP* 1.3 75.0 + - - +
189F LEU* 3.4 4.0 + - - +
190F GLY* 3.1 16.1 + - - -
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Residues in contact with ASP 187 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
183F SER 5.1 4.5 + - - +
184F LYS* 3.7 10.3 + - - +
185F VAL 2.8 3.8 + - - -
186F ARG* 1.3 85.2 + - - +
188F GLN* 1.3 53.4 + - + +
190F GLY* 2.9 5.9 + - - -
191F GLN* 2.6 35.9 + - + +
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Residues in contact with GLN 188 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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72A THR* 2.7 34.6 + - + +
181F ARG 5.2 0.4 + - - -
184F LYS* 3.2 42.0 + - - +
185F VAL* 2.9 13.7 + - - +
187F ASP* 1.3 71.9 - - + +
189F LEU* 1.3 67.9 + - - +
191F GLN* 2.9 10.4 + - + -
192F GLU* 2.6 33.7 + - - +
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Residues in contact with LEU 189 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72A THR* 2.4 55.4 - - + +
73A ILE* 4.1 5.2 - - - +
76A ALA* 4.8 4.9 - - + -
186E ARG 5.0 3.1 - - - +
189E LEU* 3.8 32.8 - - + +
190E GLY* 4.0 15.3 - - - +
193E LEU* 3.6 26.1 - - + +
185F VAL* 3.0 31.5 + - + +
186F ARG* 3.8 8.1 - - - +
188F GLN* 1.3 71.3 - - - +
190F GLY* 1.3 57.4 + - - +
192F GLU* 3.8 2.7 - - - +
193F LEU* 2.8 30.1 + - - +
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Residues in contact with GLY 190 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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193E LEU* 5.4 0.2 - - - -
186F ARG 3.1 9.4 + - - -
187F ASP 2.9 8.0 + - - -
189F LEU* 1.3 74.6 - - - +
191F GLN* 1.3 65.9 + - - +
193F LEU* 2.9 21.4 + - - +
194F GLU* 2.9 23.2 + - - +
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Residues in contact with GLN 191 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
187F ASP* 2.6 17.9 + - + +
188F GLN* 2.9 15.0 + - + +
190F GLY* 1.3 72.0 - - - +
192F GLU* 1.3 61.9 + - + +
194F GLU* 3.2 35.3 + - - +
195F GLU* 3.4 11.5 + - - +
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Residues in contact with GLU 192 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69A ARG 3.9 8.8 - - - +
70A PHE* 2.9 28.9 - - + +
71A ARG* 3.9 2.5 + - - +
72A THR* 2.8 33.4 + - - -
73A ILE* 2.6 49.7 + - + +
188F GLN* 2.6 23.9 + - - +
191F GLN* 1.3 70.7 - - + +
193F LEU* 1.3 66.4 + - - +
195F GLU* 2.9 10.6 + - - +
196F LEU* 2.7 24.6 + - - +
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Residues in contact with LEU 193 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73A ILE* 4.0 6.9 - - - +
193E LEU* 4.1 17.7 - - + -
196E LEU* 4.7 22.0 - - + -
197E THR* 4.3 22.0 - - + -
200E LEU* 4.6 6.3 - - + -
189F LEU 2.8 22.9 + - - +
190F GLY* 2.9 9.6 + - - +
192F GLU* 1.3 72.6 - - - +
194F GLU* 1.3 65.2 + - + +
196F LEU* 3.3 3.1 + - + -
197F THR* 2.9 44.0 + - - +
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Residues in contact with GLU 194 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
190F GLY* 2.9 22.2 + - - +
191F GLN* 3.2 32.2 + - - +
193F LEU* 1.3 75.6 - - + +
195F GLU* 1.3 63.7 + - - +
197F THR* 2.9 17.1 + - - -
198F ALA* 3.0 16.1 + - - +
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Residues in contact with GLU 195 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69A ARG* 3.1 36.1 + - - +
70A PHE* 3.6 22.0 - - + -
191F GLN* 3.4 8.2 + - - +
192F GLU* 2.9 10.3 + - - +
194F GLU* 1.3 78.1 - - - +
196F LEU* 1.3 61.9 + - - +
198F ALA* 3.9 6.3 - - + +
199F SER* 2.7 36.4 + - - +
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Residues in contact with LEU 196 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41A ILE* 4.3 22.9 - - + -
43A ILE* 4.7 8.3 - - + -
70A PHE* 4.3 10.9 - - + -
73A ILE* 3.9 21.5 - - + -
77A TYR* 4.7 4.7 - - - +
197E THR* 3.5 33.2 - - + -
200E LEU* 5.6 1.3 - - + -
201E PHE* 4.5 11.9 - - + -
192F GLU 2.7 19.0 + - - +
193F LEU* 3.7 5.4 - - + +
195F GLU* 1.3 73.5 - - - +
197F THR* 1.3 53.7 + - - +
199F SER* 3.0 6.1 + - - -
200F LEU* 2.6 66.2 + - + +
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Residues in contact with THR 197 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
200E LEU* 3.5 31.1 - - + +
193F LEU* 2.9 33.3 + - - +
194F GLU* 2.9 6.9 + - - -
196F LEU* 1.3 75.2 - - - +
198F ALA* 1.3 52.3 + - - +
200F LEU* 3.0 9.4 + - + +
201F PHE* 2.7 35.7 + - + +
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Residues in contact with ALA 198 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
194F GLU 3.0 15.0 + - - +
195F GLU* 3.9 7.9 - - + +
197F THR* 1.3 74.7 - - - +
199F SER* 1.3 51.7 + - - +
201F PHE* 2.7 14.9 + - - +
202F GLU* 2.7 36.6 + - - +
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Residues in contact with SER 199 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41A ILE* 3.9 21.1 - - - +
69A ARG* 3.6 22.9 + - - -
70A PHE* 4.7 2.6 - - - -
195F GLU* 2.7 25.8 + - - +
196F LEU* 3.0 6.5 + - - -
198F ALA* 1.3 77.8 - - - +
200F LEU* 1.3 63.1 - - - +
202F GLU* 4.4 7.0 - - - +
203F GLU* 3.2 28.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 200 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37A PHE* 4.5 16.4 - - + -
41A ILE* 4.3 12.6 - - + -
197E THR* 6.3 0.2 - - + -
200E LEU* 4.7 20.0 - - + -
201E PHE* 4.4 22.4 - - + -
204E ALA* 3.6 31.4 - - + -
196F LEU* 2.6 50.0 + - + +
197F THR* 3.2 14.6 - - + +
199F SER* 1.3 72.9 - - - +
201F PHE* 1.3 64.9 + - - +
203F GLU* 3.9 0.7 - - - +
204F ALA* 2.9 26.5 + - - +
----------------------------------------------------------
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Residues in contact with PHE 201 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
207E MET* 6.4 1.6 - - + -
197F THR* 2.7 13.5 + - + +
198F ALA* 2.7 18.0 + - - +
200F LEU* 1.3 72.8 - - - +
202F GLU* 1.3 69.4 + - + +
204F ALA* 3.1 7.0 + - + +
205F HIS* 3.1 29.5 + + + +
----------------------------------------------------------
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Residues in contact with GLU 202 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
198F ALA* 2.7 18.4 + - - +
199F SER* 4.3 5.9 - - - +
201F PHE* 1.3 82.9 - - + +
203F GLU* 1.3 67.4 + - - +
205F HIS* 3.3 8.0 + - + +
206F LYS* 3.0 30.9 + - + +
----------------------------------------------------------
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Residues in contact with GLU 203 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37A PHE* 4.4 12.6 - - + -
40A THR* 3.9 35.4 + - + +
41A ILE* 4.9 6.5 - - + +
199F SER* 3.2 19.1 + - - +
200F LEU 4.0 1.8 - - - +
202F GLU* 1.3 79.8 - - - +
204F ALA* 1.3 61.1 + - - +
206F LYS* 3.1 25.2 + - + +
207F MET* 2.8 51.9 + - + +
----------------------------------------------------------
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Residues in contact with ALA 204 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37A PHE* 4.8 5.5 - - - -
204E ALA* 4.4 15.7 - - + +
207E MET* 3.7 26.2 - - + -
208E VAL* 4.5 4.5 - - - -
200F LEU 2.9 19.6 + - - +
201F PHE* 3.4 8.7 - - + +
203F GLU* 1.3 76.2 - - - +
205F HIS* 1.3 57.6 + - - +
207F MET* 3.2 7.4 + - - +
208F VAL* 2.9 34.8 + - - +
----------------------------------------------------------
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Residues in contact with HIS 205 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
207E MET* 5.2 0.9 - - - +
201F PHE* 3.1 21.7 + + + +
202F GLU* 3.6 11.1 + - - +
204F ALA* 1.3 70.9 - - - +
206F LYS* 1.3 60.4 + - - +
207F MET 3.0 2.0 - - - -
208F VAL* 4.7 6.1 - - + -
209F ARG* 2.6 69.3 + - + +
----------------------------------------------------------
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Residues in contact with LYS 206 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
202F GLU* 3.0 22.1 + - + +
203F GLU* 3.6 27.4 - - - +
205F HIS* 1.3 78.8 + - - +
207F MET* 1.3 57.5 + - + +
209F ARG* 3.8 37.9 - - - +
210F GLU* 2.9 45.3 + - + +
----------------------------------------------------------
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Residues in contact with MET 207 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35A SER* 4.7 11.9 - - - -
36A THR 3.6 18.2 - - - +
37A PHE* 3.3 45.8 - - + -
40A THR* 5.4 2.7 - - + +
208E VAL* 3.4 33.4 - - + +
211E ALA* 5.0 0.4 - - - +
212E ASN* 5.2 0.9 - - - +
203F GLU* 2.8 29.5 + - + +
204F ALA 3.5 0.4 - - - +
205F HIS 3.0 0.2 - - - -
206F LYS* 1.3 76.2 - - + +
208F VAL* 1.3 64.6 + - - +
209F ARG 3.2 1.6 - - - -
210F GLU* 3.5 13.2 + - - +
211F ALA* 3.3 23.2 + - - +
----------------------------------------------------------
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Residues in contact with VAL 208 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
207E MET* 4.1 18.8 - - + +
208E VAL* 3.9 28.5 - - + +
211E ALA* 3.6 21.0 - - + +
204F ALA 2.9 22.7 + - - +
205F HIS* 4.0 7.2 - - + +
207F MET* 1.3 72.3 - - - +
209F ARG* 1.3 64.5 + - - +
211F ALA 3.7 1.2 + - - -
212F ASN* 2.9 43.6 + - - +
----------------------------------------------------------
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Residues in contact with ARG 209 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
205F HIS* 2.6 47.7 + - - +
206F LYS* 3.8 43.2 + - - +
208F VAL* 1.3 69.9 - - - +
210F GLU* 1.3 62.1 + - + +
212F ASN* 2.6 32.4 + - - +
213F ILE* 3.0 27.0 + - + +
----------------------------------------------------------
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Residues in contact with GLU 210 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
206F LYS* 2.9 33.9 + - + +
207F MET* 3.5 14.9 + - - +
209F ARG* 1.3 83.4 - - + +
211F ALA* 1.3 57.2 + - - +
212F ASN 3.3 2.9 + - - -
213F ILE* 3.8 12.1 + - + +
214F LYS* 3.4 35.2 + - - +
----------------------------------------------------------
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Residues in contact with ALA 211 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
211E ALA* 3.8 22.2 - - + +
212E ASN* 3.3 25.6 - - - +
215E GLN* 3.6 35.4 - - - +
207F MET 3.3 13.1 + - - +
208F VAL 3.8 0.2 - - - -
209F ARG 3.0 1.2 + - - -
210F GLU* 1.3 76.9 - - - +
212F ASN* 1.3 63.2 + - - +
214F LYS 4.2 2.5 - - - -
215F GLN* 3.9 7.8 + - - +
----------------------------------------------------------
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Residues in contact with ASN 212 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
211E ALA* 4.3 7.8 - - - +
214E LYS* 6.0 1.2 - - - -
208F VAL* 2.9 33.0 + - - +
209F ARG* 2.6 19.7 + - - +
211F ALA* 1.3 76.2 - - - +
213F ILE* 1.3 67.8 + - - +
214F LYS 3.0 1.3 - - - -
215F GLN* 2.8 29.1 + - - +
216F ALA* 3.1 12.9 + - - +
----------------------------------------------------------
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Residues in contact with ILE 213 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
209F ARG* 3.0 30.5 + - + +
210F GLU* 3.8 16.2 - - + +
212F ASN* 1.3 75.7 - - - +
214F LYS* 1.3 66.7 + - + +
216F ALA* 3.2 5.0 + - - +
217F THR* 3.0 42.3 + - + +
----------------------------------------------------------
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Residues in contact with LYS 214 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
215E GLN* 3.1 39.1 - - - +
219E GLU* 5.9 0.3 - - - +
210F GLU* 3.4 20.9 + - - +
211F ALA* 4.8 0.2 - - - -
212F ASN 3.0 1.4 - - - +
213F ILE* 1.3 83.8 - - + +
215F GLN* 1.3 56.6 + - - +
217F THR* 3.7 11.4 - - - +
218F ALA* 3.3 22.3 - - - +
----------------------------------------------------------
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Residues in contact with GLN 215 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
211E ALA 5.3 0.6 + - - -
214E LYS* 3.8 35.3 - - - +
215E GLN* 4.3 10.5 - - - +
218E ALA* 4.1 23.5 - - + +
211F ALA 3.9 11.4 + - - +
212F ASN* 2.8 26.5 + - - +
214F LYS* 1.3 79.7 - - - +
216F ALA* 1.3 59.6 + - - +
218F ALA 4.2 0.5 - - - -
219F GLU* 3.2 24.7 + - - +
----------------------------------------------------------
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Residues in contact with ALA 216 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
212F ASN 3.1 10.1 + - - +
213F ILE* 3.8 7.9 - - - +
215F GLN* 1.3 75.4 - - - +
217F THR* 1.3 56.3 + - + +
219F GLU* 3.0 7.3 + - - +
220F LYS* 2.7 36.2 + - - +
----------------------------------------------------------
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Residues in contact with THR 217 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
213F ILE* 3.0 32.3 + - + +
214F LYS* 3.7 11.8 - - - +
216F ALA* 1.3 76.3 - - + +
218F ALA* 1.3 63.3 + - - +
220F LYS* 3.4 15.7 + - - +
221F GLN* 3.4 22.3 + - - +
----------------------------------------------------------
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Residues in contact with ALA 218 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
218E ALA* 4.3 25.8 - - + +
219E GLU* 4.4 10.3 - - + +
222E LEU* 4.2 12.8 - - + +
214F LYS 3.3 20.5 + - - +
215F GLN 4.4 2.5 - - - +
216F ALA 3.2 0.4 - - - -
217F THR* 1.3 80.7 + - - +
219F GLU* 1.3 60.4 + - - +
221F GLN* 3.6 21.1 - - - +
222F LEU* 3.9 4.3 + - - +
----------------------------------------------------------
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Residues in contact with GLU 219 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
218E ALA* 5.5 4.9 - - + -
215F GLN 3.2 21.0 + - - +
216F ALA* 3.0 8.4 + - - +
218F ALA* 1.3 74.9 - - - +
220F LYS* 1.3 55.4 + - - +
221F GLN 3.1 4.9 - - - -
222F LEU* 2.9 25.7 + - + +
223F LYS* 3.2 10.9 + - - +
----------------------------------------------------------
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Residues in contact with LYS 220 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
216F ALA 2.7 18.6 + - - +
217F THR* 3.4 11.4 + - - +
219F GLU* 1.3 71.0 - - - +
221F GLN* 1.3 61.8 + - - +
222F LEU 3.4 0.2 - - - -
223F LYS* 3.7 10.5 - - + -
224F GLU* 2.8 36.8 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il