Contacts of the helix formed by residues 150 - 213 (chain B) in PDB entry 4NSW
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLN 150 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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149B ALA* 1.3 73.2 - - - +
151B GLU* 1.3 59.5 + - - +
152B ALA 2.9 5.6 - - - +
153B GLU* 2.9 46.3 + - + +
154B GLU* 3.0 30.1 + - + +
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Residues in contact with GLU 151 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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140B HIS* 4.2 23.1 + - - +
144B VAL* 4.3 16.0 - - + +
145B PRO* 5.9 3.9 - - - +
148B ARG 5.2 4.8 - - - +
149B ALA* 5.0 4.3 - - - -
150B GLN* 1.3 80.8 - - - +
152B ALA* 1.3 52.5 + - - +
154B GLU* 3.6 14.2 + - - +
155B ALA* 2.8 32.4 + - - +
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Residues in contact with ALA 152 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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326A ARG* 3.8 30.2 + - - +
144B VAL* 3.5 25.4 - - + -
146B ARG* 5.5 2.9 - - - +
149B ALA* 3.6 19.7 - - + +
150B GLN 2.9 1.0 - - - +
151B GLU* 1.3 79.0 - - - +
153B GLU* 1.3 65.9 + - - +
155B ALA* 2.9 13.0 + - - +
156B GLY* 2.9 12.5 + - - -
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Residues in contact with GLU 153 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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150B GLN* 2.9 39.3 + - + +
152B ALA* 1.3 78.4 - - - +
154B GLU* 1.3 60.1 + - + +
156B GLY* 3.4 2.0 + - - -
157B ALA* 3.2 24.6 + - - +
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Residues in contact with GLU 154 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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150B GLN* 3.0 35.9 + - + +
151B GLU* 3.6 10.1 + - - +
153B GLU* 1.3 76.9 - - + +
155B ALA* 1.3 59.3 + - - +
157B ALA* 4.1 7.4 - - - +
158B ALA* 3.2 25.6 + - - +
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Residues in contact with ALA 155 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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326A ARG* 4.2 1.8 - - - +
137B ALA* 5.0 1.4 - - - +
140B HIS* 3.6 30.6 - - + +
141B ASN* 3.7 21.5 + - - +
144B VAL* 4.3 2.7 - - + -
151B GLU 2.8 18.0 + - - +
152B ALA* 2.9 11.4 + - - +
154B GLU* 1.3 77.1 - - - +
156B GLY* 1.3 53.9 + - - +
158B ALA* 3.3 4.1 + - - +
159B LEU* 2.8 35.2 + - - +
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Residues in contact with GLY 156 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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326A ARG* 4.9 2.0 - - - -
141B ASN* 3.5 16.1 - - - +
152B ALA 2.9 11.9 + - - -
153B GLU* 3.8 3.8 - - - -
155B ALA* 1.3 74.7 - - - +
157B ALA* 1.3 59.3 + - - +
159B LEU* 3.3 7.8 + - - +
160B ARG* 2.9 32.3 + - - +
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Residues in contact with ALA 157 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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153B GLU 3.2 17.1 + - - +
154B GLU* 4.3 6.7 - - - +
156B GLY* 1.3 75.3 - - - +
158B ALA* 1.3 61.6 + - - +
160B ARG* 3.2 22.8 + - - +
161B THR* 3.2 28.1 + - + +
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Residues in contact with ALA 158 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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137B ALA* 4.4 5.9 - - + +
140B HIS* 5.6 5.2 - - + -
154B GLU 3.2 22.1 + - - +
155B ALA* 3.5 7.4 - - - +
157B ALA* 1.3 74.4 - - - +
159B LEU* 1.3 64.1 + - - +
161B THR* 3.2 11.1 + - - -
162B ALA* 3.1 22.7 + - - +
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Residues in contact with LEU 159 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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252A GLY 4.8 3.6 - - - +
254A GLU* 3.3 37.9 - - + +
343A ASP* 4.5 8.5 - - + +
134B LEU* 4.6 1.9 - - + +
137B ALA* 3.9 21.7 - - + +
138B LEU* 4.2 19.3 - - + -
141B ASN* 3.5 33.0 - - + +
155B ALA 2.8 20.2 + - - +
156B GLY* 3.5 9.0 - - - +
158B ALA* 1.3 71.4 - - - +
160B ARG* 1.3 66.4 + - + +
162B ALA* 3.3 1.7 + - - +
163B ARG* 2.9 31.7 + - + +
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Residues in contact with ARG 160 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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251A GLY 3.7 12.3 + - - +
252A GLY* 3.6 39.1 - - - +
253A GLU* 4.5 3.8 - - - +
156B GLY 2.9 13.9 + - - +
157B ALA* 3.2 25.3 + - - +
159B LEU* 1.3 81.0 - - - +
161B THR* 1.3 59.9 + - + +
163B ARG* 3.4 1.6 + - - +
164B ALA* 3.0 30.2 + - - +
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Residues in contact with THR 161 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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157B ALA* 3.2 16.7 + - + +
158B ALA* 3.2 11.8 + - - -
160B ARG* 1.3 77.3 - - + +
162B ALA* 1.3 62.9 + - - +
164B ALA* 3.9 5.4 - - - +
165B GLY* 3.0 25.5 + - - -
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Residues in contact with ALA 162 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130B GLY 4.9 1.0 - - - +
133B SER* 4.0 14.3 + - - +
134B LEU* 3.9 19.5 - - + +
137B ALA* 3.7 24.2 - - + -
158B ALA 3.1 16.5 + - - +
159B LEU 3.8 1.3 - - - +
161B THR* 1.3 78.6 + - - +
163B ARG* 1.3 58.0 + - - +
165B GLY* 3.9 0.8 - - - -
166B TYR* 2.9 31.0 + - - +
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Residues in contact with ARG 163 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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252A GLY 3.6 10.3 - - - +
253A GLU 3.6 8.1 - - - +
254A GLU* 3.1 37.3 + - - +
255A PRO* 3.5 18.4 - - - +
285A ARG* 4.0 14.1 - - - +
11B LEU 5.1 2.4 + - - -
13B ASP* 3.6 32.9 + - - +
134B LEU* 3.6 32.8 - - + +
138B LEU* 4.2 2.6 - - - +
159B LEU 2.9 17.6 + - - +
160B ARG 3.8 3.4 - - - +
162B ALA* 1.3 75.4 - - - +
164B ALA* 1.3 60.7 + - - +
166B TYR* 3.4 6.8 + - - -
167B ARG* 2.9 68.6 + - - +
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Residues in contact with ALA 164 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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246A LYS* 6.1 0.5 - - - +
250A LEU* 4.1 23.7 - - + +
251A GLY 5.3 2.0 - - - +
252A GLY* 4.4 5.6 - - - -
160B ARG 3.0 17.7 + - - +
161B THR* 3.9 6.7 - - - +
163B ARG* 1.3 76.5 - - - +
165B GLY* 1.3 61.4 + - - +
167B ARG* 3.7 2.6 - - - +
168B GLY* 3.2 17.7 + - - -
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Residues in contact with GLY 165 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130B GLY* 5.8 0.7 - - - -
161B THR 3.0 16.9 + - - -
162B ALA* 3.9 1.1 - - - -
164B ALA* 1.3 75.4 - - - +
166B TYR* 1.3 62.1 + - - +
168B GLY* 3.3 3.6 + - - -
169B ARG* 2.8 42.3 + - - +
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Residues in contact with TYR 166 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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10B CYS 5.0 4.9 - - - -
13B ASP* 2.7 38.3 + - + -
17B PHE* 3.6 14.4 - + - -
18B ARG* 2.8 19.2 + - - -
127B PHE* 3.6 20.2 - + - -
130B GLY* 3.8 7.1 + - - +
131B ALA* 3.6 44.0 - - + -
134B LEU* 3.5 25.1 - - + -
162B ALA 2.9 19.3 + - - +
163B ARG* 3.9 9.9 - - - +
165B GLY* 1.3 73.4 - - - +
167B ARG* 1.3 66.8 + - + +
169B ARG* 3.4 8.0 + - - +
170B ALA* 2.8 33.9 + - + +
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Residues in contact with ARG 167 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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245A LEU* 6.3 1.1 - - - -
250A LEU* 3.0 40.4 - - + +
253A GLU* 2.4 32.7 + - - +
255A PRO* 4.4 8.3 - - - +
10B CYS 5.4 2.2 - - - +
11B LEU* 3.4 68.7 + - + +
163B ARG* 2.9 38.8 + - - +
164B ALA* 3.7 5.6 - - - +
166B TYR* 1.3 83.8 - - + +
168B GLY* 1.3 62.1 + - - +
170B ALA* 3.3 3.6 + - - +
171B LEU* 3.1 34.8 + - + +
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Residues in contact with GLY 168 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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246A LYS* 4.3 23.1 + - - -
164B ALA 3.2 12.3 + - - -
165B GLY 3.3 4.2 + - - -
167B ARG* 1.3 77.0 - - - +
169B ARG* 1.3 56.2 + - - +
171B LEU* 3.3 4.0 + - - +
172B ASP* 2.9 39.8 + - - +
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Residues in contact with ARG 169 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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123B ALA 5.0 0.9 - - - +
126B ASP* 2.6 54.2 + - + +
127B PHE* 3.8 24.0 - - + +
129B ARG* 4.1 12.3 - - - +
130B GLY* 3.9 15.8 - - - +
165B GLY* 2.8 30.7 + - - +
166B TYR* 3.8 7.4 - - - +
168B GLY* 1.3 73.0 - - - +
170B ALA* 1.3 65.3 + - - +
172B ASP* 4.1 10.4 - - - +
173B TYR* 3.1 25.8 + - - +
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Residues in contact with ALA 170 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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10B CYS* 4.2 14.4 - - + +
17B PHE* 3.7 27.9 - - + -
127B PHE* 3.9 16.1 - - + -
166B TYR* 2.8 26.5 + - + +
167B ARG* 3.8 5.8 - - - +
168B GLY 3.3 0.4 - - - -
169B ARG* 1.3 77.5 - - - +
171B LEU* 1.3 57.5 + - - +
173B TYR* 3.8 2.2 - - - +
174B ALA* 2.8 31.0 + - - +
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Residues in contact with LEU 171 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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242A HIS* 3.3 35.7 - - + +
245A LEU* 4.1 21.5 - - + -
246A LYS* 4.2 17.5 - - + +
7B PHE* 4.0 22.9 - - + -
10B CYS* 4.0 24.5 - - + -
11B LEU* 4.0 20.2 - - + -
167B ARG* 3.1 24.0 + - + +
168B GLY 3.6 4.0 - - - +
170B ALA* 1.3 73.6 - - - +
172B ASP* 1.3 58.3 + - - +
174B ALA* 3.3 3.3 + - + +
175B LEU 2.8 25.3 + - - -
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Residues in contact with ASP 172 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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242A HIS* 5.0 2.1 + - - -
246A LYS* 3.5 19.5 + - - -
123B ALA* 4.3 10.1 - - + -
168B GLY* 2.9 27.0 + - - +
169B ARG* 4.1 10.1 + - - +
171B LEU* 1.3 72.1 - - - +
173B TYR* 1.3 57.6 + - - +
175B LEU* 3.2 8.2 + - - +
176B GLN* 2.8 34.0 + - + +
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Residues in contact with TYR 173 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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21B ILE* 3.6 37.6 + - + +
24B VAL* 5.4 0.3 - - - +
25B GLU* 2.7 36.7 + - - +
120B PHE* 3.5 22.7 - + - -
123B ALA* 3.8 12.5 - - + +
124B ARG* 3.4 36.8 - - + +
127B PHE* 3.6 32.5 - + + -
169B ARG 3.1 19.4 + - - +
170B ALA 3.8 3.6 - - - +
172B ASP* 1.3 78.6 - - - +
174B ALA* 1.3 61.6 + - - +
176B GLN* 3.3 2.7 + - + -
177B ILE* 2.9 42.3 + - + +
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Residues in contact with ALA 174 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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238A MET* 4.7 7.0 - - + -
242A HIS* 5.3 0.7 - - + -
5B LEU* 3.7 32.0 - - + +
10B CYS* 3.8 15.5 - - - -
17B PHE* 5.1 1.3 - - + -
21B ILE* 5.5 1.0 - - - +
170B ALA 2.8 19.1 + - - +
171B LEU* 3.6 5.8 - - + +
173B TYR* 1.3 76.2 - - - +
175B LEU* 1.3 61.7 + - - +
177B ILE* 3.2 13.4 + - - +
178B ASN* 3.0 22.9 + - - +
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Residues in contact with LEU 175 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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235A LYS* 4.3 25.1 - - + +
238A MET* 3.6 42.2 - - + +
239A GLU* 4.5 18.8 - - + -
242A HIS* 3.7 16.8 - - + +
171B LEU 2.8 20.1 + - - +
172B ASP* 3.5 7.0 - - - +
174B ALA* 1.3 71.3 - - - +
176B GLN* 1.3 77.1 + - - +
178B ASN* 3.3 4.2 + - + +
179B VAL* 3.1 34.3 + - + +
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Residues in contact with GLN 176 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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235A LYS* 5.8 1.7 - - - -
119B GLY* 3.6 37.4 - - - +
120B PHE* 3.9 14.1 - - - +
123B ALA* 3.7 15.0 - - + -
172B ASP* 2.8 23.4 + - + +
173B TYR* 3.7 6.1 - - + +
175B LEU* 1.3 87.7 - - - +
177B ILE* 1.3 57.3 + - - +
179B VAL* 3.3 17.5 + - - +
180B ILE* 3.0 37.4 + - - +
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Residues in contact with ILE 177 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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5B LEU* 3.6 26.2 - - + -
21B ILE* 3.5 31.2 - - + -
24B VAL* 3.7 24.0 - - + -
120B PHE* 3.7 21.8 - - + -
173B TYR* 2.9 39.1 + - + +
174B ALA* 3.2 7.4 + - - +
176B GLN* 1.3 73.2 - - - +
178B ASN* 1.3 67.7 + - - +
180B ILE* 3.5 9.2 + - + +
181B GLU* 3.0 25.2 + - + +
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Residues in contact with ASN 178 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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231A SER* 5.3 0.8 + - - -
234A GLU* 5.4 8.9 + - - +
235A LYS* 5.9 5.3 - - - +
238A MET* 4.2 25.4 - - + +
174B ALA 3.0 12.5 + - - +
175B LEU* 3.3 8.0 + - + +
177B ILE* 1.3 76.6 - - - +
179B VAL* 1.3 65.4 + - - +
181B GLU* 3.2 15.0 - - - +
182B ASP* 3.2 35.9 + - - -
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Residues in contact with VAL 179 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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231A SER* 5.8 0.7 - - - -
235A LYS* 3.9 41.7 - - + +
175B LEU* 3.1 23.5 + - + +
176B GLN* 3.5 20.6 - - - +
177B ILE 3.3 0.2 - - - -
178B ASN* 1.3 79.1 - - - +
180B ILE* 1.3 62.0 + - + +
182B ASP* 3.2 6.8 + - - +
183B LYS* 2.9 36.0 + - + +
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Residues in contact with ILE 180 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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24B VAL* 5.2 3.4 - - + -
28B VAL* 3.8 28.9 - - + -
31B LEU* 5.5 6.7 - - + -
112B LEU* 5.6 3.8 - - + +
116B GLY 3.8 22.2 - - - +
117B LEU* 4.0 21.5 - - + -
120B PHE* 3.8 25.8 - - + +
176B GLN* 3.0 24.7 + - - +
177B ILE* 3.6 8.5 - - + +
179B VAL* 1.3 77.6 - - + +
181B GLU* 1.3 64.0 + - - +
183B LYS* 4.1 7.6 - - + -
184B ARG* 2.8 34.7 + - + +
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Residues in contact with GLU 181 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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71A PRO* 4.3 14.7 - - + +
27B GLU* 6.1 0.2 - - - +
177B ILE* 3.0 17.0 + - + +
178B ASN* 3.2 19.0 - - - +
180B ILE* 1.3 82.6 - - + +
182B ASP* 1.3 83.4 + - - +
184B ARG* 3.8 20.3 + - - +
185B LYS* 3.4 52.3 + - - +
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Residues in contact with ASP 182 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
231A SER* 2.7 39.2 + - - +
234A GLU* 4.4 6.5 - - - +
178B ASN* 3.2 25.0 + - - +
179B VAL* 3.7 7.4 - - - +
180B ILE 3.2 0.4 - - - -
181B GLU* 1.3 93.2 - - - +
183B LYS* 1.3 65.8 + - - +
185B LYS* 3.3 12.2 + - - +
186B PHE* 3.1 24.4 + - - +
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Residues in contact with LYS 183 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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111B THR* 6.1 1.1 - - - -
112B LEU* 4.6 9.0 - - + +
115B GLU* 4.9 3.6 + - - +
116B GLY* 3.5 39.8 + - - +
179B VAL* 2.9 27.8 + - + +
180B ILE* 3.4 6.7 + - + +
182B ASP* 1.3 73.4 - - - +
184B ARG* 1.3 66.6 + - - +
186B PHE* 5.1 3.8 - - + -
187B ASP* 2.8 56.8 + - - +
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Residues in contact with ARG 184 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66A LEU 6.0 0.7 - - - -
67A ALA 5.1 2.6 + - - -
69A LEU* 3.9 20.7 + - - -
70A GLY* 4.0 8.8 - - - -
71A PRO* 3.0 43.8 + - - +
76A MET* 4.8 10.1 - - - -
27B GLU* 6.2 0.8 - - - +
31B LEU* 4.0 36.1 - - + -
112B LEU* 4.4 14.3 - - + +
180B ILE* 2.8 22.7 + - + +
181B GLU* 3.8 13.8 + - - +
183B LYS* 1.3 74.0 - - - +
185B LYS* 1.3 90.0 + - - +
187B ASP* 4.1 0.3 - - - +
188B ILE* 3.1 44.7 + - + +
----------------------------------------------------------
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Residues in contact with LYS 185 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71A PRO* 5.1 6.7 + - - +
73A GLU* 2.8 41.9 + - + +
76A MET* 4.1 16.1 - - + +
181B GLU* 3.4 44.1 + - - +
182B ASP* 3.3 13.4 + - - +
183B LYS 3.2 0.4 - - - -
184B ARG* 1.3 102.4 - - - +
186B PHE* 1.3 62.5 + - - +
188B ILE* 4.0 1.6 - - - +
189B MET* 3.2 39.1 + - + +
----------------------------------------------------------
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Residues in contact with PHE 186 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
224A LEU* 3.7 24.5 - - + -
225A HIS* 5.4 1.1 - - - -
227A LEU* 5.9 4.3 - - + -
228A VAL* 3.2 42.0 - - + -
108B GLN* 4.4 5.4 - - - -
182B ASP 3.1 12.9 + - - +
183B LYS* 4.7 3.6 - - + -
185B LYS* 1.3 76.3 - - - +
187B ASP* 1.3 86.5 + - - +
189B MET* 4.3 9.1 - - + +
190B GLU* 2.9 58.4 + - + +
----------------------------------------------------------
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Residues in contact with ASP 187 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107B GLN 5.6 0.4 - - - +
108B GLN* 3.5 34.2 - - - +
109B ILE* 5.1 1.6 - - + -
111B THR* 5.2 2.6 + - - -
112B LEU* 3.8 22.2 - - + +
183B LYS* 2.8 46.0 + - - +
184B ARG 4.1 1.6 - - - +
186B PHE* 1.3 103.1 - - - +
188B ILE* 1.3 61.7 + - - +
191B PHE* 3.0 28.2 + - - +
----------------------------------------------------------
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Residues in contact with ILE 188 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63A ILE* 5.6 2.2 - - + +
66A LEU* 2.9 41.7 - - + +
67A ALA* 4.2 11.4 - - + -
76A MET* 3.8 26.9 - - + -
80A LEU* 4.4 5.8 - - + -
31B LEU* 5.0 2.0 - - + -
35B LEU* 5.2 2.7 - - + -
109B ILE* 5.0 8.7 - - + -
112B LEU* 5.3 4.9 - - + -
184B ARG* 3.1 41.7 + - + +
185B LYS 4.0 2.2 - - - +
187B ASP* 1.3 76.1 - - - +
189B MET* 1.3 60.1 + - - +
191B PHE* 3.2 9.6 + - + +
192B VAL* 2.9 34.4 + - + +
----------------------------------------------------------
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Residues in contact with MET 189 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73A GLU* 4.3 7.9 - - - +
75A MET* 3.8 35.9 - - + +
76A MET* 3.6 44.6 - - + -
79A CYS* 3.8 28.2 - - + -
220A LEU* 4.7 2.1 - - + +
224A LEU* 4.0 21.4 - - + +
227A LEU* 6.2 2.2 - - + -
185B LYS* 3.2 36.3 + - + +
186B PHE* 4.3 1.3 - - - +
188B ILE* 1.3 79.0 - - - +
190B GLU* 1.3 57.0 + - - +
192B VAL* 3.5 2.0 + - - +
193B LEU* 2.9 29.1 + - - +
----------------------------------------------------------
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Residues in contact with GLU 190 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
224A LEU* 3.9 12.9 - - + +
107B GLN* 4.6 4.0 + - - -
108B GLN* 2.9 35.8 + - - +
186B PHE* 2.9 46.5 + - + +
189B MET* 1.3 72.0 - - - +
191B PHE* 1.3 60.4 + - - +
193B LEU* 3.2 9.4 + - + +
194B ARG* 2.9 59.7 + - + +
----------------------------------------------------------
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Residues in contact with PHE 191 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59A PHE* 3.6 17.7 - + - -
63A ILE* 3.8 25.1 - - + -
38B LEU* 3.8 17.7 - - + -
104B THR* 3.6 24.9 - - + -
105B LEU* 3.4 25.1 - - + -
108B GLN* 3.7 8.6 - - + +
109B ILE* 3.5 26.0 - - + -
187B ASP 3.0 22.3 + - - +
188B ILE* 3.3 7.4 - - + +
190B GLU* 1.3 76.8 - - - +
192B VAL* 1.3 73.0 + - + +
194B ARG* 3.2 2.3 + - - +
195B LEU* 3.1 46.8 + - + +
----------------------------------------------------------
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Residues in contact with VAL 192 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63A ILE* 3.8 29.2 - - + -
79A CYS* 4.6 6.1 - - - +
80A LEU* 4.4 17.0 - - + -
83A PHE* 3.5 35.7 - - + -
84A THR* 5.2 1.1 - - + +
87A LEU* 4.6 14.8 - - + -
188B ILE* 2.9 26.3 + - + +
189B MET 4.1 3.1 - - - +
191B PHE* 1.3 81.7 - - + +
193B LEU* 1.3 62.0 + - - +
195B LEU* 3.5 6.4 + - + +
196B VAL* 3.1 22.9 + - - +
----------------------------------------------------------
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Residues in contact with LEU 193 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83A PHE* 3.9 20.1 - - + -
217A ARG* 3.9 36.6 - - + +
220A LEU* 4.3 5.6 - - + -
221A GLY* 3.9 29.4 - - - +
224A LEU* 4.3 12.8 - - + -
189B MET 2.9 19.3 + - - +
190B GLU* 3.7 10.8 - - + +
192B VAL* 1.3 77.2 - - - +
194B ARG* 1.3 58.5 + - + +
196B VAL* 3.3 1.5 + - + -
197B GLU* 2.8 41.4 + - + +
----------------------------------------------------------
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Residues in contact with ARG 194 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100B ALA* 5.1 2.4 + - - +
103B HIS* 4.1 19.8 + - - +
104B THR* 3.4 43.2 - - + +
107B GLN* 2.9 53.9 + - - +
108B GLN* 3.8 1.4 - - - +
190B GLU* 2.9 44.6 + - - +
193B LEU* 1.3 71.5 - - + +
195B LEU* 1.3 65.7 + - - +
197B GLU* 3.8 6.9 - - + +
198B ALA* 3.0 25.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU 195 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59A PHE* 3.9 10.5 - - + -
63A ILE* 3.7 22.0 - - + -
87A LEU* 4.3 18.8 - - + -
97B LEU* 4.9 0.5 - - - +
100B ALA 6.5 0.2 - - - -
101B THR* 3.7 42.2 - - + +
104B THR* 4.2 7.2 - - - +
191B PHE* 3.1 49.1 + - + +
192B VAL* 3.8 10.3 - - - +
193B LEU 3.4 0.2 - - - -
194B ARG* 1.3 75.6 - - - +
196B VAL* 1.3 63.6 + - - +
198B ALA* 3.3 5.2 + - - +
199B GLN* 3.0 29.7 + - + +
----------------------------------------------------------
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Residues in contact with VAL 196 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83A PHE* 3.5 44.2 - - + +
86A SER* 4.7 6.3 - - - +
87A LEU* 4.4 17.7 - - + -
210A LEU* 4.1 15.7 - - + +
213A LEU* 4.6 1.6 - - + -
217A ARG* 3.8 33.0 - - + -
192B VAL 3.1 13.6 + - - +
193B LEU 3.8 3.6 - - - +
195B LEU* 1.3 79.6 - - - +
197B GLU* 1.3 61.6 + - - +
199B GLN* 3.3 9.2 + - + +
200B ALA* 3.0 20.4 + - - +
----------------------------------------------------------
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Residues in contact with GLU 197 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
217A ARG* 2.6 54.5 + - - +
193B LEU* 2.8 35.3 + - + +
194B ARG* 3.9 7.9 - - + +
195B LEU 3.4 0.4 - - - -
196B VAL* 1.3 72.3 - - - +
198B ALA* 1.3 57.8 + - - +
200B ALA* 3.3 4.5 + - - +
201B THR* 3.1 30.8 + - - -
----------------------------------------------------------
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Residues in contact with ALA 198 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97B LEU* 3.6 17.4 - - + +
100B ALA* 3.6 32.8 - - + -
101B THR* 5.1 1.1 - - - +
194B ARG 3.0 18.0 + - - +
195B LEU* 3.8 6.1 - - - +
197B GLU* 1.3 73.0 - - - +
199B GLN* 1.3 67.7 + - - +
200B ALA 3.1 1.3 - - - -
201B THR* 3.6 6.2 + - - +
202B HIS* 3.1 22.3 + - - +
----------------------------------------------------------
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Residues in contact with GLN 199 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87A LEU* 3.8 26.8 - - + +
90A LYS* 3.8 14.8 - - + +
91A LEU* 6.3 1.2 - - - +
210A LEU* 3.8 18.2 - - + -
97B LEU* 3.6 32.0 - - - +
101B THR* 5.3 2.6 + - - -
195B LEU* 3.0 17.4 + - - +
196B VAL* 3.5 8.5 - - + +
198B ALA* 1.3 75.9 - - - +
200B ALA* 1.3 56.4 + - - +
202B HIS* 3.2 3.0 + - - +
203B PHE* 2.8 56.2 + - + -
----------------------------------------------------------
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Residues in contact with ALA 200 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
207A HIS* 4.9 2.0 + - - -
210A LEU* 3.7 17.3 - - + -
217A ARG* 3.3 40.6 - - - +
196B VAL 3.0 13.1 + - - +
197B GLU 3.8 3.4 - - - +
198B ALA 3.1 0.6 - - - -
199B GLN* 1.3 73.9 - - - +
201B THR* 1.3 65.0 + - - +
203B PHE* 3.9 0.7 - - - +
204B GLN* 3.0 27.4 + - - +
----------------------------------------------------------
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Residues in contact with THR 201 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96B GLU* 5.2 3.6 - - - +
197B GLU* 3.1 17.3 + - - -
198B ALA* 3.9 7.4 - - - -
200B ALA* 1.3 75.9 - - - +
202B HIS* 1.3 62.0 + - - +
204B GLN* 3.9 5.2 - - - +
205B GLN* 3.1 46.0 + - + +
----------------------------------------------------------
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Residues in contact with HIS 202 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
202A HIS* 5.1 2.4 + - - -
203A PHE* 3.5 33.8 - + - -
90B LYS 3.8 3.8 - - - -
93B SER* 3.0 34.8 + - - +
94B HIS* 3.4 41.8 + + + -
97B LEU* 3.7 27.6 - - + -
198B ALA 3.1 15.2 + - - +
199B GLN 3.3 7.6 - - - +
201B THR* 1.3 77.0 - - - +
203B PHE* 1.3 85.3 + + - +
205B GLN* 3.9 3.5 - - - +
206B GLY* 3.1 19.4 + - - -
----------------------------------------------------------
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Residues in contact with PHE 203 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90A LYS* 3.7 22.2 - - + -
202A HIS* 3.4 45.5 - + - -
203A PHE* 3.7 21.4 - + - -
206A GLY* 3.4 24.2 - - - -
207A HIS* 3.7 20.2 - - - +
210A LEU* 3.7 13.7 - - + -
97B LEU* 5.4 0.2 - - + -
199B GLN* 2.8 52.4 + - - +
200B ALA 4.3 0.9 - - - +
202B HIS* 1.3 89.4 - + - +
204B GLN* 1.3 58.2 + - - +
207B HIS* 3.0 31.4 + - - +
----------------------------------------------------------
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Residues in contact with GLN 204 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
207A HIS* 3.7 29.8 + - + +
200B ALA 3.0 19.4 + - - +
201B THR* 3.9 3.9 - - - +
203B PHE* 1.3 76.4 - - - +
205B GLN* 1.3 74.3 + - - +
207B HIS* 4.1 1.1 - - - +
208B GLU* 2.9 50.1 + - + +
----------------------------------------------------------
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Residues in contact with GLN 205 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89B HIS* 3.9 17.5 + - + +
93B SER* 2.5 37.7 + - - +
96B GLU* 3.4 24.5 + - - +
201B THR* 3.1 37.9 + - + +
202B HIS* 3.9 4.9 - - - +
204B GLN* 1.3 84.7 + - - +
206B GLY* 1.3 64.3 + - - +
208B GLU* 3.3 8.9 + - - +
209B GLU* 3.1 24.4 + - - +
----------------------------------------------------------
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Residues in contact with GLY 206 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
203A PHE* 3.6 27.6 - - - -
89B HIS* 4.5 2.2 - - - -
90B LYS* 3.7 19.1 - - - -
93B SER* 5.1 1.5 + - - -
202B HIS 3.1 7.9 + - - -
205B GLN* 1.3 79.4 - - - +
207B HIS* 1.3 61.6 + - - +
209B GLU 3.2 2.1 + - - -
210B LEU* 3.0 27.4 + - - +
----------------------------------------------------------
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Residues in contact with HIS 207 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
200A ALA* 4.8 1.8 + - - -
203A PHE* 3.7 19.3 - - - +
204A GLN* 3.5 39.0 + - + +
207A HIS* 3.7 26.2 - + + -
203B PHE 3.0 21.4 + - - +
204B GLN 4.1 2.5 - - - +
206B GLY* 1.3 75.8 - - - +
208B GLU* 1.3 61.1 + - + +
210B LEU* 3.6 4.3 + - - +
211B SER* 2.8 51.5 + - - -
----------------------------------------------------------
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Residues in contact with GLU 208 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204B GLN* 2.9 45.2 + - + +
205B GLN* 3.5 9.2 - - - +
206B GLY 3.2 0.2 - - - -
207B HIS* 1.3 80.1 - - + +
209B GLU* 1.3 65.7 + - + +
211B SER* 3.5 6.0 + - - -
212B ARG* 2.7 68.2 + - - +
----------------------------------------------------------
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Residues in contact with GLU 209 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82B LYS 4.6 1.0 - - - +
85B VAL* 5.2 0.3 - - - +
86B SER* 2.6 41.7 + - - -
89B HIS* 4.0 18.4 - - + +
90B LYS* 2.6 23.7 + - - +
205B GLN 3.1 15.7 + - - +
206B GLY 3.9 0.4 - - - +
208B GLU* 1.3 77.3 - - + +
210B LEU* 1.3 67.5 + - - +
212B ARG* 3.2 20.2 + - + +
213B LEU* 3.4 21.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 210 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
196A VAL* 3.7 38.6 - - + +
199A GLN* 3.7 12.3 - - + -
200A ALA* 3.7 29.8 - - + +
203A PHE* 3.8 13.7 - - + -
86B SER* 4.0 14.6 - - - +
90B LYS* 3.6 25.6 - - + -
206B GLY 3.0 14.5 + - - +
207B HIS* 4.1 4.7 - - - +
209B GLU* 1.3 76.3 - - - +
211B SER* 1.3 59.7 + - - +
213B LEU* 3.2 16.2 + - + +
214B SER 3.3 2.8 + - - -
217B ARG* 3.1 25.9 + - - +
----------------------------------------------------------
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Residues in contact with SER 211 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
207B HIS* 2.8 48.0 + - - -
208B GLU* 3.8 8.3 - - - -
209B GLU 3.2 0.2 - - - -
210B LEU* 1.3 71.4 - - - +
212B ARG* 1.3 65.5 + - - +
213B LEU 3.1 2.0 - - - -
214B SER* 3.2 23.4 + - - +
217B ARG* 4.8 1.6 - - - +
----------------------------------------------------------
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Residues in contact with ARG 212 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
208B GLU* 2.7 59.4 + - - +
209B GLU* 3.2 11.9 + - + +
211B SER* 1.3 77.4 - - - +
213B LEU* 1.3 62.3 + - + +
214B SER 3.3 0.4 + - - -
215B GLN* 4.8 4.9 + - - +
216B TYR* 5.4 0.9 + - - +
----------------------------------------------------------
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Residues in contact with LEU 213 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
196A VAL* 4.7 1.3 - - + -
82B LYS* 4.3 32.3 - - + +
83B PHE* 4.0 22.7 - - + -
86B SER* 3.8 20.2 - - - +
209B GLU* 3.4 30.5 + - - +
210B LEU* 3.2 18.2 + - + +
211B SER 3.1 0.6 - - - -
212B ARG* 1.3 78.6 - - + +
214B SER* 1.3 66.5 + - - +
215B GLN 3.0 3.7 + - - -
216B TYR* 3.1 10.1 + - + +
217B ARG* 2.9 29.8 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il