Contacts of the helix formed by residues 108 - 138 (chain B) in PDB entry 4TKR


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with GLN 108 (chain B).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    103B  ASN*     2.7    34.5    +      -       -      +
    106B  ALA*     3.5    28.9    +      -       +      +
    107B  ASN*     1.3    70.4    -      -       -      +
    109B  LEU*     1.3    59.0    +      -       -      +
    110B  LYS      3.4     2.9    -      -       -      -
    111B  LYS*     3.4    28.6    +      -       +      +
    112B  ALA*     3.0    27.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 109 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    104B  LEU*     4.2    11.9    -      -       +      -
    107B  ASN*     3.2    10.8    +      -       -      +
    108B  GLN*     1.3    74.9    -      -       -      +
    110B  LYS*     1.3    64.0    +      -       -      +
    112B  ALA*     3.2     4.5    +      -       +      +
    113B  ILE*     3.0    51.2    +      -       +      +
    176B  LEU*     3.7    31.9    -      -       +      +
    177B  LYS*     3.6    39.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 110 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    108B  GLN      3.4     0.6    -      -       -      -
    109B  LEU*     1.3    80.2    -      -       -      +
    111B  LYS*     1.3    66.1    +      -       +      +
    113B  ILE*     3.3     8.5    +      -       -      +
    114B  GLU*     3.1    49.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 111 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    103B  ASN*     3.3    25.1    -      -       -      +
    108B  GLN*     3.4    28.6    +      -       +      +
    109B  LEU      3.4     0.2    -      -       -      -
    110B  LYS*     1.3    80.0    -      -       +      +
    112B  ALA*     1.3    65.3    +      -       -      +
    114B  GLU*     3.3    16.0    +      -       -      +
    115B  TRP*     3.1    36.2    +      -       +      +
    308B  BGL      4.8    21.1    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 112 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    100B  VAL*     3.8    32.1    -      -       +      +
    103B  ASN*     3.7    10.7    -      -       +      +
    104B  LEU*     3.8    19.5    -      -       +      +
    108B  GLN      3.0    17.9    +      -       -      +
    109B  LEU*     3.5     9.9    -      -       +      +
    111B  LYS*     1.3    78.1    -      -       -      +
    113B  ILE*     1.3    57.8    +      -       -      +
    115B  TRP*     3.5     1.2    +      -       -      +
    116B  ALA*     3.0    27.6    +      -       -      +
    176B  LEU*     4.4     3.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 113 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    109B  LEU*     3.0    37.5    +      -       +      +
    110B  LYS*     3.7     7.6    -      -       -      +
    112B  ALA*     1.3    73.2    -      -       -      +
    114B  GLU*     1.3    60.9    +      -       -      +
    116B  ALA*     3.2     6.7    +      -       -      +
    117B  TRP*     2.9    50.1    +      -       +      +
    173B  SER*     3.6    33.9    -      -       -      +
    176B  LEU*     3.8    16.2    -      -       +      -
    177B  LYS*     5.8     0.7    -      -       +      -
    306B  BGL      4.1    17.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 114 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    110B  LYS*     3.1    44.4    +      -       +      +
    111B  LYS*     3.6    15.8    -      -       -      +
    113B  ILE*     1.3    76.7    -      -       +      +
    115B  TRP*     1.3    61.4    +      -       -      +
    117B  TRP*     3.5     0.7    +      -       -      +
    118B  GLY*     3.3     9.5    +      -       -      -
    306B  BGL      3.2    72.7    +      -       +      +
    308B  BGL      3.2    25.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with TRP 115 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     96B  PHE*     3.7    45.5    -      +       -      +
     99B  GLN*     3.4    34.7    -      -       +      +
    100B  VAL*     3.7    18.8    -      -       +      +
    103B  ASN*     3.5    26.6    +      -       -      +
    111B  LYS*     3.1    30.8    +      -       +      +
    112B  ALA      3.9     1.1    -      -       -      +
    114B  GLU*     1.3    73.8    -      -       -      +
    116B  ALA*     1.3    60.2    -      -       -      +
    118B  GLY*     3.2     2.3    +      -       -      -
    119B  THR*     2.9    30.5    +      -       -      -
    308B  BGL      3.5    65.1    +      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 116 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     47B  ILE*     4.4    10.3    -      -       +      -
    100B  VAL*     3.6    13.2    -      -       +      +
    112B  ALA      3.0    19.1    +      -       -      +
    113B  ILE*     3.3     6.7    -      -       +      +
    115B  TRP*     1.3    77.6    -      -       -      +
    117B  TRP*     1.3    57.3    +      -       +      +
    119B  THR*     3.2     5.9    -      -       -      +
    120B  MET*     2.9    46.7    +      -       +      +
    172B  ILE*     4.8     0.2    -      -       +      -
    176B  LEU*     3.8    21.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with TRP 117 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    113B  ILE*     2.9    36.3    +      -       +      +
    114B  GLU      3.9     4.7    -      -       -      +
    115B  TRP      3.3     0.2    -      -       -      -
    116B  ALA*     1.3    73.2    -      -       -      +
    118B  GLY*     1.3    60.9    +      -       -      +
    120B  MET*     3.7    11.4    -      -       +      +
    121B  ILE*     2.9    40.8    +      -       +      +
    165B  VAL*     3.6    28.9    -      -       +      -
    166B  LEU*     3.8     9.6    -      -       -      -
    169B  GLY*     3.4    32.1    -      -       -      -
    170B  ILE*     3.6     8.5    -      -       +      -
    173B  SER*     2.9    19.3    +      -       -      -
    306B  BGL      3.5    37.6    -      -       +      +
    307B  BGL      4.4     7.4    -      -       +      -
    310B  BGL      3.7    57.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLY 118 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     96B  PHE*     4.0     9.6    -      -       -      -
    114B  GLU      3.3     8.3    +      -       -      -
    115B  TRP*     3.2     6.5    +      -       -      -
    117B  TRP*     1.3    79.1    -      -       -      +
    119B  THR*     1.3    59.5    +      -       -      +
    121B  ILE*     3.9     2.1    -      -       -      +
    122B  ILE*     3.2    30.3    +      -       -      +
    306B  BGL      4.2     5.1    +      -       -      -
    308B  BGL      4.2    27.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with THR 119 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     43B  TYR*     6.0     0.2    -      -       +      -
     47B  ILE*     4.5    11.4    -      -       +      -
     92B  PHE      3.5     0.3    -      -       -      +
     93B  SER*     2.5    52.2    +      -       -      +
     94B  GLY*     3.7     0.5    -      -       -      -
     95B  VAL*     3.3     6.1    +      -       -      -
     96B  PHE*     3.2    36.9    +      -       -      -
     97B  SER*     5.3     0.4    -      -       -      +
    100B  VAL*     4.5     8.3    -      -       +      -
    115B  TRP      2.9    14.7    +      -       -      +
    116B  ALA*     3.2    23.1    -      -       -      +
    118B  GLY*     1.3    76.2    -      -       -      +
    120B  MET*     1.3    65.5    +      -       +      +
    122B  ILE      4.2     0.4    -      -       -      -
    123B  GLY      3.3     6.9    +      -       -      -
----------------------------------------------------------
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Residues in contact with MET 120 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     43B  TYR*     2.8    68.3    +      -       +      -
     47B  ILE*     5.6     1.6    -      -       +      -
    116B  ALA*     2.9    45.9    +      -       +      +
    117B  TRP*     3.7    18.6    -      -       +      +
    118B  GLY      3.2     0.2    -      -       -      -
    119B  THR*     1.3    82.3    -      -       +      +
    121B  ILE*     1.3    59.5    -      -       -      +
    124B  GLY*     3.0    16.3    +      -       -      -
    165B  VAL*     4.1    10.2    -      -       +      +
    169B  GLY*     3.6    35.9    -      -       -      +
    172B  ILE*     3.7    19.7    -      -       +      -
    173B  SER*     4.7     0.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 121 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    117B  TRP*     2.9    24.8    +      -       +      +
    118B  GLY*     3.9     3.8    -      -       -      +
    120B  MET*     1.3    73.2    -      -       -      +
    122B  ILE*     1.3    67.2    +      -       -      +
    124B  GLY*     3.2     1.6    +      -       -      -
    125B  VAL*     2.9    41.1    +      -       +      +
    165B  VAL*     3.9    23.4    -      -       +      +
    307B  BGL      4.2    19.5    -      -       +      -
    308B  BGL      4.2    21.1    -      -       +      -
    309B  BGL      5.0     9.4    -      -       +      -
    310B  BGL      3.8    31.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 122 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     92B  PHE*     3.6    31.9    -      -       +      +
     95B  VAL*     3.9    13.5    -      -       +      -
     96B  PHE*     3.9    26.7    -      -       +      -
    118B  GLY      3.2    16.6    +      -       -      +
    119B  THR      4.4     0.2    -      -       -      +
    121B  ILE*     1.3    77.9    -      -       +      +
    123B  GLY*     1.3    57.6    +      -       -      +
    125B  VAL*     3.4     5.3    +      -       -      +
    126B  ALA*     2.9    28.3    +      -       +      +
    308B  BGL      4.5    18.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLY 123 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     39B  MET*     4.8     2.3    -      -       -      +
     43B  TYR*     4.8     0.2    -      -       -      -
     89B  PHE      3.8     5.4    -      -       -      +
     90B  ILE*     4.5     1.6    -      -       -      -
     92B  PHE*     3.4     6.7    +      -       -      -
     93B  SER*     3.4    39.5    +      -       -      -
    119B  THR      3.3     9.2    +      -       -      -
    120B  MET      4.1     0.2    -      -       -      -
    121B  ILE      3.3     0.4    -      -       -      -
    122B  ILE*     1.3    77.9    -      -       -      +
    124B  GLY*     1.3    62.1    +      -       -      +
    126B  ALA*     3.3     2.9    +      -       -      +
    127B  ARG*     3.2    21.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 124 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     39B  MET*     4.5     8.1    -      -       -      -
     43B  TYR*     3.9    10.4    +      -       -      -
    120B  MET      3.0    16.0    +      -       -      -
    121B  ILE      3.7     2.7    -      -       -      -
    123B  GLY*     1.3    73.5    -      -       -      +
    125B  VAL*     1.3    59.3    +      -       -      +
    127B  ARG*     3.3     2.4    +      -       -      +
    128B  TYR*     3.0    38.7    +      -       -      -
    161B  CYS*     3.8     7.6    -      -       -      -
    164B  THR*     6.6     0.2    -      -       -      -
    165B  VAL*     4.2    10.3    -      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 125 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    302A  BGL      5.5     6.7    -      -       +      -
    121B  ILE*     2.9    33.8    +      -       +      +
    122B  ILE*     3.8     6.1    -      -       -      +
    124B  GLY*     1.3    74.9    -      -       -      +
    126B  ALA*     1.3    63.0    +      -       -      +
    128B  TYR      3.8     0.6    -      -       -      +
    129B  PHE*     3.0    25.9    +      -       +      +
    161B  CYS*     4.0    15.2    -      -       -      -
    304B  BGL      4.2    20.8    -      -       +      +
    309B  BGL      4.5    14.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 126 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    302A  BGL      4.0    19.1    -      -       +      +
     89B  PHE*     3.2    37.6    -      -       +      +
     92B  PHE*     3.8    22.2    -      -       +      -
    122B  ILE*     2.9    19.4    +      -       +      +
    123B  GLY      3.5     2.5    -      -       -      +
    124B  GLY      3.2     0.4    -      -       -      -
    125B  VAL*     1.3    79.4    -      -       -      +
    127B  ARG*     1.3    58.8    +      -       -      +
    129B  PHE*     3.8     4.3    -      -       -      +
    130B  TRP*     3.4    13.3    +      -       -      -
----------------------------------------------------------
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Residues in contact with ARG 127 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     36B  SER*     3.3    20.8    +      -       -      -
     39B  MET*     3.4    32.6    -      -       +      +
     61B  TRP*     3.6     5.5    -      -       -      -
     86B  ALA*     3.3    40.6    -      -       -      +
     87B  PHE*     3.5    24.1    -      -       -      +
     89B  PHE*     4.1     0.6    +      -       -      -
     90B  ILE*     4.3    14.1    -      -       +      -
    123B  GLY      3.2    11.7    +      -       -      +
    124B  GLY*     3.7     6.7    -      -       -      +
    126B  ALA*     1.3    75.0    -      -       -      +
    128B  TYR*     1.3    79.9    +      -       -      +
    129B  PHE      3.0     9.8    +      -       -      -
    130B  TRP*     3.1    12.8    +      -       -      +
    131B  HIS*     3.1    27.6    +      -       +      +
    301B  TPP      3.2    32.1    +      -       -      -
----------------------------------------------------------
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Residues in contact with TYR 128 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34B  SER      4.1     5.0    +      -       -      -
     36B  SER*     3.8    14.7    -      -       -      -
     39B  MET*     5.4     1.3    -      -       +      -
    124B  GLY*     3.0    30.0    +      -       -      +
    125B  VAL      3.8     0.4    -      -       -      -
    127B  ARG*     1.3   102.9    +      -       -      +
    129B  PHE*     1.3    58.9    +      -       -      +
    130B  TRP      3.3     0.4    -      -       -      -
    131B  HIS*     3.7    26.9    -      +       +      +
    132B  TYR*     3.0    27.9    +      -       -      +
    157B  ASN*     3.6    18.8    -      -       +      +
    160B  SER*     3.7    27.7    +      -       -      -
    161B  CYS*     3.6    17.9    -      -       +      -
    164B  THR*     3.2    27.8    +      -       +      -
    165B  VAL*     6.1     0.2    -      -       +      -
    301B  TPP      4.6     9.2    +      -       -      -
    304B  BGL      3.6    24.0    -      -       +      +
----------------------------------------------------------
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Residues in contact with PHE 129 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     51A  PHE*     3.7    31.0    -      +       -      -
     52A  TRP*     4.0    14.8    -      +       +      -
    302A  BGL      3.9    39.3    -      -       +      -
    125B  VAL*     3.0    18.2    +      -       +      +
    126B  ALA      3.8     7.4    -      -       -      +
    127B  ARG      3.0     0.2    +      -       -      -
    128B  TYR*     1.3    77.4    -      -       -      +
    130B  TRP*     1.3    79.4    +      +       -      +
    132B  TYR*     3.3     5.4    +      +       -      +
    133B  VAL*     2.9    49.3    +      -       +      +
    304B  BGL      4.0    53.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with TRP 130 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     51A  PHE*     3.8    20.4    -      +       -      -
     52A  TRP*     3.3    51.6    -      +       +      -
     55A  GLY*     4.0    14.6    -      -       -      -
     56A  PHE*     5.3     0.4    -      -       +      -
     91A  ALA*     4.1     4.3    -      -       +      -
     81B  ILE*     3.7    19.6    -      -       +      +
     82B  GLU*     4.8     0.4    -      -       -      +
     85B  LEU*     3.6    30.3    -      -       +      -
     86B  ALA*     3.7    31.4    -      -       +      -
     89B  PHE*     3.4    38.7    -      +       -      -
    126B  ALA      3.4    17.0    +      -       -      -
    127B  ARG      3.1     4.7    +      -       -      -
    129B  PHE*     1.3    85.4    -      +       -      +
    131B  HIS*     1.3    61.8    +      -       -      +
    133B  VAL*     3.6     7.0    -      -       +      +
    134B  ALA*     2.9    29.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 131 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     82B  GLU*     3.0    48.4    +      -       -      +
     86B  ALA*     3.5    10.6    -      -       +      +
     87B  PHE*     4.3     0.7    -      +       -      -
    127B  ARG*     3.1    37.8    +      -       +      -
    128B  TYR*     3.5    25.9    +      +       +      +
    129B  PHE      3.3     0.2    -      -       -      -
    130B  TRP*     1.3    74.6    -      -       -      +
    132B  TYR*     1.3    61.3    +      -       -      +
    135B  GLY      2.9    22.0    +      -       -      -
    157B  ASN*     3.2    21.6    +      -       -      +
    301B  TPP      3.0    50.7    +      +       +      +
----------------------------------------------------------
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Residues in contact with TYR 132 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    128B  TYR      3.0    14.5    +      -       -      +
    129B  PHE*     3.4    11.9    -      +       -      +
    130B  TRP      3.3     0.2    -      -       -      -
    131B  HIS*     1.3    75.4    -      -       -      +
    133B  VAL*     1.3    73.7    +      -       +      +
    136B  VAL*     3.1    24.4    +      -       +      +
    150B  GLN*     2.4    45.1    +      -       -      -
    153B  SER*     2.5    31.3    +      -       -      -
    154B  ILE*     3.7    28.0    -      -       +      -
    157B  ASN*     3.3    12.5    -      -       +      +
    304B  BGL      3.5    70.4    +      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 133 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     52A  TRP*     3.9    34.5    -      -       +      -
     81B  ILE*     4.9     8.3    -      -       +      -
    129B  PHE*     2.9    49.5    +      -       +      +
    130B  TRP*     3.6    11.7    -      -       +      +
    132B  TYR*     1.3    86.6    -      -       +      +
    134B  ALA*     1.3    58.3    +      -       -      +
    136B  VAL*     3.2     6.7    +      -       -      +
    137B  LEU*     3.0    47.1    +      -       +      +
    304B  BGL      5.3     1.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 134 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     81B  ILE*     4.2     8.1    -      -       +      -
     82B  GLU*     3.5    35.4    -      -       +      +
    130B  TRP      2.9    18.1    +      -       -      +
    131B  HIS      4.0     0.2    -      -       -      +
    133B  VAL*     1.3    74.6    -      -       -      +
    135B  GLY*     1.3    57.4    +      -       -      +
    138B  PHE*     2.7    59.1    +      -       +      +
    139B  TRP*     3.4     3.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLY 135 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    131B  HIS      2.9    10.5    +      -       -      -
    133B  VAL      3.2     0.6    -      -       -      -
    134B  ALA*     1.3    77.8    -      -       -      +
    136B  VAL*     1.3    57.3    +      -       -      +
    139B  TRP*     3.2    32.7    +      -       -      +
    140B  GLY*     3.7     0.9    +      -       -      -
    149B  ALA      4.1     3.5    -      -       -      +
    152B  PHE*     5.7     0.5    -      -       -      -
    153B  SER*     3.3    22.5    -      -       -      -
    301B  TPP      3.3    24.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 136 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      5A  ARG*     3.2    23.4    +      -       -      +
    132B  TYR*     3.1    34.0    +      -       +      +
    133B  VAL*     3.6     6.3    -      -       -      +
    135B  GLY*     1.3    77.6    -      -       -      +
    137B  LEU*     1.3    65.2    +      -       +      +
    138B  PHE      3.6     0.2    +      -       -      -
    140B  GLY*     4.9     1.6    +      -       -      -
    149B  ALA*     3.5    19.6    -      -       +      +
    150B  GLN*     3.7    29.4    -      -       +      +
    153B  SER*     3.6    13.9    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 137 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      5A  ARG*     3.4    55.2    +      -       +      +
      8A  ILE*     5.9     2.5    -      -       +      -
      9A  LEU*     4.4     6.5    -      -       +      -
     52A  TRP*     3.6    43.5    -      -       +      -
     81B  ILE*     4.2     5.4    -      -       +      -
    133B  VAL*     3.0    28.9    +      -       +      +
    136B  VAL*     1.3    82.8    -      -       +      +
    138B  PHE*     1.3    93.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with PHE 138 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      9A  LEU*     4.0    21.1    -      -       +      -
     74B  LEU*     4.4    15.9    -      -       +      +
     75B  MET*     3.7    28.7    -      -       +      -
     77B  SER*     3.4    29.4    -      -       -      -
     78B  GLN*     3.4    35.9    -      -       +      -
     81B  ILE*     3.9    18.2    -      -       +      -
    134B  ALA*     2.7    34.0    +      -       +      +
    136B  VAL      3.4     0.2    -      -       -      -
    137B  LEU*     1.3    95.9    -      -       +      +
    139B  TRP*     1.3    64.7    +      -       +      +
    140B  GLY      3.2     8.9    +      -       -      -
    141B  ALA*     4.5     4.5    +      -       -      +
    142B  TYR*     5.1     2.3    -      -       -      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il