Contacts of the helix formed by residues 99 - 159 (chain A) in PDB entry 4UY3
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 99 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94A LEU* 2.9 37.9 + - - +
95A LEU* 4.1 0.4 + - - -
97A LYS* 3.3 8.6 + - - +
98A PHE* 1.3 74.0 - - - +
100A PHE* 1.3 58.0 + - - +
101A ASN 3.4 2.7 - - - -
102A ALA* 3.4 10.2 + - - -
103A SER* 2.9 30.3 + - - -
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Residues in contact with PHE 100 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23A MET* 4.0 31.2 - - + -
24A ARG* 4.3 8.5 - - + -
27A LYS* 4.2 28.0 - - + +
95A LEU* 3.7 28.9 - - + -
98A PHE* 3.2 48.4 + + + -
99A SER* 1.3 74.9 - - - +
101A ASN* 1.3 69.1 + - - +
103A SER* 3.6 6.3 + - - -
104A GLN* 3.1 20.8 + - - +
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Residues in contact with ASN 101 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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99A SER 3.4 0.2 - - - -
100A PHE* 1.3 78.4 - - - +
102A ALA* 1.3 60.9 + - - +
104A GLN* 3.0 9.3 + - - +
105A SER* 2.8 31.0 + - - -
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Residues in contact with ALA 102 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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94A LEU* 3.9 18.3 - - + +
99A SER* 3.4 22.8 + - - +
101A ASN* 1.3 77.0 - - - +
103A SER* 1.3 64.4 + - - +
105A SER* 3.1 17.5 + - - -
106A GLU* 3.1 16.8 + - - +
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Residues in contact with SER 103 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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27A LYS* 6.0 2.1 - - - +
31A ILE* 4.2 6.6 - - - +
91A ALA* 2.9 33.4 + - - +
94A LEU* 4.0 9.5 - - - +
95A LEU* 3.7 21.9 - - - +
99A SER 2.9 19.7 + - - -
100A PHE* 3.8 6.1 - - - -
102A ALA* 1.3 76.5 - - - +
104A GLN* 1.3 62.9 + - - +
106A GLU* 3.1 12.5 + - - +
107A ILE* 3.2 15.2 + - - +
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Residues in contact with GLN 104 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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27A LYS* 5.0 13.6 + - + +
30A ILE* 4.3 24.4 - - - +
100A PHE 3.1 14.3 + - - +
101A ASN* 3.0 12.2 + - - +
103A SER* 1.3 75.2 + - - +
105A SER* 1.3 64.4 + - - +
107A ILE* 3.2 14.6 + - - +
108A ASP* 2.9 49.9 + - - +
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Residues in contact with SER 105 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101A ASN 2.8 13.6 + - - -
102A ALA* 3.1 12.7 + - - -
104A GLN* 1.3 76.4 - - - +
106A GLU* 1.3 61.8 + - - +
108A ASP* 3.1 11.9 + - - +
109A ASP* 2.9 36.4 + - - +
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Residues in contact with GLU 106 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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87A LYS* 3.2 54.4 + - - +
90A ASN* 3.1 31.6 + - + +
91A ALA* 4.0 4.5 - - + -
94A LEU* 3.9 19.5 - - + -
102A ALA 3.1 13.4 + - - +
103A SER 3.1 8.5 + - - +
105A SER* 1.3 81.1 - - - +
107A ILE* 1.3 60.0 + - - +
109A ASP* 3.5 8.6 + - - +
110A ALA* 3.0 25.8 + - - +
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Residues in contact with ILE 107 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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30A ILE* 4.3 22.9 - - + +
31A ILE* 4.1 26.9 - - + +
34A ALA* 4.4 12.3 - - + -
88A ILE* 4.3 22.7 - - + -
91A ALA* 3.6 22.2 - - + -
103A SER* 3.2 14.8 + - - +
104A GLN* 3.7 15.0 - - - +
105A SER 3.1 0.6 - - - -
106A GLU* 1.3 78.0 - - - +
108A ASP* 1.3 65.5 + - - +
110A ALA* 3.2 3.1 + - + +
111A ASN* 2.9 38.9 + - - +
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Residues in contact with ASP 108 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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104A GLN* 2.9 42.1 + - - +
105A SER* 3.4 12.0 + - - +
107A ILE* 1.3 76.5 - - - +
109A ASP* 1.3 60.4 + - - +
111A ASN* 3.3 8.0 + - - +
112A GLU* 2.9 30.7 + - - +
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Residues in contact with ASP 109 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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87A LYS* 2.9 37.7 + - - +
105A SER* 2.9 22.2 + - - +
106A GLU* 3.6 9.9 - - - +
108A ASP* 1.3 77.0 - - - +
110A ALA* 1.3 66.0 + - - +
112A GLU* 3.1 17.6 + - - +
113A LEU* 3.0 29.3 + - + +
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Residues in contact with ALA 110 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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34A ALA* 5.3 1.1 - - + -
84A VAL* 4.2 12.0 - - + +
87A LYS* 4.1 17.6 - - + +
88A ILE* 4.5 10.5 - - + -
106A GLU 3.0 14.6 + - - +
107A ILE* 3.5 13.0 - - + +
109A ASP* 1.3 75.7 - - - +
111A ASN* 1.3 56.8 + - - +
113A LEU* 3.1 11.2 + - - +
114A MET* 2.9 44.0 + - + +
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Residues in contact with ASN 111 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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30A ILE* 6.0 0.2 - - - +
34A ALA* 4.8 8.2 - - - +
37A ARG* 2.9 37.6 + - - +
107A ILE* 2.9 40.9 + - - +
108A ASP* 3.7 8.2 + - - +
110A ALA* 1.3 73.5 - - - +
112A GLU* 1.3 60.6 + - - +
114A MET* 3.7 7.7 - - - +
115A ASP* 2.8 36.8 + - - +
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Residues in contact with GLU 112 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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108A ASP 2.9 14.0 + - - +
109A ASP* 3.1 21.6 + - - +
111A ASN* 1.3 75.0 - - - +
113A LEU* 1.3 63.4 + - + +
115A ASP* 3.2 13.8 + - + +
116A SER* 3.2 25.8 + - - +
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Residues in contact with LEU 113 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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79A LYS 4.0 20.0 - - - +
80A TYR* 3.6 32.6 - - + +
83A PRO* 4.1 23.3 - - + -
84A VAL* 4.1 11.7 - - + -
87A LYS* 4.4 22.7 - - + -
109A ASP* 3.0 18.6 + - + +
110A ALA* 3.4 6.5 - - - +
112A GLU* 1.3 78.7 - - + +
114A MET* 1.3 62.2 + - - +
116A SER* 3.2 8.8 + - - -
117A TYR* 3.0 18.4 + - - +
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Residues in contact with MET 114 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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34A ALA* 3.9 20.9 - - + +
37A ARG* 3.6 29.5 + - - +
38A LYS* 3.7 33.9 - - - -
41A ILE* 3.5 20.2 - - + +
80A TYR 5.0 0.2 - - - -
81A LEU* 5.5 0.7 - - + -
84A VAL* 4.1 25.4 - - + -
110A ALA* 2.9 29.5 + - + +
111A ASN* 3.7 20.0 - - - +
113A LEU* 1.3 78.3 - - - +
115A ASP* 1.3 61.5 + - - +
117A TYR* 3.2 7.6 + - - +
118A GLU* 2.9 26.2 + - - +
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Residues in contact with ASP 115 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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37A ARG* 2.7 31.7 + - - +
111A ASN* 2.8 27.7 + - - +
112A GLU* 3.2 15.7 + - + +
114A MET* 1.3 72.4 - - - +
116A SER* 1.3 56.6 + - - +
118A GLU* 3.4 6.2 + - - +
119A GLN* 2.9 29.3 + - - +
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Residues in contact with SER 116 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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80A TYR* 3.6 36.2 - - - -
112A GLU* 3.2 11.1 + - - +
113A LEU* 3.2 10.6 + - - +
115A ASP* 1.3 75.2 - - - +
117A TYR* 1.3 66.3 + - - +
119A GLN* 3.0 9.0 + - - +
120A SER* 2.8 24.1 + - - -
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Residues in contact with TYR 117 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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41A ILE* 3.6 42.7 + - + -
42A GLU* 5.5 1.6 + - - -
44A LEU* 4.5 2.7 - - + -
46A PHE* 3.4 33.7 - + - -
73A ASN* 5.1 0.4 - - - -
76A SER* 4.1 18.4 - - - -
77A THR* 3.7 34.4 + - - +
80A TYR* 4.1 11.3 - - + +
81A LEU* 3.9 29.4 - - + +
113A LEU 3.0 13.0 + - - +
114A MET* 3.6 11.0 - - - +
116A SER* 1.3 74.2 - - - +
118A GLU* 1.3 63.8 + - - +
120A SER* 2.8 26.1 + - - -
121A TYR* 3.1 7.3 + - - +
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Residues in contact with GLU 118 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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37A ARG* 3.5 32.5 + - - +
41A ILE* 3.8 22.2 - - + +
44A LEU* 4.4 11.4 - - + -
114A MET 2.9 14.7 + - - +
115A ASP* 3.5 10.3 - - - +
117A TYR* 1.3 72.7 - - - +
119A GLN* 1.3 63.7 + - - +
121A TYR* 3.1 12.0 + - + +
122A GLN* 3.1 25.9 + - + +
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Residues in contact with GLN 119 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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115A ASP 2.9 18.3 + - - +
116A SER* 3.5 8.5 - - - +
118A GLU* 1.3 76.5 - - - +
120A SER* 1.3 57.5 + - - +
122A GLN* 3.2 17.2 + - - +
123A GLN* 2.9 44.3 + - + +
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Residues in contact with SER 120 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46A PHE* 4.0 13.2 - - - -
73A ASN* 5.2 1.0 + - - -
76A SER* 3.8 26.3 + - - -
80A TYR* 5.1 5.2 - - - -
116A SER 2.8 16.3 + - - -
117A TYR* 2.8 18.6 + - - -
119A GLN* 1.3 73.3 - - - +
121A TYR* 1.3 62.2 + - - +
123A GLN* 3.6 9.0 + - - +
124A GLN* 3.3 25.3 + - - +
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Residues in contact with TYR 121 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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44A LEU* 4.0 31.6 - - + -
45A PRO* 3.2 50.6 + - + +
46A PHE* 3.6 37.9 - + + -
49A ASN* 4.7 3.5 - - + +
117A TYR 3.1 3.0 + - - +
118A GLU* 3.1 10.9 + - + +
120A SER* 1.3 80.5 + - - +
122A GLN* 1.3 72.4 + - - +
124A GLN* 2.8 24.8 + - + +
125A LEU* 3.0 50.6 + - + +
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Residues in contact with GLN 122 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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118A GLU* 3.1 17.4 + - + +
119A GLN* 3.2 25.3 + - - +
121A TYR* 1.3 93.7 - - - +
123A GLN* 1.3 63.0 + - - +
125A LEU* 3.3 22.5 + - - +
126A GLU* 3.2 23.7 + - - +
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Residues in contact with GLN 123 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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119A GLN* 2.9 30.3 + - + +
120A SER* 3.7 10.1 - - - +
122A GLN* 1.3 77.4 - - - +
124A GLN* 1.3 57.3 + - + +
126A GLU* 3.8 21.3 + - - +
127A ASP* 3.0 62.5 + - - +
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Residues in contact with GLN 124 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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46A PHE* 3.6 12.3 - - + +
49A ASN* 3.1 17.8 - - - +
50A LEU* 4.0 10.9 - - - +
69A MET* 3.3 50.8 + - + +
72A ASP* 4.4 8.5 + - - +
73A ASN* 3.0 36.5 + - - +
120A SER 3.3 13.9 + - - +
121A TYR* 2.8 12.3 + - + +
123A GLN* 1.3 78.3 - - + +
125A LEU* 1.3 65.2 + - - +
126A GLU 3.0 1.3 - - - -
127A ASP* 5.0 2.7 - - - +
128A VAL* 3.1 21.7 + - - +
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Residues in contact with LEU 125 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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49A ASN* 3.6 28.4 + - + +
121A TYR* 3.0 55.4 + - + +
122A GLN* 3.3 24.9 + - - +
124A GLN* 1.3 74.4 - - - +
126A GLU* 1.3 58.4 + - - +
128A VAL* 4.0 0.9 - - - +
129A ASN* 2.8 43.0 + - - +
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Residues in contact with GLU 126 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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122A GLN 3.2 14.3 + - - +
123A GLN* 3.8 23.5 + - - +
124A GLN 3.0 0.4 - - - -
125A LEU* 1.3 78.0 - - + +
127A ASP* 1.3 66.0 + - - +
128A VAL 3.2 0.2 + - - -
129A ASN* 3.3 8.5 + - + +
130A GLU* 3.0 24.9 + - + +
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Residues in contact with ASP 127 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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65A LYS* 6.4 0.7 - - + -
69A MET* 3.8 29.9 - - + +
123A GLN* 3.0 47.8 + - - +
124A GLN* 3.9 2.0 - - - +
126A GLU* 1.3 77.0 - - - +
128A VAL* 1.3 58.9 + - - +
130A GLU* 3.5 17.1 - - - +
131A ILE* 3.5 28.4 + - + +
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Residues in contact with VAL 128 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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49A ASN* 3.6 22.7 - - - +
50A LEU* 4.1 11.4 - - + -
52A GLN* 3.7 26.0 - - + +
53A LEU* 4.1 21.5 - - + -
69A MET* 3.8 19.5 - - + -
124A GLN 3.1 17.9 + - - +
125A LEU 4.1 0.9 - - - +
127A ASP* 1.3 74.7 - - - +
129A ASN* 1.3 66.1 + - - +
130A GLU 3.1 1.6 - - - -
131A ILE* 3.0 8.3 + - - +
132A ILE* 2.9 31.5 + - + +
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Residues in contact with ASN 129 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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49A ASN* 5.6 1.0 + - - -
52A GLN* 5.1 4.7 + - - +
125A LEU* 2.8 35.5 + - - +
126A GLU* 3.6 7.8 - - + +
128A VAL* 1.3 77.2 - - - +
130A GLU* 1.3 63.2 + - - +
132A ILE* 3.3 18.0 + - - +
133A ALA* 2.9 25.2 + - - +
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Residues in contact with GLU 130 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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126A GLU* 3.0 12.8 + - + +
127A ASP* 3.5 21.7 - - - +
128A VAL 3.1 0.2 - - - -
129A ASN* 1.3 75.0 - - - +
131A ILE* 1.3 60.3 + - + +
133A ALA* 3.1 8.8 + - + +
134A LEU* 2.9 44.2 + - + +
193A TYR* 6.3 0.2 - - + -
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Residues in contact with ILE 131 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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53A LEU* 3.6 35.2 - - + -
56A LEU* 4.2 2.9 - - + -
62A THR* 5.0 3.4 - - + +
65A LYS* 4.2 21.1 - - + -
69A MET* 5.2 3.4 - - - -
127A ASP* 3.5 18.6 - - + +
128A VAL* 3.0 7.7 + - - +
130A GLU* 1.3 75.2 - - + +
132A ILE* 1.3 66.0 + - - +
134A LEU* 3.2 6.8 + - - +
135A TYR* 3.1 44.5 + - + -
193A TYR* 3.6 40.2 - - + +
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Residues in contact with ILE 132 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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52A GLN* 3.9 31.4 - - + +
53A LEU* 5.4 0.7 - - + -
56A LEU* 4.6 23.3 - - + -
128A VAL* 2.9 31.3 + - + +
129A ASN* 3.6 17.3 - - - +
131A ILE* 1.3 75.8 - - + +
133A ALA* 1.3 62.3 + - - +
135A TYR* 3.3 4.8 + - - +
136A LYS* 3.1 26.1 + - + +
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Residues in contact with ALA 133 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129A ASN 2.9 17.4 + - - +
130A GLU* 3.1 8.9 + - - +
132A ILE* 1.3 78.6 - - - +
134A LEU* 1.3 58.3 + - + +
136A LYS* 3.5 9.6 + - + +
137A ASP* 2.9 39.0 + - - +
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Residues in contact with LEU 134 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130A GLU* 2.9 32.7 + - + +
131A ILE 3.2 7.6 + - - +
133A ALA* 1.3 77.4 - - + +
135A TYR* 1.3 59.8 + - - +
137A ASP* 4.4 4.5 - - + +
138A ASN* 2.8 40.6 + - - +
193A TYR* 3.8 35.9 - - + +
194A VAL* 5.3 3.8 - - + -
197A HIS* 3.8 38.6 - - + +
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Residues in contact with TYR 135 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56A LEU* 3.8 46.0 - - + -
57A ASN* 3.5 29.1 + - - -
62A THR* 2.7 26.3 + - + -
131A ILE* 3.1 28.5 + - + +
132A ILE 3.7 7.4 - - - +
134A LEU* 1.3 76.9 - - - +
136A LYS* 1.3 62.8 + - - +
138A ASN* 3.7 6.7 - - - +
139A ASP* 3.1 30.2 + - - +
188A LYS* 4.7 23.3 - - + -
191A GLY* 3.6 10.2 - - - -
193A TYR* 3.5 28.7 - - + -
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Residues in contact with LYS 136 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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132A ILE* 3.1 18.7 + - + +
133A ALA* 3.6 9.2 - - + +
135A TYR* 1.3 78.2 - - - +
137A ASP* 1.3 70.8 + - - +
139A ASP* 3.4 6.7 + - - +
140A GLU* 3.0 49.5 + - + +
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Residues in contact with ASP 137 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133A ALA* 2.9 23.0 + - - +
134A LEU* 4.4 5.2 - - + +
136A LYS* 1.3 90.6 - - - +
138A ASN* 1.3 61.4 + - - +
140A GLU* 3.1 21.8 + - - +
141A LEU* 3.0 36.5 + - + +
197A HIS* 5.2 9.4 - - + -
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Residues in contact with ASN 138 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134A LEU* 2.8 27.9 + - - +
135A TYR* 3.7 7.2 - - - +
137A ASP* 1.3 74.2 - - - +
139A ASP* 1.3 61.2 + - - +
141A LEU* 3.4 3.2 + - - +
142A TYR* 3.0 19.2 + - - +
184A TYR* 3.3 23.8 + - + +
193A TYR* 3.1 31.5 + - - +
196A ALA* 3.7 10.6 - - - +
197A HIS* 2.8 45.0 + - - +
200A ILE* 4.3 7.9 - - - +
----------------------------------------------------------
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Residues in contact with ASP 139 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135A TYR* 3.1 17.6 + - - +
136A LYS* 3.8 5.8 - - - +
137A ASP 3.3 0.2 - - - -
138A ASN* 1.3 76.7 - - - +
140A GLU* 1.3 65.8 + - - +
142A TYR* 3.7 5.8 - - - +
143A ASP* 3.0 34.4 + - - +
184A TYR* 2.5 30.6 + - - -
188A LYS* 3.1 31.8 + - - +
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Residues in contact with GLU 140 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136A LYS* 3.0 42.7 + - + +
137A ASP* 3.1 25.5 + - - +
139A ASP* 1.3 76.8 - - - +
141A LEU* 1.3 63.6 + - + +
143A ASP* 3.4 7.5 + - - +
144A LYS* 3.2 21.1 + - - +
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Residues in contact with LEU 141 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137A ASP* 3.0 18.8 + - + +
138A ASN 3.4 4.0 + - - +
140A GLU* 1.3 74.7 - - + +
142A TYR* 1.3 67.0 + - - +
144A LYS* 3.1 8.8 + - + +
145A CYS* 2.9 26.9 + - - -
197A HIS* 4.3 22.4 - - + +
200A ILE* 3.8 30.3 - - + +
201A ALA* 4.4 11.2 - - + +
204A ASN* 3.5 35.9 - - + +
----------------------------------------------------------
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Residues in contact with TYR 142 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138A ASN 3.0 16.4 + - - +
139A ASP* 3.7 7.9 - - - +
140A GLU 3.3 0.2 - - - -
141A LEU* 1.3 78.4 - - - +
143A ASP* 1.3 75.2 + - - +
145A CYS* 3.1 2.3 + - - -
146A LYS* 2.9 53.6 + - + +
181A LEU* 3.8 40.6 - - + +
184A TYR* 3.4 39.7 - + + -
185A GLU* 3.3 33.9 + - + +
200A ILE* 3.8 12.9 - - + +
----------------------------------------------------------
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Residues in contact with ASP 143 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139A ASP* 3.0 27.1 + - - +
140A GLU* 3.8 6.9 - - - +
141A LEU 3.3 0.2 - - - -
142A TYR* 1.3 89.6 - - - +
144A LYS* 1.3 61.1 + - - +
146A LYS* 3.5 20.9 + - - +
147A VAL* 3.3 29.1 + - + +
----------------------------------------------------------
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Residues in contact with LYS 144 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140A GLU 3.2 11.9 + - - +
141A LEU* 3.1 12.5 + - + +
142A TYR 3.1 0.4 - - - -
143A ASP* 1.3 79.1 - - - +
145A CYS* 1.3 56.9 + - - +
147A VAL* 3.4 6.0 + - - +
148A ASP* 3.0 58.4 + - - +
204A ASN* 3.3 28.5 + - - +
208A LYS* 4.3 11.1 - - - +
211A ARG* 3.8 12.7 - - - +
----------------------------------------------------------
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Residues in contact with CYS 145 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141A LEU 2.9 20.1 + - - +
142A TYR 3.1 4.5 + - - +
144A LYS* 1.3 73.7 - - - +
146A LYS* 1.3 66.3 + - - +
148A ASP* 4.4 2.0 - - - -
149A TYR* 3.0 25.6 + - - +
181A LEU* 3.9 17.2 - - + +
200A ILE* 4.1 9.9 - - + -
203A LEU* 4.0 11.7 - - + -
204A ASN* 3.8 43.1 - - - -
207A MET* 3.3 18.9 - - - +
----------------------------------------------------------
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Residues in contact with LYS 146 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142A TYR* 2.9 59.1 + - + +
143A ASP* 3.7 22.4 + - - +
145A CYS* 1.3 76.2 - - - +
147A VAL* 1.3 65.9 + - + +
149A TYR* 3.4 2.5 + - - +
150A ARG* 3.1 60.3 + - - +
181A LEU* 4.1 17.4 - - + +
----------------------------------------------------------
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Residues in contact with VAL 147 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143A ASP* 3.3 16.7 + - + +
144A LYS* 3.7 8.3 - - - +
145A CYS 3.2 0.4 - - - -
146A LYS* 1.3 79.5 - - + +
148A ASP* 1.3 62.1 + - - +
150A ARG* 3.4 18.3 + - - +
151A GLU* 3.0 44.1 + - + +
----------------------------------------------------------
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Residues in contact with ASP 148 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
144A LYS* 3.0 53.6 + - - +
145A CYS* 4.4 1.1 - - - -
147A VAL* 1.3 76.4 - - - +
149A TYR* 1.3 59.6 + - - +
151A GLU* 3.2 14.8 + - - +
152A MET* 2.9 34.3 + - - +
204A ASN* 4.1 4.3 - - - +
207A MET* 3.7 17.6 - - + +
211A ARG* 3.4 32.7 + - - +
----------------------------------------------------------
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Residues in contact with TYR 149 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145A CYS 3.0 18.6 + - - +
146A LYS* 3.5 5.8 - - - +
148A ASP* 1.3 71.5 - - - +
150A ARG* 1.3 79.0 + - - +
152A MET* 3.3 4.7 + - - +
153A LYS* 2.9 58.5 + - + +
174A ILE* 3.4 39.9 - - + -
175A GLU* 4.7 4.8 - - - -
177A PHE* 4.1 11.2 - - + -
178A GLU* 3.5 45.5 + - + +
181A LEU* 4.2 19.7 - - + -
207A MET* 3.1 14.1 - - + +
----------------------------------------------------------
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Residues in contact with ARG 150 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146A LYS* 3.1 53.1 + - - +
147A VAL* 3.4 19.6 - - - +
149A TYR* 1.3 94.6 - - + +
151A GLU* 1.3 61.7 + - + +
153A LYS* 3.5 9.6 + - + +
154A ARG* 3.1 24.1 + - - +
----------------------------------------------------------
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Residues in contact with GLU 151 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147A VAL* 3.0 33.3 + - - +
148A ASP* 3.8 14.2 - - - +
149A TYR 3.2 0.2 - - - -
150A ARG* 1.3 76.4 - - + +
152A MET* 1.3 58.4 + - + +
154A ARG* 3.4 9.8 + - - +
155A ASP* 2.9 29.4 + - - +
211A ARG* 5.9 4.8 - - - -
----------------------------------------------------------
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Residues in contact with MET 152 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148A ASP 2.9 21.7 + - - +
149A TYR 3.8 2.7 - - - +
151A GLU* 1.3 74.0 - - - +
153A LYS* 1.3 64.3 + - - +
155A ASP* 3.1 7.4 + - - +
156A VAL* 3.1 27.9 + - - +
174A ILE* 3.9 19.9 - - + +
177A PHE* 3.6 18.4 - - + -
207A MET* 4.3 10.1 - - - +
210A LEU* 3.6 40.2 - - + -
211A ARG* 3.4 44.2 - - + -
214A MET* 4.0 14.9 - - + +
----------------------------------------------------------
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Residues in contact with LYS 153 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149A TYR* 2.9 49.8 + - + +
150A ARG* 3.7 9.6 - - + +
152A MET* 1.3 75.3 - - - +
154A ARG* 1.3 57.6 + - - +
156A VAL* 3.8 3.1 + - - +
157A LEU* 3.1 54.0 + - + +
174A ILE* 4.0 18.3 - - + +
----------------------------------------------------------
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Residues in contact with ARG 154 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150A ARG 3.1 17.7 + - - +
151A GLU* 3.7 8.2 + - - +
153A LYS* 1.3 76.5 - - - +
155A ASP* 1.3 64.4 + - - +
157A LEU* 4.1 6.0 - - + +
158A ALA* 2.9 49.7 + - + +
159A ASN* 3.8 23.8 - - - +
----------------------------------------------------------
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Residues in contact with ASP 155 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151A GLU 2.9 17.2 + - - +
152A MET* 3.1 6.7 + - - +
154A ARG* 1.3 79.8 + - - +
156A VAL* 1.3 58.4 + - - +
159A ASN* 2.8 50.5 + - - +
162A GLN* 4.5 3.1 - - - +
163A PHE* 4.0 12.4 - - - -
214A MET* 3.8 21.7 - - + +
----------------------------------------------------------
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Residues in contact with VAL 156 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152A MET 3.1 8.0 + - - +
153A LYS* 4.0 4.7 - - - +
155A ASP* 1.3 76.9 - - - +
157A LEU* 1.3 68.6 + - + +
160A ARG* 3.0 34.3 + - - +
163A PHE* 4.4 11.7 - - + -
167A ALA* 4.6 7.6 - - + +
170A LEU* 4.1 18.2 - - + -
171A GLU* 4.1 33.7 - - + -
174A ILE* 3.7 28.5 - - + -
214A MET* 4.1 11.2 - - + -
----------------------------------------------------------
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Residues in contact with LEU 157 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153A LYS* 3.1 50.2 + - + +
154A ARG* 3.3 6.5 + - + +
156A VAL* 1.3 81.5 - - + +
158A ALA* 1.3 58.2 + - + +
160A ARG* 4.8 5.1 + - - +
171A GLU* 3.2 29.2 - - + +
----------------------------------------------------------
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Residues in contact with ALA 158 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154A ARG* 2.9 46.7 + - + +
157A LEU* 1.3 80.9 - - + +
159A ASN* 1.3 67.0 + - - +
160A ARG* 3.6 2.0 - - - -
161A HIS* 4.2 8.1 + - - -
----------------------------------------------------------
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Residues in contact with ASN 159 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154A ARG* 3.8 20.8 - - - +
155A ASP* 2.8 33.8 + - - +
156A VAL 3.6 3.4 - - - -
158A ALA* 1.3 84.0 - - - +
160A ARG* 1.3 66.2 + - - +
161A HIS* 3.5 15.9 + - - -
162A GLN* 3.2 30.3 + - + +
163A PHE* 3.2 16.4 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il