Contacts of the helix formed by residues 1341 - 1384 (chain B) in PDB entry 4Z4Q
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY1341 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1229B TYR 3.7 9.4 - - - -
1230B GLU 4.7 6.4 + - - -
1231B THR 4.9 0.8 - - - -
1232B GLY 4.3 7.8 - - - +
1329B MET* 3.6 11.0 - - - -
1340B VAL* 1.3 76.2 - - - +
1342B ILE* 1.3 55.2 + - - -
1343B VAL 2.6 19.3 + - - -
1344B PRO* 2.8 20.3 - - - +
1345B ILE* 3.2 12.2 + - - +
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Residues in contact with ILE1342 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1163B LEU* 3.7 36.6 - - + -
1201B ILE* 4.1 9.6 - - + -
1204B LEU* 3.5 32.8 - - + -
1205B MET* 6.5 0.2 - - + -
1208B LEU* 3.8 24.9 - - + -
1229B TYR* 3.1 46.3 + - + +
1329B MET* 3.9 6.2 - - + +
1341B GLY* 1.3 69.4 - - - -
1343B VAL* 1.3 63.3 + - + +
1345B ILE* 3.9 4.1 - - + +
1346B LEU* 3.1 40.6 + - + +
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Residues in contact with VAL1343 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1193B MET* 3.7 20.7 - - + +
1199B ALA 4.1 12.8 - - - +
1201B ILE* 4.1 15.0 - - + -
1204B LEU* 3.7 28.0 - - + -
1229B TYR 4.6 0.6 + - - -
1341B GLY 2.6 8.3 + - - -
1342B ILE* 1.3 77.2 - - + +
1344B PRO* 1.3 74.7 - - + +
1345B ILE 3.2 1.1 - - - -
1347B SER* 3.0 27.0 + - - +
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Residues in contact with PRO1344 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1033B ILE* 3.8 3.3 - - + +
1338B ARG* 3.6 30.2 + - - +
1340B VAL* 3.8 16.4 - - + -
1341B GLY* 2.8 31.2 - - - +
1343B VAL* 1.3 91.5 - - + +
1345B ILE* 1.3 59.9 + - - +
1347B SER* 3.4 5.4 + - - +
1348B SER* 3.0 29.3 + - - -
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Residues in contact with ILE1345 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1033B ILE* 3.9 13.7 - - + +
1160B PRO* 6.3 1.8 - - + -
1162B LEU* 4.1 31.0 - - + -
1163B LEU* 3.7 37.9 - - + -
1178B ILE* 5.1 1.1 - - + -
1329B MET* 4.0 27.1 - - + -
1340B VAL* 3.8 22.0 - - + -
1341B GLY 3.2 18.0 + - - +
1342B ILE* 3.9 4.3 - - - +
1344B PRO* 1.3 74.6 - - - +
1346B LEU* 1.3 69.8 + - + +
1347B SER 3.1 0.3 + - - -
1348B SER* 3.1 4.0 + - - -
1349B TYR* 2.9 23.6 + - + +
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Residues in contact with LEU1346 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1160B PRO* 5.0 7.0 - - + -
1163B LEU* 3.8 24.5 - - + -
1186B VAL* 4.4 13.5 - - + +
1189B ALA* 3.6 36.8 - - + +
1190B ALA* 4.2 13.7 - - + +
1193B MET* 3.9 17.3 - - + -
1204B LEU* 4.7 14.1 - - + -
1208B LEU* 5.4 0.7 - - + -
1342B ILE* 3.1 29.0 + - + +
1343B VAL 3.5 0.4 + - - -
1345B ILE* 1.3 80.8 - - + +
1347B SER* 1.3 58.0 + - - +
1349B TYR* 3.4 6.8 + - + +
1350B ILE* 3.0 35.2 + - + +
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Residues in contact with SER1347 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1193B MET* 3.2 27.1 - - - +
1343B VAL* 3.0 14.1 + - - +
1344B PRO* 3.4 7.1 + - - +
1346B LEU* 1.3 74.8 - - - +
1348B SER* 1.3 61.5 + - - +
1350B ILE* 3.1 8.8 + - - +
1351B ALA* 2.7 36.3 + - - +
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Residues in contact with SER1348 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1033B ILE* 3.8 25.8 - - - +
1034B ARG* 4.1 8.3 - - - +
1333B ASP* 3.5 22.2 + - - -
1338B ARG* 5.3 1.9 + - - -
1344B PRO 3.0 17.3 + - - -
1345B ILE 3.4 3.8 - - - -
1347B SER* 1.3 83.8 + - - +
1349B TYR* 1.3 59.8 + - - +
1351B ALA* 3.7 7.3 - - - +
1352B HIS* 3.1 23.7 + - - +
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Residues in contact with TYR1349 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1033B ILE 5.0 2.6 + - - +
1034B ARG* 3.8 20.6 - - - +
1157B ALA* 2.9 32.4 + - + -
1158B ALA 3.1 19.9 + - - -
1159B PHE* 3.2 5.6 + - - -
1160B PRO* 3.6 47.3 - - + -
1190B ALA* 4.9 10.8 - - + -
1194B ILE* 6.4 1.3 - - + -
1345B ILE* 2.9 14.9 + - + +
1346B LEU* 3.5 12.1 - - + +
1348B SER* 1.3 72.6 - - - +
1350B ILE* 1.3 64.5 - - + +
1352B HIS* 3.1 9.2 + + - +
1353B ARG* 2.8 57.3 + - + +
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Residues in contact with ILE1350 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1190B ALA* 3.7 16.4 - - + +
1193B MET* 4.0 24.5 - - + +
1194B ILE* 3.2 44.2 - - + +
1346B LEU 3.0 17.0 + - - +
1347B SER* 3.4 9.9 - - - +
1349B TYR* 1.3 83.6 - - + +
1351B ALA* 1.3 62.6 + - - +
1353B ARG* 3.4 6.7 + - - +
1354B ARG* 3.1 22.4 + - + +
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Residues in contact with ALA1351 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1347B SER 2.7 19.3 + - - +
1348B SER* 3.7 8.7 - - - +
1350B ILE* 1.3 74.4 - - - +
1352B HIS* 1.3 58.2 + - - +
1354B ARG* 3.1 28.2 - - - +
1355B GLU* 3.1 16.0 + - - +
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Residues in contact with HIS1352 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1034B ARG* 3.5 36.3 + - + +
1139B VAL* 4.4 4.0 - - + -
1140B PRO* 6.2 0.2 - - + -
1154B VAL* 3.6 26.6 - - + +
1155B LEU 2.9 27.0 + - - -
1156B PRO 3.7 16.7 + - - -
1157B ALA* 4.2 10.3 - - + +
1348B SER 3.1 12.5 + - - +
1349B TYR* 3.2 11.2 - + - +
1351B ALA* 1.3 74.3 - - - +
1353B ARG* 1.3 67.9 + - + +
1354B ARG 2.9 6.1 + - - -
1355B GLU* 3.1 12.2 + - - +
1356B VAL* 3.0 34.0 + - + +
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Residues in contact with ARG1353 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1132B GLN* 4.4 10.9 + - - -
1156B PRO* 2.7 35.2 + - - +
1157B ALA 3.1 25.5 + - - -
1158B ALA* 3.7 12.5 + - - +
1349B TYR* 2.8 49.8 + - + +
1350B ILE* 3.7 7.6 - - - +
1352B HIS* 1.3 73.9 - - - +
1354B ARG* 1.3 56.2 + - - +
1356B VAL* 3.8 17.5 - - - +
1357B ILE* 3.1 53.6 + - + +
1360B ARG* 3.9 22.4 - - - +
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Residues in contact with ARG1354 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1350B ILE* 3.1 13.7 + - + +
1351B ALA* 3.1 17.3 - - - +
1352B HIS 2.9 0.8 - - - -
1353B ARG* 1.3 76.7 - - - +
1355B GLU* 1.3 88.9 + - - +
1357B ILE* 4.0 4.5 - - - +
1358B LEU* 3.0 58.3 + - + +
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Residues in contact with GLU1355 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1138B THR 4.9 2.0 - - - +
1351B ALA 3.1 13.1 + - - +
1352B HIS* 3.1 13.8 + - + +
1354B ARG* 1.3 102.8 + - - +
1356B VAL* 1.3 57.8 + - + +
1358B LEU* 3.8 3.0 - - - +
1359B ALA* 2.9 30.4 + - - +
1362B ARG* 4.3 11.6 + - - -
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Residues in contact with VAL1356 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1133B ASP* 5.4 4.9 - - + +
1138B THR* 3.7 40.2 - - + +
1156B PRO* 4.0 19.5 - - + +
1352B HIS* 3.0 41.5 + - + +
1353B ARG* 3.8 26.5 - - - +
1354B ARG 3.2 0.2 - - - -
1355B GLU* 1.3 73.1 - - + +
1357B ILE* 1.3 59.6 + - + +
1359B ALA* 2.9 4.9 + - - +
1360B ARG* 2.7 36.8 + - + +
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Residues in contact with ILE1357 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1353B ARG* 3.1 39.4 + - + +
1354B ARG* 4.1 3.4 - - - +
1356B VAL* 1.3 75.4 - - - +
1358B LEU* 1.3 63.5 + - + +
1360B ARG* 3.8 35.3 - - - +
1361B SER* 2.7 39.0 + - - +
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Residues in contact with LEU1358 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1354B ARG* 3.0 64.2 + - + +
1355B GLU* 3.8 4.0 - - - +
1357B ILE* 1.3 78.6 - - + +
1359B ALA* 1.3 66.9 + - - +
1361B SER* 3.0 9.1 + - - -
1362B ARG* 2.9 46.7 + - - +
----------------------------------------------------------
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Residues in contact with ALA1359 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1136B LYS 4.1 1.7 - - - +
1137B LYS 3.6 9.2 - - - +
1138B THR* 3.5 28.0 - - - +
1355B GLU 2.9 18.3 + - - +
1356B VAL 3.3 8.3 - - - +
1358B LEU* 1.3 71.8 - - - +
1360B ARG* 1.3 62.2 + - - +
1362B ARG* 3.1 24.9 + - - +
1363B PHE* 3.1 22.9 + - - +
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Residues in contact with ARG1360 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1132B GLN* 4.8 3.4 + - - -
1133B ASP* 3.0 28.4 + - - +
1136B LYS* 3.9 28.0 - - + +
1138B THR* 3.5 16.1 - - + +
1353B ARG* 3.9 13.9 - - - +
1356B VAL* 2.7 20.9 + - + +
1357B ILE* 3.8 40.2 - - - +
1359B ALA* 1.3 71.6 - - - +
1361B SER* 1.3 66.3 + - - +
1363B PHE* 3.0 19.4 + - - +
1364B ASP* 3.0 23.6 + - - +
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Residues in contact with SER1361 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1357B ILE* 2.7 26.7 + - - +
1358B LEU* 3.0 8.8 + - - -
1360B ARG* 1.3 82.8 + - - +
1362B ARG* 1.3 65.2 + - - +
1364B ASP* 4.2 4.9 - - - +
1365B LYS* 3.0 26.2 + - - +
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Residues in contact with ARG1362 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1355B GLU* 4.3 12.9 + - - -
1358B LEU* 2.9 38.0 + - - +
1359B ALA* 3.1 41.0 + - - +
1361B SER* 1.3 75.6 - - - +
1363B PHE* 1.3 63.9 + - - +
1365B LYS* 3.2 11.4 + - - +
1366B GLU* 3.1 24.5 + - - +
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Residues in contact with PHE1363 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1135B GLU* 4.2 12.3 - - + -
1136B LYS* 3.4 46.4 - - + +
1137B LYS* 3.9 29.2 - - + -
1359B ALA 3.1 7.7 + - - +
1360B ARG 3.0 10.2 + - - +
1362B ARG* 1.3 79.2 - - - +
1364B ASP* 1.3 77.2 - - - +
1366B GLU* 3.2 6.0 + - - +
1367B LYS* 3.2 39.0 + - + +
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Residues in contact with ASP1364 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1136B LYS* 3.1 41.6 + - - +
1360B ARG* 3.0 25.6 + - - +
1361B SER* 4.2 5.3 - - - +
1363B PHE* 1.3 87.1 - - - +
1365B LYS* 1.3 56.9 + - - +
1367B LYS* 3.5 11.8 + - - +
1368B ALA* 3.0 28.8 + - - +
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Residues in contact with LYS1365 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1361B SER 3.0 19.5 + - - +
1362B ARG* 3.7 9.0 - - - +
1364B ASP* 1.3 78.0 - - - +
1366B GLU* 1.3 58.6 + - - +
1368B ALA* 3.2 6.1 + - + +
1369B GLU* 2.9 62.1 + - + +
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Residues in contact with GLU1366 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1362B ARG 3.1 15.4 + - - +
1363B PHE* 3.2 5.5 + - - +
1365B LYS* 1.3 74.6 - - - +
1367B LYS* 1.3 61.6 + - - +
1369B GLU* 3.3 14.9 + - - +
1370B LYS* 3.0 49.0 + - + +
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Residues in contact with LYS1367 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1363B PHE* 3.2 34.6 + - + +
1364B ASP* 3.7 12.8 - - - +
1366B GLU* 1.3 79.6 - - - +
1368B ALA* 1.3 61.7 + - - +
1370B LYS* 3.7 5.9 + - - +
1371B ARG* 3.3 21.8 + - - +
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Residues in contact with ALA1368 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1364B ASP 3.0 17.7 + - - +
1365B LYS* 3.7 6.1 - - - +
1367B LYS* 1.3 76.7 - - - +
1369B GLU* 1.3 59.4 + - - +
1371B ARG* 3.7 4.9 - - - +
1372B LEU* 2.8 30.4 + - - +
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Residues in contact with GLU1369 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1365B LYS* 2.9 48.0 + - + +
1366B GLU* 3.3 18.1 + - - +
1368B ALA* 1.3 73.3 - - - +
1370B LYS* 1.3 61.5 + - + +
1372B LEU* 3.2 12.3 + - + +
1373B HIS* 2.8 31.1 + - - +
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Residues in contact with LYS1370 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1366B GLU* 3.0 40.5 + - + +
1367B LYS* 4.0 7.0 - - - +
1368B ALA 3.3 0.2 - - - -
1369B GLU* 1.3 75.5 - - + +
1371B ARG* 1.3 63.1 + - - +
1373B HIS* 3.2 9.8 + - - +
1374B ILE* 3.1 24.8 + - - +
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Residues in contact with ARG1371 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1367B LYS 3.3 15.3 + - - +
1368B ALA* 3.7 6.5 - - - +
1369B GLU 3.2 0.4 - - - -
1370B LYS* 1.3 76.4 - - - +
1372B LEU* 1.3 67.5 + - - +
1374B ILE* 2.9 31.7 + - - +
1375B VAL* 2.8 47.7 + - + +
1378B LEU* 4.7 11.3 - - - +
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Residues in contact with LEU1372 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1368B ALA 2.8 19.1 + - - +
1369B GLU* 3.4 11.9 - - + +
1371B ARG* 1.3 77.0 - - - +
1373B HIS* 1.3 57.0 + - - +
1375B VAL* 3.1 11.7 + - + -
1376B GLU* 2.8 56.2 + - + +
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Residues in contact with HIS1373 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1369B GLU 2.8 12.9 + - - +
1370B LYS* 3.3 13.5 - - - +
1371B ARG 3.1 0.2 - - - -
1372B LEU* 1.3 77.8 - - - +
1374B ILE* 1.3 62.3 + - + +
1376B GLU* 3.4 16.0 + - - +
1377B GLY 3.1 5.4 + - - -
1412B THR* 3.0 34.5 + - + +
1414B GLU* 3.6 26.5 + - + +
1415B GLN* 2.8 52.4 + - + -
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Residues in contact with ILE1374 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1370B LYS 3.1 14.8 + - - +
1371B ARG* 2.9 31.7 + - - +
1373B HIS* 1.3 76.7 - - + +
1375B VAL* 1.3 60.0 - - - +
1377B GLY* 2.9 4.7 + - - -
1378B LEU* 2.8 39.9 + - + +
1414B GLU* 3.5 35.9 - - + +
1415B GLN* 4.2 6.7 - - + +
1418B ALA* 3.5 24.0 - - + -
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Residues in contact with VAL1375 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1371B ARG* 2.8 54.3 + - + +
1372B LEU* 3.6 16.6 - - + +
1374B ILE* 1.3 73.4 - - - +
1376B GLU* 1.3 67.7 + - + +
1378B LEU* 3.2 10.0 + - + +
1379B ILE* 3.0 44.6 + - + +
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Residues in contact with GLU1376 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1372B LEU* 2.8 46.4 + - + +
1373B HIS* 3.6 24.7 + - - +
1375B VAL* 1.3 78.0 - - + +
1377B GLY* 1.3 62.5 + - - +
1379B ILE* 3.4 10.0 + - + +
1380B ARG* 3.4 22.2 + - - +
1415B GLN* 4.3 4.3 - - - +
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Residues in contact with GLY1377 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1373B HIS 3.1 6.5 + - - -
1374B ILE 2.9 8.6 + - - -
1376B GLU* 1.3 77.6 - - - +
1378B LEU* 1.3 62.9 + - - +
1380B ARG* 3.2 4.1 + - - -
1381B VAL* 3.0 20.7 + - - +
1411B PHE* 3.5 21.0 - - - -
1415B GLN* 3.4 25.5 - - - +
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Residues in contact with LEU1378 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1371B ARG* 4.7 14.6 - - - +
1374B ILE* 2.8 38.1 + - + +
1375B VAL* 3.2 11.4 + - + +
1377B GLY* 1.3 73.1 - - - +
1379B ILE* 1.3 62.8 + - + +
1381B VAL* 3.2 14.4 + - + +
1382B ILE* 3.0 32.3 + - + +
1418B ALA* 5.5 3.8 - - + +
1419B ILE* 5.1 16.4 - - - +
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Residues in contact with ILE1379 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1375B VAL* 3.0 33.5 + - + +
1376B GLU* 3.6 9.2 - - + +
1378B LEU* 1.3 78.7 - - + +
1380B ARG* 1.3 62.5 + - + +
1382B ILE* 3.6 16.7 + - - +
1383B SER* 3.9 6.6 + - - -
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Residues in contact with ARG1380 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1376B GLU 3.4 9.3 + - - +
1377B GLY* 3.2 10.7 + - - +
1379B ILE* 1.3 75.2 - - + +
1381B VAL* 1.3 68.4 + - - +
1383B SER* 3.0 23.7 + - - -
1384B ILE* 3.4 13.9 + - + +
1409B TYR* 2.5 44.0 + - - +
1410B ASP* 3.5 18.8 + - - +
1411B PHE* 3.7 27.7 - - + +
1415B GLN* 5.3 0.8 + - - -
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Residues in contact with VAL1381 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1377B GLY 3.0 18.5 + - - +
1378B LEU* 3.2 20.6 + - + +
1380B ARG* 1.3 75.2 - - - +
1382B ILE* 1.3 69.7 + - + +
1384B ILE* 2.8 23.6 + - - -
1385B LEU* 2.8 34.1 + - + -
1388B VAL* 4.9 15.9 - - + -
1405B LEU* 6.3 1.8 - - + -
1411B PHE* 3.7 20.6 - - + -
1419B ILE* 5.6 9.6 - - - -
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Residues in contact with ILE1382 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1378B LEU* 3.0 23.1 + - + +
1379B ILE* 3.7 11.7 - - - +
1380B ARG 3.1 0.4 - - - -
1381B VAL* 1.3 83.3 - - + +
1383B SER* 1.3 61.6 + - - +
1384B ILE 3.4 0.2 + - - -
1385B LEU* 3.6 21.7 + - + +
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Residues in contact with SER1383 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1379B ILE 3.9 6.0 + - - -
1380B ARG* 3.0 15.8 + - - -
1382B ILE* 1.3 82.0 - - - +
1384B ILE* 1.3 68.0 + - - +
1385B LEU 3.6 0.6 + - - -
1387B GLU* 4.7 1.9 - - - +
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Residues in contact with ILE1384 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1380B ARG* 3.4 20.2 - - + +
1381B VAL* 2.8 7.6 + - - +
1383B SER* 1.3 91.9 - - - +
1385B LEU* 1.3 64.0 + - - +
1386B ASP 3.1 3.3 + - - -
1387B GLU* 3.2 23.4 - - + +
1388B VAL* 3.0 36.1 + - + +
1409B TYR* 3.4 41.7 - - + -
1411B PHE* 4.3 12.3 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il