Contacts of the strand formed by residues 210 - 221 (chain C) in PDB entry 4ZIN
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ILE 210 (chain C).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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45C LYS* 6.0 3.4 - - + -
46C LEU 3.4 10.5 - - - +
47C LYS* 4.4 31.4 - - + +
204C HIS* 3.1 6.6 - - - +
205C ASN* 3.0 53.6 + - + +
209C THR* 1.3 83.0 - - - +
211C VAL* 1.3 67.3 + - - +
212C GLU* 5.6 7.0 - - + +
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Residues in contact with VAL 211 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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45C LYS* 3.6 1.9 - - - -
46C LEU* 2.7 36.3 + - - +
58C TRP* 3.6 46.0 - - + +
201C ILE* 4.0 14.1 - - + -
203C SER 3.5 9.6 - - - +
204C HIS* 4.2 0.7 - - + -
208C TYR* 3.6 40.8 - - + +
209C THR 5.0 0.4 - - - -
210C ILE* 1.3 82.3 - - - +
212C GLU* 1.3 74.1 + - - +
213C GLN* 4.4 2.7 - - + -
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Residues in contact with GLU 212 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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44C ALA 3.3 5.6 - - - +
45C LYS* 3.6 42.7 + - + +
201C ILE* 3.5 6.9 - - - +
202C THR* 2.8 39.5 + - - +
203C SER* 2.7 37.9 + - - +
210C ILE* 5.6 6.4 - - + +
211C VAL* 1.3 74.8 - - - +
213C GLN* 1.3 59.0 + - - +
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Residues in contact with GLN 213 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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43C THR* 3.3 7.0 - - - +
44C ALA 2.9 29.1 + - - +
46C LEU* 3.6 22.9 - - + +
58C TRP* 2.8 31.7 + - - -
62C SER* 3.0 38.4 + - - -
65C PHE* 4.3 4.0 - - - -
66C CH6 3.6 29.9 - - + +
199C LEU* 4.2 7.2 - - + +
200C ASP 3.2 10.8 - - - +
201C ILE* 3.7 7.0 - - + +
202C THR* 4.2 4.6 + - - -
211C VAL* 4.4 1.8 - - + -
212C GLU* 1.3 78.1 - - - +
214C TYR* 1.3 61.0 + - - +
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Residues in contact with TYR 214 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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41C THR* 3.4 21.0 - - + +
42C GLN 3.4 18.6 - - - -
43C THR* 3.6 17.3 - - + -
66C CH6 4.5 1.3 - - - -
198C LYS 4.9 1.6 - - - -
199C LEU* 3.4 3.3 - - - +
200C ASP* 2.8 51.1 + - + +
202C THR* 3.7 22.2 - - + -
213C GLN* 1.3 74.7 - - - +
215C GLU* 1.3 73.9 + - - +
216C ARG* 2.9 44.0 + - + +
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Residues in contact with GLU 215 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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40C GLY 3.6 0.6 - - - +
41C THR* 3.4 3.8 - - - -
42C GLN* 2.9 49.6 + - + +
66C CH6 2.6 74.0 + - + +
69C SER 5.3 1.6 - - - +
70C LYS* 5.6 2.4 + - - +
73C VAL* 5.9 0.5 - - - +
197C ILE* 3.7 24.4 - - + +
198C LYS 3.4 11.4 - - - +
199C LEU* 4.1 4.1 - - + +
214C TYR* 1.3 80.5 - - - +
216C ARG* 1.3 64.1 + - - +
217C ALA* 4.0 13.2 - - - +
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Residues in contact with ARG 216 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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39C GLU 5.2 2.6 + - - +
40C GLY 3.1 9.4 - - - +
41C THR* 4.0 15.4 - - + +
196C ASN 3.6 1.5 - - - +
197C ILE* 3.2 4.3 - - - +
198C LYS* 2.9 39.0 + - + +
214C TYR* 2.9 42.0 + - + +
215C GLU* 1.3 76.5 - - - +
217C ALA* 1.3 67.2 + - - +
218C GLU* 5.3 8.5 - - + +
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Residues in contact with ALA 217 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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40C GLY* 2.8 16.9 + - - -
72C TYR 4.2 6.3 - - - +
73C VAL* 4.0 27.1 - - + -
74C LYS* 3.3 17.0 + - - +
195C VAL* 4.2 0.7 - - + -
196C ASN 3.2 5.8 - - - -
197C ILE* 4.0 18.2 - - + -
215C GLU* 4.0 12.5 - - - +
216C ARG* 1.3 79.2 - - - +
218C GLU* 1.3 62.5 + - - +
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Residues in contact with GLU 218 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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73C VAL* 4.2 0.2 - - - -
74C LYS* 3.6 43.1 + - + +
195C VAL* 3.4 4.1 - - - +
196C ASN* 2.9 39.3 + - + +
216C ARG* 5.6 9.5 - - + -
217C ALA* 1.3 75.3 - - - +
219C GLY* 1.3 71.4 + - - +
220C ARG* 3.8 27.0 + - + +
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Residues in contact with GLY 219 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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73C VAL* 3.7 6.2 - - - +
74C LYS 2.7 18.4 + - - +
75C HIS* 4.9 1.6 - - - -
76C PRO* 3.4 25.2 - - - +
193C TYR* 4.2 10.8 - - - -
194C ASN 3.3 9.0 - - - -
195C VAL* 4.2 10.1 - - - -
218C GLU* 1.3 79.1 - - - +
220C ARG* 1.3 65.4 + - - +
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Residues in contact with ARG 220 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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76C PRO* 4.9 2.0 - - - -
79C ILE* 4.1 6.3 - - - -
193C TYR* 3.5 4.8 - - - +
194C ASN* 2.7 38.2 + - + +
196C ASN* 3.6 30.9 - - - +
218C GLU* 4.0 25.0 + - - +
219C GLY* 1.3 81.7 - - - +
221C HIS* 1.3 71.3 + - - +
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Residues in contact with HIS 221 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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76C PRO* 4.1 11.5 - - + +
78C ASP* 3.1 35.7 + - - -
79C ILE* 3.5 31.7 - - + +
193C TYR* 4.7 1.3 - - - +
194C ASN* 3.8 5.7 + - - -
220C ARG* 1.3 79.7 + - - +
222C SER* 1.3 60.6 + - - +
223C THR* 3.5 20.2 + - - +
224C GLY 5.2 5.2 - - - +
301C SO4 4.3 12.4 + - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
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Atomic class I II III IV V VI VII VIII
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I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il