Contacts of the helix formed by residues 33 - 65 (chain A) in PDB entry 4ZWJ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 33 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32A ALA* 1.3 76.6 - - - +
34A PRO* 1.3 79.4 - - - +
35A TRP* 3.3 37.9 + - + +
36A GLN* 3.1 24.2 + - + +
37A PHE* 3.5 6.8 - - - -
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Residues in contact with PRO 34 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29A TYR* 3.9 39.6 - - + +
32A ALA 3.6 3.8 - - - +
33A GLU* 1.3 96.3 - - + +
35A TRP* 1.3 62.5 + - + +
37A PHE* 3.1 16.3 + - + +
38A SER* 3.3 12.7 + - - -
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Residues in contact with TRP 35 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33A GLU* 3.3 39.7 + - + +
34A PRO* 1.3 79.3 - - + +
36A GLN* 1.3 87.0 + - + +
38A SER* 3.3 12.1 + - - -
39A MET* 2.9 59.9 + - + +
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Residues in contact with GLN 36 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32A ALA* 3.4 16.9 - - + +
33A GLU* 3.1 18.3 + - + +
35A TRP* 1.3 112.5 - - + +
37A PHE* 1.3 62.3 + - + +
39A MET* 3.4 10.4 - - + +
40A LEU* 3.1 24.4 + - - +
183A LEU* 4.8 12.0 - - + +
286A ILE* 3.3 37.1 - - - +
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Residues in contact with PHE 37 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28A GLN* 3.2 31.4 - - + -
29A TYR* 4.0 25.1 - + + +
31A LEU* 5.1 0.2 - - + -
32A ALA* 3.8 24.2 - - + -
33A GLU 3.5 12.8 - - - -
34A PRO* 3.1 9.5 + - + +
36A GLN* 1.3 75.6 - - + +
38A SER* 1.3 60.8 + - - +
40A LEU* 3.3 8.0 + - + +
41A ALA* 3.0 22.5 + - - +
98A SER* 3.6 21.1 - - - +
101A GLY* 3.6 32.1 - - - -
183A LEU* 4.2 25.6 - - + -
185A CYS* 3.6 24.0 - - - -
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Residues in contact with SER 38 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34A PRO 3.3 9.1 + - - -
35A TRP* 3.3 14.6 + - - -
37A PHE* 1.3 77.8 - - - +
39A MET* 1.3 58.5 + - - +
41A ALA* 3.3 8.7 + - - +
42A ALA* 2.9 28.8 + - - +
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Residues in contact with MET 39 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35A TRP* 2.9 48.2 + - + +
36A GLN* 3.4 11.7 - - + +
38A SER* 1.3 76.7 - - - +
40A LEU* 1.3 57.7 + - - +
42A ALA* 3.3 8.2 + - - +
43A TYR* 2.8 30.7 + - - +
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Residues in contact with LEU 40 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36A GLN 3.1 13.8 + - - +
37A PHE* 3.5 10.8 - - + +
38A SER 3.3 0.2 - - - -
39A MET* 1.3 75.7 - - - +
41A ALA* 1.3 57.5 + - - +
43A TYR* 3.7 10.8 - - + +
44A MET* 2.9 61.7 + - + +
94A THR* 4.6 4.9 - - + -
98A SER* 3.7 21.8 - - - -
183A LEU* 4.3 19.1 - - + -
185A CYS* 3.8 28.0 - - + -
186A SER* 5.4 1.3 - - - +
289A THR* 5.4 11.4 - - + -
296A LYS* 5.8 1.1 - - - +
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Residues in contact with ALA 41 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37A PHE 3.0 13.1 + - - +
38A SER* 3.5 11.2 - - - +
39A MET 3.3 0.2 - - - -
40A LEU* 1.3 77.2 - - - +
42A ALA* 1.3 57.4 + - - +
45A PHE* 3.0 25.3 + - - +
95A LEU* 3.2 16.7 - - + +
98A SER* 3.4 20.5 + - - +
99A LEU* 3.8 28.5 - - + +
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Residues in contact with ALA 42 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38A SER 2.9 18.0 + - - +
39A MET* 3.6 9.6 - - - +
41A ALA* 1.3 75.6 - - - +
43A TYR* 1.3 59.7 + - - +
45A PHE* 3.5 10.2 + - - +
46A LEU* 3.1 25.8 + - - +
----------------------------------------------------------
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Residues in contact with TYR 43 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39A MET 2.8 17.5 + - - +
40A LEU* 3.7 12.1 - - + +
42A ALA* 1.3 74.9 - - - +
44A MET* 1.3 77.8 + - + +
46A LEU* 3.1 20.4 + - + +
47A LEU* 3.1 55.3 + - + +
293A PHE* 2.9 48.1 + + + -
296A LYS* 4.8 3.8 - - + -
297A SER* 2.7 32.2 + - - -
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Residues in contact with MET 44 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40A LEU* 2.9 35.9 + - + +
41A ALA 4.1 1.3 - - - +
43A TYR* 1.3 83.6 - - + +
45A PHE* 1.3 63.6 + - - +
47A LEU* 3.4 6.8 + - - +
48A ILE* 3.1 31.7 + - - +
91A PHE* 3.7 38.5 - - + +
94A THR* 3.7 39.7 - - + +
95A LEU* 4.0 14.8 - - + +
296A LYS* 3.8 32.5 - - + +
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Residues in contact with PHE 45 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41A ALA 3.0 20.1 + - - +
42A ALA* 3.6 10.5 - - - +
43A TYR 3.2 0.2 - - - -
44A MET* 1.3 77.6 - - - +
46A LEU* 1.3 65.6 + - + +
48A ILE* 3.3 11.2 + - + +
49A VAL* 3.0 53.6 + - + +
95A LEU* 4.3 14.0 - - + +
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Residues in contact with LEU 46 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42A ALA 3.1 14.1 + - - +
43A TYR* 3.4 24.0 - - + +
45A PHE* 1.3 83.1 - - + +
47A LEU* 1.3 60.5 + - + +
49A VAL* 3.9 6.2 - - + +
50A LEU* 3.0 56.6 + - + +
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Residues in contact with LEU 47 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43A TYR* 3.1 54.6 + - + +
44A MET* 3.7 12.8 - - - +
45A PHE 3.3 0.2 - - - -
46A LEU* 1.3 81.8 - - + +
48A ILE* 1.3 59.3 + - - +
50A LEU* 6.0 0.2 - - + -
51A GLY* 2.8 28.2 + - - -
87A VAL* 4.5 3.8 - - - +
91A PHE* 3.9 45.0 - - + -
296A LYS* 4.0 15.0 - - + +
297A SER* 4.6 2.5 - - - +
300A ILE* 3.5 30.2 - - + +
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Residues in contact with ILE 48 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44A MET 3.1 18.8 + - - +
45A PHE* 3.3 7.4 + - + +
47A LEU* 1.3 75.7 - - - +
49A VAL* 1.3 66.9 + - + +
52A PHE* 3.2 28.4 + - + +
53A PRO* 3.6 0.9 - - - +
87A VAL* 4.4 17.0 - - + -
91A PHE* 4.1 13.9 - - + +
92A THR* 3.7 37.0 - - + +
95A LEU* 3.7 28.3 - - + -
----------------------------------------------------------
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Residues in contact with VAL 49 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45A PHE* 3.0 50.9 + - + +
46A LEU* 4.0 8.1 - - + +
48A ILE* 1.3 78.1 - - + +
50A LEU* 1.3 66.4 + - + +
53A PRO* 3.1 25.1 - - - +
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Residues in contact with LEU 50 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46A LEU* 3.0 47.3 + - + +
47A LEU* 6.0 0.7 - - + -
49A VAL* 1.3 85.8 - - + +
51A GLY* 1.3 62.5 + - - +
52A PHE 3.6 0.2 - - - -
53A PRO* 3.7 1.4 - - - +
54A ILE* 3.2 36.1 + - + +
300A ILE* 3.8 31.2 - - + -
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Residues in contact with GLY 51 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47A LEU 2.8 23.1 + - - -
50A LEU* 1.3 74.9 - - - +
52A PHE* 1.3 63.5 + - - +
54A ILE* 4.1 1.3 - - - +
55A ASN* 2.8 39.1 + - - -
87A VAL* 4.1 10.1 - - - -
299A ALA 5.3 1.1 - - - -
300A ILE* 3.3 14.8 - - - +
----------------------------------------------------------
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Residues in contact with PHE 52 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48A ILE* 3.2 18.1 + - + +
51A GLY* 1.3 75.8 - - - +
53A PRO* 1.4 71.2 - - + +
56A PHE* 2.9 64.1 + + + +
84A LEU* 3.9 22.1 - - + +
87A VAL* 4.1 23.7 - - + +
88A LEU* 4.7 21.5 - - + -
----------------------------------------------------------
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Residues in contact with PRO 53 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48A ILE 3.6 2.9 - - - +
49A VAL* 3.1 28.7 - - - +
50A LEU 3.7 3.6 - - - +
52A PHE* 1.4 103.7 - - + +
54A ILE* 1.3 58.7 + - + +
56A PHE* 4.5 4.7 - - + -
57A LEU* 2.8 36.6 + - - +
----------------------------------------------------------
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Residues in contact with ILE 54 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50A LEU* 3.2 29.9 + - + +
51A GLY* 4.1 3.4 - - - +
52A PHE 3.4 0.4 - - - -
53A PRO* 1.3 77.8 - - + +
55A ASN* 1.3 54.8 + - - +
57A LEU* 3.8 7.0 - - - +
58A THR* 2.6 38.1 + - - +
300A ILE* 4.8 17.3 - - + +
303A PRO* 3.5 29.2 - - + +
304A VAL* 4.8 13.9 - - + -
307A ILE* 5.9 0.7 - - + -
308A MET* 4.5 30.1 - - + -
317A MET* 4.4 2.6 - - + +
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Residues in contact with ASN 55 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51A GLY* 2.8 29.6 + - - +
53A PRO 3.4 0.4 - - - -
54A ILE* 1.3 74.5 - - - +
56A PHE* 1.3 65.6 + - - +
58A THR* 3.4 9.7 + - - -
59A LEU* 3.3 26.0 + - - +
80A ALA* 3.7 24.8 - - - +
83A ASP* 3.3 36.9 + - - +
84A LEU* 3.7 12.3 - - + -
87A VAL* 4.9 1.0 - - - +
299A ALA 4.2 7.1 + - - -
303A PRO* 3.3 25.5 - - - +
307A ILE* 5.9 1.0 - - - +
----------------------------------------------------------
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Residues in contact with PHE 56 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52A PHE* 2.9 53.6 + + + +
53A PRO* 4.0 3.6 - - + +
55A ASN* 1.3 75.3 - - - +
57A LEU* 1.3 63.6 + - + +
59A LEU* 3.3 8.4 + - + +
60A TYR* 2.8 53.7 + + + +
84A LEU* 4.0 12.2 - - + +
----------------------------------------------------------
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Residues in contact with LEU 57 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53A PRO 2.8 21.2 + - - +
54A ILE* 3.8 6.5 - - - +
56A PHE* 1.3 76.8 - - + +
58A THR* 1.3 61.1 + - - +
60A TYR* 4.1 10.8 - - + -
61A VAL* 2.8 58.5 + - + +
308A MET* 6.0 2.0 - - - -
317A MET* 4.3 16.4 - - + -
320A THR* 4.1 16.2 - - + -
321A ILE* 3.9 33.4 - - + -
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Residues in contact with THR 58 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54A ILE* 2.6 25.8 + - - +
55A ASN* 3.4 12.4 + - - -
56A PHE 3.3 0.2 - - - -
57A LEU* 1.3 76.4 - - - +
59A LEU* 1.3 55.3 + - - +
61A VAL* 4.1 2.2 - - - +
62A THR* 2.6 33.7 + - - -
76A LEU 5.1 1.8 - - - +
77A LEU* 4.6 7.2 - - + -
80A ALA* 4.1 18.3 - - + +
303A PRO* 5.8 0.2 - - - +
307A ILE* 3.7 32.9 - - + +
313A PHE* 4.0 15.6 - - + -
317A MET* 3.3 17.8 - - - +
----------------------------------------------------------
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Residues in contact with LEU 59 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55A ASN 3.3 9.2 + - - +
56A PHE* 3.3 9.2 + - + +
57A LEU 3.2 0.4 - - - -
58A THR* 1.3 76.3 - - - +
60A TYR* 1.3 64.3 + - - +
62A THR* 3.2 5.8 + - - -
63A VAL* 3.0 29.9 + - + +
77A LEU* 3.7 41.5 - - + +
80A ALA* 4.1 5.8 - - + -
81A VAL* 4.0 18.8 - - + +
84A LEU* 3.4 31.6 - - + -
----------------------------------------------------------
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Residues in contact with TYR 60 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56A PHE* 2.8 49.1 + + + +
57A LEU* 3.3 13.0 + - + +
59A LEU* 1.3 73.0 - - - +
61A VAL* 1.3 63.5 + - - +
63A VAL* 3.2 11.2 + - + +
64A GLN* 3.2 53.9 + - + +
320A THR* 4.4 22.4 - - + -
----------------------------------------------------------
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Residues in contact with VAL 61 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57A LEU* 2.8 48.3 + - + +
58A THR* 4.1 3.6 - - - +
60A TYR* 1.3 73.9 - - - +
62A THR* 1.3 58.1 + - - +
64A GLN* 3.3 4.7 + - - +
65A HIS* 3.0 32.0 + - + +
68A LEU* 3.6 20.2 - - + -
313A PHE* 5.8 1.8 - - + -
316A CYS* 4.0 18.4 - - + +
317A MET* 4.1 14.1 - - + +
320A THR* 3.4 31.4 - - + +
----------------------------------------------------------
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Residues in contact with THR 62 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58A THR 2.6 22.5 + - - -
59A LEU 3.2 6.6 + - - -
61A VAL* 1.3 76.4 - - - +
63A VAL* 1.3 62.3 + - + +
65A HIS 2.9 20.1 - - - +
68A LEU* 4.0 19.3 - - + +
69A ARG* 3.7 28.9 - - + +
77A LEU* 3.3 38.2 - - + +
313A PHE* 4.1 12.2 - - + -
----------------------------------------------------------
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Residues in contact with VAL 63 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59A LEU* 3.0 21.8 + - + +
60A TYR* 3.2 12.5 + - + +
62A THR* 1.3 77.4 - - + +
64A GLN* 1.3 73.2 + - - +
65A HIS 4.7 0.5 - - - +
69A ARG* 5.2 10.7 + - - +
----------------------------------------------------------
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Residues in contact with GLN 64 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60A TYR* 3.2 49.1 + - + +
61A VAL* 3.7 7.4 - - - +
63A VAL* 1.3 88.8 - - - +
65A HIS* 1.3 72.7 + - + +
66A LYS 3.6 2.1 + - - -
320A THR* 5.6 3.8 - - + +
----------------------------------------------------------
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Residues in contact with HIS 65 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61A VAL* 3.0 30.3 + - + +
62A THR* 2.9 22.7 - - - +
63A VAL 4.9 0.4 - - - -
64A GLN* 1.3 88.3 - - + +
66A LYS* 1.3 62.3 + - - +
67A LYS* 3.6 28.6 + - + +
68A LEU* 4.0 18.8 + - + -
69A ARG* 4.0 4.0 - - - +
316A CYS* 4.2 16.9 + - - -
319A THR* 4.2 26.0 - - + +
320A THR* 4.0 13.0 + - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il