Contacts of the helix formed by residues 85 - 114 (chain A) in PDB entry 5B31


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with GLN 85 (chain A).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     84A  PHE*     1.3    76.5    -      -       -      +
     86A  SER*     1.3    61.3    +      -       -      +
     87A  SER*     3.6    18.2    +      -       -      +
     88A  ALA*     2.9    19.3    +      -       -      +
     89A  VAL      3.3     8.7    +      -       -      -
     80B  THR*     3.9    11.7    -      -       +      +
     81B  VAL      3.0    18.1    +      -       -      +
     82B  THR*     3.3    23.4    -      -       -      +
     83B  ALA*     3.1    21.0    +      -       -      +
     84B  MET      4.9     0.2    +      -       -      -
     49I    C      3.4    30.2    +      -       -      +
    249J    G      5.5     4.8    +      -       -      -
----------------------------------------------------------
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Residues in contact with SER 86 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     68A  GLN*     5.4     3.6    -      -       -      -
     84A  PHE      3.4     4.3    +      -       -      -
     85A  GLN*     1.3    73.0    -      -       -      +
     87A  SER*     1.3    63.7    +      -       -      +
     89A  VAL*     3.4    11.1    +      -       -      +
     90A  MET*     3.1    29.8    +      -       -      +
     49I    C      3.5    14.9    +      -       -      -
     50I    C      6.2     0.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with SER 87 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     85A  GLN*     3.6    14.9    +      -       -      +
     86A  SER*     1.3    83.2    +      -       -      +
     88A  ALA*     1.3    56.3    +      -       -      +
     90A  MET*     3.7     7.3    -      -       -      +
     91A  ALA*     2.8    30.3    +      -       -      +
     83B  ALA*     3.4    20.4    -      -       -      +
    100B  PHE*     3.8    13.5    -      -       -      -
     49I    C      5.2     0.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 88 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     84A  PHE*     4.3     4.0    -      -       +      -
     85A  GLN      2.9    12.5    +      -       -      +
     87A  SER*     1.3    80.0    +      -       -      +
     89A  VAL*     1.3    65.3    +      -       -      +
     91A  ALA*     3.4     3.3    +      -       -      +
     92A  LEU*     3.0    29.7    +      -       -      +
     81B  VAL*     3.6    16.2    -      -       +      +
     82B  THR      3.6    10.8    -      -       -      +
     83B  ALA*     3.5    27.1    -      -       -      +
     86B  VAL*     3.8    10.5    -      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 89 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     64A  LYS      5.5     0.2    -      -       -      +
     67A  PHE*     3.9    12.0    -      -       +      -
     68A  GLN*     3.6    52.9    -      -       +      +
     71A  VAL*     4.8     6.7    -      -       +      -
     72A  ARG*     4.9     0.9    -      -       +      +
     84A  PHE*     3.8    30.9    -      -       +      +
     85A  GLN      3.3     5.5    +      -       -      +
     86A  SER*     3.7     8.3    -      -       -      +
     87A  SER      3.4     0.2    -      -       -      -
     88A  ALA*     1.3    77.2    -      -       -      +
     90A  MET*     1.3    71.0    +      -       +      +
     92A  LEU*     3.2    11.9    +      -       -      +
     93A  GLN*     3.0    25.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 90 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     60A  LEU*     4.2    16.6    -      -       -      -
     64A  LYS*     4.1    30.5    -      -       +      +
     68A  GLN*     5.9     1.6    -      -       +      +
     86A  SER*     3.1    21.4    +      -       -      +
     87A  SER*     3.8     6.5    -      -       -      +
     89A  VAL*     1.3    89.6    -      -       +      +
     91A  ALA*     1.3    63.6    +      -       -      +
     93A  GLN*     3.1    25.4    +      -       -      +
     94A  GLU*     3.0    29.7    +      -       +      +
    100B  PHE*     4.0    15.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 91 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     87A  SER      2.8    21.6    +      -       -      +
     88A  ALA*     3.7     6.3    -      -       -      +
     90A  MET*     1.3    73.4    -      -       -      +
     92A  LEU*     1.3    63.7    +      -       -      +
     94A  GLU      3.4     0.2    +      -       -      -
     95A  ALA*     3.0    21.7    +      -       -      +
     83B  ALA*     4.9     3.8    -      -       +      +
     86B  VAL*     3.9    17.5    -      -       +      -
     87B  VAL*     5.1     0.7    -      -       +      -
     97B  LEU*     3.4    28.6    -      -       +      +
    100B  PHE*     3.7    22.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 92 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     67A  PHE*     4.0    11.4    -      -       +      -
     71A  VAL*     3.9    29.8    -      -       +      -
     84A  PHE*     4.3     9.2    -      -       +      -
     88A  ALA      3.0    19.0    +      -       -      +
     89A  VAL*     3.4     8.3    -      -       -      +
     90A  MET      3.2     0.2    -      -       -      -
     91A  ALA*     1.3    77.7    -      -       -      +
     93A  GLN*     1.3    57.0    +      -       -      +
     95A  ALA*     3.2     3.9    +      -       -      +
     96A  CYS*     2.9    32.6    +      -       -      +
     61B  PHE*     5.1     2.0    -      -       +      -
     62B  LEU*     4.2    16.2    -      -       +      -
     65B  VAL*     3.6    33.7    -      -       +      -
     66B  ILE*     4.2    14.1    -      -       +      -
     86B  VAL*     3.9    19.5    -      -       +      +
     90B  LEU*     5.6     0.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 93 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     60A  LEU*     3.8    21.9    -      -       +      +
     62A  ILE*     2.8    35.4    +      -       -      +
     63A  ARG      4.3     4.4    -      -       -      -
     64A  LYS*     3.8    20.0    -      -       -      +
     67A  PHE*     3.4    42.4    -      -       +      -
     89A  VAL      3.0    12.6    +      -       -      +
     90A  MET*     3.1    14.7    +      -       -      +
     92A  LEU*     1.3    76.5    -      -       -      +
     94A  GLU*     1.3    57.5    +      -       -      +
     96A  CYS*     3.7     0.2    -      -       -      +
     97A  GLU*     2.8    49.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 94 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     58A  THR      5.6     0.9    -      -       -      +
     60A  LEU*     3.6    32.8    -      -       +      +
     90A  MET*     3.0    22.2    +      -       +      +
     91A  ALA      3.8     4.0    -      -       -      +
     93A  GLN*     1.3    77.2    -      -       -      +
     95A  ALA*     1.3    62.8    +      -       -      +
     97A  GLU*     3.3     1.0    +      -       -      +
     98A  ALA*     2.9    28.3    +      -       -      +
     97B  LEU*     4.3    16.2    -      -       +      -
    100B  PHE*     4.0    17.4    -      -       +      -
    103G  THR*     4.7     1.6    -      -       +      +
    105G  ALA*     3.7     6.9    -      -       -      +
    106G  GLY*     3.2    31.9    +      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 95 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     91A  ALA      3.0    12.4    +      -       -      +
     92A  LEU*     3.8     4.0    -      -       -      +
     94A  GLU*     1.3    77.0    -      -       -      +
     96A  CYS*     1.3    58.1    +      -       -      +
     98A  ALA*     4.0     4.6    -      -       -      +
     99A  TYR*     3.0    28.9    +      -       -      +
     61B  PHE*     3.8     7.2    -      -       +      -
     90B  LEU*     3.5    46.0    -      -       +      -
     95B  ARG*     4.6     7.9    +      -       +      +
     97B  LEU*     4.5    10.5    -      -       +      +
    103G  THR*     5.1     2.9    -      -       -      -
----------------------------------------------------------
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Residues in contact with CYS 96 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     62A  ILE*     5.4     2.2    -      -       -      -
     67A  PHE*     4.1    14.6    -      -       +      -
     92A  LEU      2.9    19.0    +      -       -      +
     93A  GLN*     3.7     5.8    -      -       -      +
     95A  ALA*     1.3    77.2    -      -       -      +
     97A  GLU*     1.3    61.4    +      -       +      +
     99A  TYR*     3.5     2.3    +      -       -      +
    100A  LEU*     3.0    38.3    +      -       -      +
     58B  LEU*     3.1    35.9    -      -       -      -
     61B  PHE*     3.8    26.2    -      -       +      -
     62B  LEU*     4.2     5.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 97 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     59A  GLU      4.5     0.2    -      -       -      +
     60A  LEU*     3.2    19.4    -      -       +      +
     61A  LEU*     2.5    33.1    +      -       -      +
     62A  ILE*     3.0    38.6    +      -       +      +
     93A  GLN*     2.8    41.6    +      -       +      +
     94A  GLU      4.1     1.8    -      -       -      +
     96A  CYS*     1.3    70.9    -      -       -      +
     98A  ALA*     1.3    65.9    +      -       -      +
    100A  LEU*     3.2     3.0    +      -       -      +
    101A  VAL*     2.9    32.0    +      -       +      +
     37B  LEU*     3.7    19.5    -      -       +      +
     40B  ARG*     4.8     3.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 98 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     94A  GLU      2.9    17.4    +      -       -      +
     95A  ALA      4.0     2.9    -      -       -      +
     97A  GLU*     1.3    77.7    -      -       -      +
     99A  TYR*     1.3    57.7    +      -       -      +
    101A  VAL*     3.8     5.3    -      -       -      +
    102A  GLY*     2.8    28.1    +      -       -      -
     95B  ARG*     4.3     4.4    +      -       -      +
    103G  THR*     3.7    33.0    -      -       +      +
----------------------------------------------------------
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Residues in contact with TYR 99 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     95A  ALA      3.0    19.2    +      -       -      +
     96A  CYS*     3.6     4.5    -      -       -      +
     98A  ALA*     1.3    75.9    -      -       -      +
    100A  LEU*     1.3    74.9    +      -       +      +
    102A  GLY*     3.3     3.0    +      -       -      -
    103A  LEU*     2.8    36.4    +      -       +      +
    128A  ARG*     3.7     2.8    +      -       -      -
    131A  ARG*     3.5     9.9    +      -       -      -
    133A  GLU*     2.6    42.8    +      -       -      -
     57B  VAL*     3.6    32.5    -      -       +      +
     61B  PHE*     3.5    45.8    -      +       +      -
     95B  ARG*     3.8    29.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 100 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     62A  ILE*     4.9     2.5    -      -       +      -
     96A  CYS*     3.0    24.1    +      -       -      +
     97A  GLU      3.2     3.1    +      -       -      +
     99A  TYR*     1.3    96.0    -      -       +      +
    101A  VAL*     1.3    53.2    +      -       -      +
    103A  LEU*     3.0    10.3    +      -       +      +
    104A  PHE*     2.7    47.5    +      -       +      -
     37B  LEU*     3.7    30.5    -      -       +      -
     54B  THR*     4.3    20.6    -      -       +      -
     57B  VAL*     4.3    13.2    -      -       +      -
     58B  LEU*     4.1    37.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 101 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     61A  LEU*     5.3     0.2    -      -       +      -
     97A  GLU*     2.9    22.2    +      -       +      +
     98A  ALA*     3.8     5.8    -      -       -      +
    100A  LEU*     1.3    72.1    -      -       -      +
    102A  GLY*     1.3    65.6    +      -       -      +
    104A  PHE*     3.3     4.7    +      -       -      +
    105A  GLU*     3.0    31.1    +      -       -      +
     37B  LEU*     3.7    35.7    -      -       +      +
     40B  ARG*     3.9    19.5    -      -       +      +
     41B  GLY*     3.9    15.1    -      -       -      +
    109G  VAL*     3.7    29.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLY 102 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     98A  ALA      2.8    15.2    +      -       -      -
     99A  TYR*     3.5     4.3    -      -       -      -
    101A  VAL*     1.3    75.9    -      -       -      +
    103A  LEU*     1.3    60.1    +      -       -      +
    105A  GLU*     3.2    24.9    +      -       -      +
    106A  ASP*     3.3    12.0    +      -       -      -
    131A  ARG*     3.3    16.5    +      -       -      -
     95B  ARG*     6.3     0.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 103 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     99A  TYR*     2.8    27.4    +      -       +      +
    100A  LEU*     3.0    15.5    +      -       +      +
    102A  GLY*     1.3    69.5    -      -       -      +
    104A  PHE*     1.3    65.0    +      -       +      +
    106A  ASP*     3.3     2.0    +      -       +      -
    107A  THR*     2.8    41.7    +      -       -      +
    124A  ILE*     4.1    18.8    -      -       +      -
    127A  ALA*     4.3    13.9    -      -       +      -
    128A  ARG*     3.9    20.0    -      -       +      -
    131A  ARG*     3.4    24.4    -      -       -      +
     54B  THR*     6.5     0.7    -      -       +      -
     57B  VAL*     3.6    31.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 104 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    100A  LEU*     2.7    33.2    +      -       +      +
    101A  VAL      3.7     4.5    -      -       -      +
    103A  LEU*     1.3    76.1    -      -       +      +
    105A  GLU*     1.3    56.1    +      -       -      +
    107A  THR*     3.4     9.1    -      -       -      -
    108A  ASN*     2.8    31.9    +      -       -      +
    119A  ILE*     3.8    29.8    -      -       +      -
    124A  ILE*     4.5     8.7    -      -       +      -
     34B  ILE*     3.9    16.8    -      -       +      -
     37B  LEU*     3.8    17.0    -      -       +      -
     38B  ALA*     3.5    42.2    -      -       +      -
     41B  GLY*     4.3     7.4    -      -       -      -
     43B  VAL*     3.9     7.4    -      -       +      +
     50B  ILE*     4.1     6.3    -      -       +      -
     54B  THR*     3.5    33.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 105 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     55A  GLN*     5.7     1.0    +      -       -      +
    101A  VAL*     3.0    33.7    +      -       -      +
    102A  GLY*     3.2    15.7    +      -       -      +
    104A  PHE*     1.3    73.9    -      -       -      +
    106A  ASP*     1.3    68.1    +      -       -      +
    108A  ASN*     3.1     6.5    +      -       -      +
    109A  LEU*     3.0    27.2    +      -       +      +
     40B  ARG      4.5     0.9    -      -       -      +
     41B  GLY*     3.6    24.3    +      -       -      +
    109G  VAL*     3.9    16.8    -      -       -      +
    114G  HIS*     5.4     1.1    +      -       -      -
----------------------------------------------------------
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Residues in contact with ASP 106 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    102A  GLY      3.3     4.3    +      -       -      +
    103A  LEU      3.9     4.3    -      -       -      +
    105A  GLU*     1.3    79.5    -      -       -      +
    107A  THR*     1.3    63.7    +      -       -      +
    109A  LEU*     3.3    20.1    +      -       -      +
    110A  CYS*     3.0    26.0    +      -       -      -
    127A  ALA*     3.8    19.1    -      -       +      -
    131A  ARG*     2.8    38.7    +      -       -      +
    129E  ARG*     4.9     2.6    -      -       -      +
    130E  ILE*     4.2    27.7    -      -       +      +
----------------------------------------------------------
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Residues in contact with THR 107 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    103A  LEU*     2.8    30.0    +      -       -      +
    104A  PHE*     3.4    10.6    -      -       -      -
    105A  GLU      3.2     0.2    -      -       -      -
    106A  ASP*     1.3    74.0    -      -       -      +
    108A  ASN*     1.3    59.5    +      -       -      +
    110A  CYS*     2.9    19.4    +      -       -      +
    111A  ALA*     2.9    11.1    +      -       -      +
    119A  ILE*     3.7    25.4    -      -       +      -
    120A  MET      4.5     0.2    -      -       -      +
    123A  ASP*     3.5    30.0    -      -       +      +
    124A  ILE*     3.4    36.0    -      -       +      +
    127A  ALA*     4.5     0.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 108 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    104A  PHE      2.8    20.3    +      -       -      +
    105A  GLU*     3.5     7.0    -      -       -      +
    107A  THR*     1.3    73.1    -      -       -      +
    109A  LEU*     1.3    57.3    +      -       -      +
    111A  ALA*     3.1     3.5    +      -       -      +
    112A  ILE*     2.8    40.6    +      -       -      +
    117A  VAL      4.6     7.8    -      -       -      +
    119A  ILE*     3.6    19.5    -      -       -      +
     41B  GLY      4.6     2.1    +      -       -      +
     42B  GLY      3.1    26.8    +      -       -      -
     43B  VAL*     3.7    16.6    -      -       +      +
     44B  LYS      4.7     0.2    +      -       -      -
    114G  HIS*     3.8    17.1    -      -       +      +
    117G  LEU*     3.4    20.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 109 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    105A  GLU*     3.0    20.2    +      -       +      +
    106A  ASP*     3.3    22.2    +      -       -      +
    108A  ASN*     1.3    75.9    -      -       -      +
    110A  CYS*     1.3    57.1    +      -       -      +
    112A  ILE*     3.5     8.0    +      -       +      +
    113A  HIS*     3.0    27.4    +      -       -      +
    126E  LEU*     3.9    21.4    -      -       +      +
    129E  ARG*     3.5    48.9    -      -       +      +
    130E  ILE*     4.8     2.9    -      -       +      -
    114G  HIS*     3.5    35.7    -      -       +      +
----------------------------------------------------------
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Residues in contact with CYS 110 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    106A  ASP      3.0    10.5    +      -       -      -
    107A  THR      2.9     9.4    +      -       -      +
    109A  LEU*     1.3    73.3    -      -       -      +
    111A  ALA*     1.3    67.2    +      -       -      +
    113A  HIS*     3.2    13.3    +      -       -      +
    114A  ALA      3.3     5.0    +      -       -      -
    123A  ASP*     3.4    29.6    -      -       -      +
    126A  LEU*     3.7    21.3    -      -       +      -
    127A  ALA      4.0     5.6    -      -       -      -
    113E  HIS*     3.0    24.2    +      -       -      +
    126E  LEU*     4.5     3.4    -      -       -      -
    130E  ILE*     3.3    32.5    -      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 111 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    107A  THR      2.9     8.3    +      -       -      +
    108A  ASN*     3.6     9.0    -      -       -      +
    110A  CYS*     1.3    76.9    -      -       -      +
    112A  ILE*     1.3    63.2    +      -       +      +
    114A  ALA*     2.9    13.9    +      -       -      -
    116A  ARG*     3.0    38.8    +      -       -      +
    118A  THR      3.8    12.3    -      -       -      +
    119A  ILE*     4.1    12.1    -      -       +      -
    123A  ASP*     3.2    25.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 112 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    108A  ASN*     2.8    37.3    +      -       -      +
    109A  LEU*     3.8     9.0    -      -       +      +
    111A  ALA*     1.3    72.9    -      -       +      +
    113A  HIS*     1.3    59.5    +      -       -      +
    115A  LYS*     2.8    22.2    +      -       -      +
    116A  ARG      3.1    19.7    -      -       -      +
    117A  VAL*     4.4     2.5    -      -       +      -
    114G  HIS*     5.1    14.4    -      -       +      +
    116G  SER*     3.8    28.3    -      -       -      +
    117G  LEU*     3.9    20.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with HIS 113 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    109A  LEU      3.0    15.8    +      -       -      +
    110A  CYS      3.4    10.3    -      -       -      +
    111A  ALA      3.1     0.2    -      -       -      -
    112A  ILE*     1.3    77.8    -      -       -      +
    114A  ALA*     1.3    58.1    +      -       -      +
    115A  LYS*     3.1     9.9    +      -       -      +
    110E  CYS*     3.2    23.4    +      -       -      +
    113E  HIS*     4.6     4.7    -      +       -      -
    114E  ALA*     3.8    16.0    -      -       +      +
    116E  ARG*     3.4    10.7    +      -       -      -
    122E  LYS*     3.7    39.3    +      -       +      +
    123E  ASP*     2.5    32.6    +      -       -      -
    126E  LEU*     3.4    25.8    -      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 114 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    110A  CYS      3.3     1.0    +      -       -      -
    111A  ALA      2.9     5.5    +      -       -      +
    113A  HIS*     1.3    76.5    -      -       -      +
    115A  LYS*     1.3    72.0    +      -       -      +
    116A  ARG*     3.2    39.8    +      -       -      +
    113E  HIS*     3.7    28.5    -      -       +      +
    114E  ALA*     4.3     9.2    -      -       -      +
    115E  LYS*     5.6     8.1    -      -       -      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il