Contacts of the helix formed by residues 156 - 217 (chain A) in PDB entry 5C5B
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 156 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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154A ARG 4.0 2.0 + - - -
155A GLU* 1.3 71.8 - - - +
157A ASP* 1.3 63.9 + - - +
158A LYS* 2.9 23.2 + - - +
159A VAL* 3.2 33.1 - - + +
160A LYS* 3.0 24.0 + - - +
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Residues in contact with ASP 157 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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155A GLU* 3.8 16.1 + - - +
156A ASN* 1.3 74.4 + - - +
158A LYS* 1.3 57.1 + - - +
160A LYS* 3.8 14.9 + - - +
161A TYR* 2.9 32.7 + - - +
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Residues in contact with LYS 158 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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156A ASN* 2.9 16.1 + - - +
157A ASP* 1.3 79.5 - - - +
159A VAL* 1.3 63.1 + - - +
161A TYR* 3.6 4.2 - - - +
162A GLU* 2.9 36.7 + - - +
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Residues in contact with VAL 159 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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150A LEU* 5.0 9.0 - - + -
156A ASN* 3.2 37.2 - - + +
158A LYS* 1.3 77.9 - - - +
160A LYS* 1.3 60.7 + - + +
162A GLU* 3.4 12.7 + - + +
163A VAL* 2.9 48.1 + - + +
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Residues in contact with LYS 160 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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147A TYR* 6.1 0.2 - - - -
150A LEU* 3.9 28.5 - - + +
155A GLU* 3.8 32.5 + - + +
156A ASN 3.0 18.0 + - - +
157A ASP* 3.8 17.1 + - - +
159A VAL* 1.3 78.7 - - + +
161A TYR* 1.3 55.5 + - - +
163A VAL* 3.8 1.6 - - - +
164A THR* 2.5 43.4 + - - +
265B ASP* 5.5 0.8 + - - -
268B VAL* 5.8 6.5 - - - +
339B ARG* 3.9 27.3 - - - +
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Residues in contact with TYR 161 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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157A ASP 2.9 20.3 + - - +
158A LYS* 3.6 5.4 - - - +
160A LYS* 1.3 74.4 - - - +
162A GLU* 1.3 73.9 + - + +
164A THR* 3.2 9.2 + - + -
165A GLU* 2.9 50.9 + - + +
259B GLU* 5.6 1.7 + - - -
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Residues in contact with GLU 162 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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158A LYS* 2.9 32.0 + - - +
159A VAL* 3.6 10.9 + - + +
161A TYR* 1.3 84.3 - - + +
163A VAL* 1.3 57.9 + - + +
165A GLU* 3.9 7.9 - - - +
166A ASP* 2.9 35.0 + - - +
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Residues in contact with VAL 163 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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143A ALA 4.3 2.2 - - - +
146A ARG* 3.7 20.0 - - + +
147A TYR* 3.5 40.8 - - + +
150A LEU* 4.3 13.2 - - + -
159A VAL* 2.9 34.5 + - + +
160A LYS 3.8 3.1 - - - +
162A GLU* 1.3 76.2 - - + +
164A THR* 1.3 58.3 - - - +
166A ASP* 3.3 8.6 + - + +
167A VAL* 2.9 28.9 + - - +
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Residues in contact with THR 164 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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147A TYR* 3.7 22.8 - - + -
160A LYS* 2.5 32.0 + - - +
161A TYR* 3.2 11.8 + - + -
163A VAL* 1.3 77.6 - - - +
165A GLU* 1.3 58.4 + - + +
167A VAL* 3.2 7.3 - - - +
168A TYR* 2.9 22.2 + - - +
263B THR* 4.0 14.1 - - + -
264B PRO* 3.7 32.0 - - + +
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Residues in contact with GLU 165 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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161A TYR* 2.9 43.1 + - + +
162A GLU* 4.1 10.7 - - - +
164A THR* 1.3 74.6 - - + +
166A ASP* 1.3 66.7 + - - +
167A VAL 3.3 0.4 - - - -
168A TYR* 3.6 24.9 - - + -
169A THR* 2.9 36.6 + - - -
259B GLU* 5.4 5.4 - - - +
263B THR* 5.8 1.1 - - + -
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Residues in contact with ASP 166 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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143A ALA* 4.1 9.8 - - + +
162A GLU 2.9 20.5 + - - +
163A VAL* 3.4 9.2 - - + +
165A GLU* 1.3 81.4 - - - +
167A VAL* 1.3 63.8 + - - +
169A THR* 3.3 5.5 + - - -
170A SER* 2.9 26.7 + - - -
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Residues in contact with VAL 167 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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140A HIS* 4.7 4.7 - - + +
143A ALA* 3.3 33.2 - - - +
144A ILE* 3.9 4.9 - - + +
147A TYR* 3.6 20.0 - - + -
163A VAL 2.9 18.0 + - - +
164A THR 3.2 8.5 - - - +
166A ASP* 1.3 75.9 - - - +
168A TYR* 1.3 58.0 + - - +
170A SER* 3.1 7.7 + - - -
171A ARG* 2.9 59.1 + - - +
264B PRO* 3.7 22.4 - - + -
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Residues in contact with TYR 168 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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164A THR 2.9 8.6 + - - +
165A GLU* 3.5 34.8 - - + +
167A VAL* 1.3 77.4 - - - +
169A THR* 1.3 77.4 + - - +
171A ARG* 3.7 1.4 - - - +
172A LYS* 2.9 56.9 + - + +
259B GLU* 3.3 39.8 - - + +
262B TYR* 3.7 29.1 - + + +
263B THR* 3.5 27.4 - - + +
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Residues in contact with THR 169 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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165A GLU* 2.9 29.6 + - - -
166A ASP* 3.3 8.6 + - - -
168A TYR* 1.3 90.7 - - - +
170A SER* 1.3 61.2 + - - +
172A LYS* 3.3 4.7 + - - +
173A LYS* 2.9 31.9 + - + +
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Residues in contact with SER 170 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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136A ALA 4.3 3.0 - - - +
139A ASP* 4.0 13.7 - - - -
140A HIS* 3.3 31.1 - - - +
143A ALA* 3.2 15.5 - - - +
166A ASP 2.9 14.8 + - - -
167A VAL 3.1 9.2 + - - -
169A THR* 1.3 80.8 - - - +
171A ARG* 1.3 59.2 + - - +
173A LYS* 3.5 6.2 + - - +
174A GLN* 2.9 30.0 + - - +
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Residues in contact with ARG 171 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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13A LEU* 5.3 10.1 - - + +
140A HIS* 3.0 39.8 + - + +
144A ILE* 4.0 9.7 - - - +
167A VAL* 2.9 35.7 + - - +
168A TYR 3.7 3.1 - - - +
170A SER* 1.3 75.1 + - - +
172A LYS* 1.3 60.1 + - - +
174A GLN* 3.2 8.0 + - - +
175A HIS* 2.9 27.9 + - - +
261B VAL 4.9 5.2 + - - -
262B TYR* 3.5 37.7 + - + +
263B THR 4.9 0.6 - - - -
264B PRO* 4.4 7.7 - - - +
299B ARG* 5.0 4.0 - - - +
358B GLU* 2.6 44.2 + - - -
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Residues in contact with LYS 172 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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168A TYR* 2.9 42.9 + - + +
169A THR* 3.6 5.2 - - - +
171A ARG* 1.3 75.4 - - - +
173A LYS* 1.3 63.1 + - - +
175A HIS* 3.1 4.5 + - - +
176A GLN* 2.9 48.5 + - - +
255B LEU 3.8 19.7 + - - -
257B VAL 5.6 4.3 - - - -
259B GLU* 6.4 1.1 - - - +
262B TYR* 3.5 41.3 + - + +
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Residues in contact with LYS 173 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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132A VAL* 4.7 12.5 + - - +
135A ILE* 5.3 10.1 - - - +
136A ALA* 4.3 17.1 - - + +
139A ASP* 5.5 4.2 + - - +
169A THR* 2.9 20.7 + - + +
170A SER* 3.9 6.1 - - - +
172A LYS* 1.3 75.4 - - - +
174A GLN* 1.3 58.1 + - - +
176A GLN* 3.3 9.7 + - + +
177A THR* 2.8 53.6 + - + +
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Residues in contact with GLN 174 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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13A LEU 5.9 0.2 + - - -
15A ASP* 3.7 19.0 + - - +
20A ARG* 3.4 16.3 + - - -
133A PHE* 4.5 4.9 - - + -
136A ALA* 4.0 8.7 - - - +
137A SER* 3.4 27.8 + - - +
140A HIS* 3.3 37.5 + - + -
170A SER 2.9 18.3 + - - +
171A ARG* 3.2 8.6 + - - +
173A LYS* 1.3 77.9 - - - +
175A HIS* 1.3 56.9 + - - +
177A THR* 3.1 6.4 + - - -
178A MET* 2.9 48.2 + - + +
314B ARG* 4.5 2.1 + - - -
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Residues in contact with HIS 175 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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9A ILE 4.8 0.4 + - - -
10A GLU 5.6 0.6 + - - -
12A THR* 2.9 34.7 + - - -
13A LEU* 3.6 39.7 + - + +
171A ARG 2.9 8.5 + - - +
172A LYS 3.4 7.6 - - - +
174A GLN* 1.3 76.8 - - - +
176A GLN* 1.3 63.0 + - + +
178A MET* 3.8 2.9 - - - +
179A MET* 2.9 41.6 + - + +
254B LEU* 3.9 17.1 - - + +
257B VAL* 6.0 0.7 - - + -
262B TYR* 2.6 41.7 + + + +
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Residues in contact with GLN 176 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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172A LYS* 2.9 53.1 + - - +
173A LYS* 3.8 8.3 + - + +
175A HIS* 1.3 77.8 - - + +
177A THR* 1.3 55.7 + - + +
179A MET* 3.1 9.5 + - + +
180A HIS* 2.3 55.9 + - + -
255B LEU* 4.8 16.2 - - + -
262B TYR* 5.5 2.0 - - - +
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Residues in contact with THR 177 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129A LEU* 4.8 2.9 - - - +
132A VAL* 3.6 26.5 - - + -
133A PHE* 3.8 22.7 - - - +
136A ALA* 3.6 11.3 - - + +
173A LYS* 2.8 41.1 + - + +
174A GLN* 3.1 10.2 + - - -
176A GLN* 1.3 74.9 - - + +
178A MET* 1.3 64.6 + - - +
180A HIS* 3.3 9.0 + - + +
181A TYR* 2.9 25.3 + - - +
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Residues in contact with MET 178 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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12A THR* 3.6 35.9 - - + +
15A ASP* 3.4 28.7 - - + +
19A THR* 5.0 5.4 - - - -
20A ARG* 4.8 2.9 - - - -
23A LEU* 5.7 0.2 - - - -
133A PHE* 3.5 37.7 - - + -
174A GLN* 2.9 33.4 + - + +
175A HIS* 3.8 3.6 - - - +
177A THR* 1.3 76.9 + - - +
179A MET* 1.3 58.1 + - - +
181A TYR* 3.4 2.7 + - - +
182A PHE* 2.9 61.9 + - + -
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Residues in contact with MET 179 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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9A ILE* 4.1 15.0 - - + +
12A THR* 3.5 26.0 - - + +
175A HIS* 2.9 42.5 + - + +
176A GLN* 3.1 10.3 + - - +
178A MET* 1.3 74.9 - - - +
180A HIS* 1.3 61.5 + - + +
182A PHE* 3.2 5.5 + - - +
183A CYS* 2.9 33.3 + - - -
251B GLN* 4.1 32.3 - - + +
254B LEU* 4.2 14.6 - - - -
255B LEU* 3.7 32.1 - - + +
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Residues in contact with HIS 180 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129A LEU* 3.4 21.6 - - + +
176A GLN* 2.3 65.3 + - + +
177A THR* 3.8 7.2 + - + +
179A MET* 1.3 75.5 - - + +
181A TYR* 1.3 57.4 + - - +
183A CYS* 3.4 2.7 + - - +
184A ALA* 2.9 31.7 + - - +
251B GLN* 3.6 32.1 + - + -
255B LEU* 6.4 1.3 - - + -
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Residues in contact with TYR 181 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23A LEU* 3.7 25.6 - - + -
27A GLU* 3.2 33.2 + - - +
126A ILE* 3.9 13.8 - - + +
129A LEU* 3.9 15.0 - - + +
130A LYS* 3.3 44.7 - - + +
133A PHE* 3.7 29.4 - + + -
177A THR 2.9 18.4 + - - +
178A MET* 3.4 6.5 - - - +
180A HIS* 1.3 76.9 - - - +
182A PHE* 1.3 58.9 + + - +
184A ALA* 3.3 4.4 + - + +
185A LEU* 2.9 52.9 + - + +
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Residues in contact with PHE 182 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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7A LEU* 3.7 37.9 - - + +
8A PRO* 3.9 13.0 - - + -
9A ILE* 3.8 14.4 - - + -
12A THR* 3.4 26.0 - - + -
19A THR* 3.7 28.9 - - + -
23A LEU* 3.6 37.2 - - + -
178A MET* 2.9 41.0 + - + +
179A MET* 3.5 4.9 - - - +
181A TYR* 1.3 79.0 - + + +
183A CYS* 1.3 57.3 + - - +
185A LEU* 3.2 2.8 + - - +
186A ASN* 2.9 35.7 + - - +
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Residues in contact with CYS 183 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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9A ILE* 4.0 13.7 - - - -
179A MET 2.9 15.6 + - - +
180A HIS* 3.8 4.0 - - - +
182A PHE* 1.3 75.8 - - - +
184A ALA* 1.3 56.3 + - - +
186A ASN 3.3 0.3 + - - -
187A THR* 2.9 35.1 + - - -
247B MET* 3.4 46.5 - - + +
248B ARG* 6.0 0.2 - - - -
251B GLN* 3.2 29.2 - - - +
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Residues in contact with ALA 184 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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125A GLU* 5.2 9.6 - - + +
126A ILE* 3.6 20.4 - - + +
129A LEU* 3.8 18.2 - - + -
180A HIS 2.9 19.1 + - - +
181A TYR* 3.4 6.5 - - + +
183A CYS* 1.3 78.0 - - - +
185A LEU* 1.3 56.4 + - - +
187A THR* 3.5 6.2 + - - -
188A LEU* 2.9 28.1 + - - +
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Residues in contact with LEU 185 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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7A LEU* 3.7 17.7 - - + -
23A LEU* 3.6 25.8 - - + -
26A PHE* 4.3 18.8 - - + +
27A GLU* 5.0 1.8 - - + +
30A ALA* 4.2 25.1 - - + -
126A ILE* 4.1 19.3 - - + -
181A TYR* 2.9 47.2 + - + +
182A PHE 3.6 3.8 - - - +
184A ALA* 1.3 74.9 - - - +
186A ASN* 1.3 60.2 + - - +
188A LEU* 3.1 9.4 + - + +
189A GLN* 3.0 38.1 + - - +
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Residues in contact with ASN 186 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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5A ASP 4.8 1.0 - - - +
6A LYS* 3.3 16.2 - - + +
7A LEU* 2.6 54.3 + - - +
9A ILE* 4.9 3.0 - - - +
26A PHE* 4.1 2.4 - - - -
182A PHE* 2.9 23.5 + - - +
183A CYS 3.3 0.4 + - - +
185A LEU* 1.3 75.0 - - - +
187A THR* 1.3 62.5 + - - +
189A GLN* 3.3 22.4 - - - +
190A TYR* 3.7 14.2 - - + -
247B MET* 3.4 33.2 - - + -
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Residues in contact with THR 187 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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183A CYS* 2.9 19.9 + - - +
184A ALA* 3.8 6.1 - - - -
186A ASN* 1.3 73.8 - - - +
188A LEU* 1.3 66.6 + - - +
190A TYR* 3.0 21.5 + - - +
191A LYS* 3.0 35.5 + - + +
240B LEU* 4.2 20.2 - - + +
244B ALA* 4.4 13.1 - - + +
247B MET* 3.5 13.9 - - - +
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Residues in contact with LEU 188 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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30A ALA* 4.1 26.5 - - + -
33A ILE* 4.3 17.5 - - + -
118A PHE* 4.0 32.1 - - + -
122A ASP* 5.0 6.1 - - + -
123A LEU* 4.5 10.3 - - + -
126A ILE* 4.3 20.9 - - + -
184A ALA 2.9 16.0 + - - +
185A LEU* 3.2 24.0 - - + +
187A THR* 1.3 77.4 - - - +
189A GLN* 1.3 63.9 + - - +
191A LYS* 4.0 9.4 - - + -
192A LYS* 3.0 26.2 + - + +
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Residues in contact with GLN 189 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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4A MET* 4.5 17.5 - - + +
5A ASP 3.3 28.2 + - - +
26A PHE* 3.5 30.6 + - + -
29A ASP* 3.7 11.7 + - - -
33A ILE* 5.3 0.2 - - - +
185A LEU* 3.0 30.7 + - - +
186A ASN* 3.3 11.7 - - - +
187A THR 3.1 0.6 - - - -
188A LEU* 1.3 85.7 - - - +
190A TYR* 1.3 59.1 + - + +
192A LYS* 3.1 51.3 + - - +
193A LYS* 4.2 6.4 - - - +
75B LEU* 3.2 11.2 - - - +
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Residues in contact with TYR 190 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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4A MET* 3.7 27.7 - - + +
186A ASN* 3.7 18.8 - - + -
187A THR* 3.0 9.1 + - - +
189A GLN* 1.3 76.3 - - - +
191A LYS* 1.3 64.2 + - - +
192A LYS 3.2 2.2 - - - -
193A LYS* 3.1 21.7 + - - +
194A ILE* 3.5 9.4 + - - +
236B ILE* 3.9 21.7 - - + +
239B GLU* 4.2 24.5 + - + +
240B LEU* 3.5 36.8 - - + -
243B GLU* 3.3 39.7 - - + +
247B MET* 6.4 1.1 - - + -
----------------------------------------------------------
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Residues in contact with LYS 191 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118A PHE* 3.9 12.9 - - + -
121A ARG* 4.5 11.6 - - - +
122A ASP* 2.5 44.8 + - + +
125A GLU* 4.9 7.9 + - - -
187A THR* 3.0 30.7 + - + +
188A LEU* 3.1 12.3 + - + +
190A TYR* 1.3 78.2 - - - +
192A LYS* 1.3 56.1 + - - +
194A ILE* 3.5 6.6 + - + +
195A ALA* 2.8 29.5 + - - +
240B LEU* 3.6 24.0 - - + -
----------------------------------------------------------
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Residues in contact with LYS 192 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4A MET* 6.3 1.8 - - - +
29A ASP* 3.7 18.8 + - - -
33A ILE* 3.6 38.3 - - + +
118A PHE* 4.2 5.6 - - + -
188A LEU* 3.0 12.8 + - + +
189A GLN* 3.1 45.2 + - - +
191A LYS* 1.3 74.8 - - - +
193A LYS* 1.3 87.0 + - + +
195A ALA* 3.2 7.4 + - - +
196A LEU* 2.9 36.5 + - + +
68B TYR* 5.9 2.2 - - - +
75B LEU* 4.1 6.1 - - - +
----------------------------------------------------------
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Residues in contact with LYS 193 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
189A GLN 4.2 8.3 - - - +
190A TYR* 3.1 12.0 + - - +
192A LYS* 1.3 97.4 - - + +
194A ILE* 1.3 57.3 + - - +
196A LEU* 3.1 8.3 + - + +
197A LEU* 3.0 35.9 + - - +
68B TYR* 4.3 10.3 - - - +
79B ASP* 3.0 41.0 + - - +
81B GLU* 5.2 0.8 + - - +
82B VAL* 3.3 34.0 - - + +
236B ILE* 4.1 25.8 - - + -
----------------------------------------------------------
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Residues in contact with ILE 194 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
190A TYR 3.9 2.5 - - - +
191A LYS* 3.5 8.4 + - + +
192A LYS 3.3 0.2 - - - -
193A LYS* 1.3 75.8 - - - +
195A ALA* 1.3 57.8 + - - +
197A LEU* 4.4 4.9 - - - +
198A GLU* 2.9 49.9 + - + +
233B VAL* 4.2 25.8 - - + +
236B ILE* 3.8 19.1 - - + -
237B GLN* 3.8 48.7 - - + +
240B LEU* 4.0 20.0 - - + -
----------------------------------------------------------
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Residues in contact with ALA 195 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37A MET* 3.6 16.4 - - + +
40A LEU* 5.0 0.2 - - - +
114A PRO 6.1 1.1 - - - -
115A ILE* 5.1 2.0 - - - +
118A PHE* 3.5 44.2 - - + -
191A LYS 2.8 19.7 + - - +
192A LYS 3.4 6.7 - - - +
193A LYS 3.2 0.2 - - - -
194A ILE* 1.3 78.3 - - - +
196A LEU* 1.3 57.1 + - - +
198A GLU* 5.9 0.7 - - - -
199A PRO* 3.1 25.2 - - - +
----------------------------------------------------------
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Residues in contact with LEU 196 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33A ILE* 6.0 1.1 - - + -
36A TYR* 4.1 12.8 - - + -
37A MET* 3.5 25.1 - - + -
40A LEU* 4.8 8.0 - - + +
192A LYS* 2.9 32.0 + - + +
193A LYS* 3.5 9.9 - - + +
195A ALA* 1.3 80.3 - - - +
197A LEU* 1.3 65.6 + - + +
199A PRO* 3.8 8.0 - - - +
200A LEU* 3.7 20.9 - - - +
68B TYR* 3.5 39.3 - - + +
82B VAL* 4.9 6.7 - - + -
86B LEU* 3.5 31.9 - - + -
----------------------------------------------------------
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Residues in contact with LEU 197 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
193A LYS 3.0 20.0 + - - +
194A ILE 4.2 0.4 - - - +
196A LEU* 1.3 77.9 - - + +
198A GLU* 1.3 60.1 + - - +
200A LEU* 3.4 4.9 + - - +
201A LEU* 3.0 30.2 + - - +
82B VAL* 4.0 22.7 - - + -
85B THR* 3.7 35.4 - - + -
86B LEU* 4.0 16.2 - - + -
89B PHE* 4.7 4.0 - - + -
229B VAL* 4.8 4.2 - - + +
232B MET* 4.0 22.9 - - + -
233B VAL* 3.6 28.3 - - + -
236B ILE* 4.4 11.2 - - + -
----------------------------------------------------------
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Residues in contact with GLU 198 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110A ALA 4.2 3.0 - - - +
114A PRO* 3.7 25.4 - - + +
194A ILE* 2.9 39.2 + - + +
195A ALA* 5.9 0.5 - - - -
197A LEU* 1.3 73.1 - - - +
199A PRO* 1.4 59.9 - - + +
201A LEU* 3.3 15.2 + - + +
202A GLY* 2.9 24.3 + - - -
233B VAL* 4.7 11.5 - - + +
234B GLN* 5.5 4.3 + - - -
237B GLN* 5.6 0.9 - - - +
----------------------------------------------------------
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Residues in contact with PRO 199 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40A LEU* 5.2 0.2 - - + -
44A MET* 3.7 25.6 - - + -
110A ALA 4.0 10.5 - - - +
111A MET* 3.5 27.7 - - - +
114A PRO* 4.4 9.9 - - + -
115A ILE* 4.5 12.8 - - + +
194A ILE 3.9 0.7 - - - +
195A ALA* 3.1 27.1 - - - +
196A LEU* 3.8 5.4 - - - +
197A LEU 3.7 0.4 - - - -
198A GLU* 1.4 96.3 - - + +
200A LEU* 1.3 57.7 + - - +
202A GLY* 3.2 1.9 + - - -
203A TYR* 2.9 27.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU 200 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40A LEU* 5.4 1.8 - - + -
44A MET* 4.0 18.6 - - + -
196A LEU* 3.7 14.4 - - + +
197A LEU* 3.4 6.7 + - - +
198A GLU 3.3 0.4 - - - -
199A PRO* 1.3 77.2 - - - +
201A LEU* 1.3 60.5 + - - +
203A TYR* 3.2 13.1 + - + +
204A MET* 2.9 37.1 + - + +
61B LEU* 4.5 15.0 - - + -
65B LEU* 3.6 45.3 - - + -
86B LEU* 4.1 13.7 - - + -
89B PHE* 3.7 33.0 - - + -
----------------------------------------------------------
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Residues in contact with LEU 201 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
197A LEU 3.0 17.3 + - - +
198A GLU* 3.4 13.2 - - + +
200A LEU* 1.3 76.4 - - - +
202A GLY* 1.3 57.1 + - - +
204A MET* 3.4 4.4 + - - +
205A GLN* 3.0 36.1 + - + +
89B PHE* 4.5 6.0 - - + -
226B LEU* 3.2 47.1 - - + +
229B VAL* 3.8 19.5 - - + -
230B ALA* 3.8 28.0 - - + +
233B VAL* 4.8 9.6 - - + -
----------------------------------------------------------
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Residues in contact with GLY 202 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106A GLN* 5.5 0.3 + - - -
110A ALA* 3.9 30.7 - - - +
111A MET* 4.8 1.1 - - - -
198A GLU 2.9 14.5 + - - -
199A PRO 3.5 4.3 - - - -
200A LEU 3.2 0.2 - - - -
201A LEU* 1.3 74.7 - - - +
203A TYR* 1.3 59.1 + - - +
205A GLN* 3.4 4.9 + - - +
206A ALA* 2.9 31.0 + - - +
----------------------------------------------------------
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Residues in contact with TYR 203 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44A MET* 6.1 0.2 - - + -
47A ILE* 3.6 25.7 - - + +
107A LEU* 3.5 25.6 - - + -
111A MET* 3.8 17.8 - - - +
199A PRO 2.9 14.6 + - - +
200A LEU* 3.2 15.4 + - + +
202A GLY* 1.3 75.5 - - - +
204A MET* 1.3 74.8 + - + +
206A ALA* 3.3 4.3 + - - +
207A GLN* 2.9 59.6 + - + +
54B MET* 5.3 1.4 - - - -
58B THR* 3.8 20.1 - - - +
61B LEU* 3.9 26.5 - - + +
93B VAL* 4.2 12.4 - - + +
96B LEU* 3.8 18.8 - - + +
100B HIS* 5.7 0.2 + - - -
----------------------------------------------------------
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Residues in contact with MET 204 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
200A LEU* 2.9 21.7 + - + +
201A LEU 3.8 0.9 - - - +
203A TYR* 1.3 90.4 - - + +
205A GLN* 1.3 56.8 + - - +
207A GLN* 3.1 6.1 + - - +
208A ILE* 2.9 30.3 + - - +
89B PHE* 3.7 41.5 - - + +
92B VAL* 3.7 23.3 - - + -
93B VAL* 3.7 26.7 - - + -
218B PHE* 3.8 24.1 - - + -
222B MET* 5.9 2.7 - - + +
226B LEU* 3.6 24.5 - - + -
----------------------------------------------------------
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Residues in contact with GLN 205 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106A GLN* 4.3 8.2 + - - +
201A LEU* 3.0 21.8 + - + +
202A GLY* 4.0 5.4 - - - +
204A MET* 1.3 76.1 - - - +
206A ALA* 1.3 57.3 + - - +
208A ILE* 3.3 13.0 + - - +
209A SER* 3.0 29.5 + - - -
223B ASP* 3.0 31.8 + - - +
226B LEU* 3.7 24.9 - - + +
227B SER 5.6 0.2 - - - +
----------------------------------------------------------
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Residues in contact with ALA 206 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103A LEU* 3.4 21.2 - - + +
106A GLN* 3.9 28.9 - - + +
107A LEU* 4.0 15.0 - - + +
202A GLY 2.9 18.6 + - - +
203A TYR 3.3 5.8 - - - +
205A GLN* 1.3 75.1 - - - +
207A GLN* 1.3 59.7 + - - +
209A SER* 3.0 4.0 + - - -
210A PHE* 2.9 30.3 + - - +
----------------------------------------------------------
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Residues in contact with GLN 207 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47A ILE* 5.8 0.2 - - - +
51A GLN* 5.1 3.0 - - - +
103A LEU* 3.8 26.1 - - - +
107A LEU* 4.9 3.0 - - - +
203A TYR* 2.9 49.6 + - + +
204A MET* 3.4 7.4 - - - +
206A ALA* 1.3 75.6 - - - +
208A ILE* 1.3 57.6 + - - +
210A PHE* 3.3 10.0 + - - +
211A PHE* 2.9 51.1 + - - -
54B MET* 6.4 0.2 - - - +
96B LEU* 3.4 30.6 - - + +
100B HIS* 5.1 3.4 + - - -
218B PHE* 3.6 21.8 - - + -
----------------------------------------------------------
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Residues in contact with ILE 208 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204A MET 2.9 14.0 + - - +
205A GLN* 3.4 19.1 - - - +
206A ALA 3.2 0.2 - - - -
207A GLN* 1.3 76.3 - - - +
209A SER* 1.3 64.8 + - - +
211A PHE* 3.3 1.7 + - - +
212A LYS* 3.0 29.9 + - + +
218B PHE* 3.6 34.2 - - + +
219B SER 4.5 3.4 - - - +
222B MET* 4.4 5.6 - - + -
223B ASP* 3.7 35.7 - - + +
226B LEU* 3.6 27.4 - - + -
----------------------------------------------------------
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Residues in contact with SER 209 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102A VAL* 5.8 2.8 - - - +
103A LEU* 5.3 1.2 - - - +
106A GLN* 2.6 32.4 + - - -
205A GLN* 3.0 14.2 + - - -
206A ALA 3.0 5.5 + - - -
208A ILE* 1.3 78.4 - - - +
210A PHE* 1.3 66.3 + - - +
212A LYS* 3.4 7.7 + - - +
213A MET* 3.0 26.8 + - - +
----------------------------------------------------------
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Residues in contact with PHE 210 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99A CYS* 3.7 45.2 - - + -
100A HIS* 3.9 23.6 - + - -
102A VAL* 5.4 3.6 - - + -
103A LEU* 3.5 36.3 - - + -
206A ALA 2.9 13.8 + - - +
207A GLN* 3.4 6.5 - - - +
208A ILE 3.2 0.2 - - - -
209A SER* 1.3 83.2 + - - +
211A PHE* 1.3 88.2 + + - +
213A MET* 3.3 6.9 + - + +
214A GLY* 3.0 26.3 + - - -
100B HIS* 6.0 1.8 - + - -
210B PHE* 4.0 9.0 - + - -
211B PHE* 3.4 29.7 - + - -
----------------------------------------------------------
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Residues in contact with PHE 211 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
207A GLN* 2.9 45.4 + - - +
208A ILE* 4.1 3.8 - - - +
210A PHE* 1.3 85.0 - + - +
212A LYS* 1.3 57.9 + - - +
215A SER* 2.9 28.6 + - - -
96B LEU* 3.6 28.3 - - + -
99B LEU* 4.7 0.2 - - + -
210B PHE* 3.5 40.4 - + - -
211B PHE* 4.0 19.6 - + - +
214B GLY* 3.5 28.7 - - - +
215B ALA* 3.9 19.6 - - - +
218B PHE* 3.7 23.8 - + + +
----------------------------------------------------------
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Residues in contact with LYS 212 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
208A ILE* 3.0 23.8 + - + +
209A SER* 3.8 7.2 - - - +
211A PHE* 1.3 74.7 - - - +
213A MET* 1.3 68.6 + - - +
215A SER* 2.2 29.9 + - - +
216A GLU* 3.1 17.1 + - - +
215B ALA* 5.7 0.9 - - - -
----------------------------------------------------------
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Residues in contact with MET 213 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95A GLU* 5.1 2.7 - - + +
98A SER* 3.9 16.8 - - - +
99A CYS* 3.6 35.6 - - - +
102A VAL* 3.5 28.7 - - + -
209A SER 3.0 18.4 + - - +
210A PHE* 3.5 5.4 - - - +
212A LYS* 1.3 79.4 - - - +
214A GLY* 1.3 63.0 + - - +
217A ASN* 3.0 47.3 + - + +
----------------------------------------------------------
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Residues in contact with GLY 214 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99A CYS* 4.1 5.8 - - - -
210A PHE 3.0 10.5 + - - -
213A MET* 1.3 75.7 - - - +
215A SER* 1.3 63.0 + - - +
218A LEU* 3.0 33.1 + - - +
219A ASN* 3.1 10.7 + - - +
211B PHE* 3.7 31.1 - - - +
----------------------------------------------------------
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Residues in contact with SER 215 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
211A PHE 2.9 20.3 + - - -
212A LYS* 2.2 31.4 + - - +
214A GLY* 1.3 73.5 - - - +
216A GLU* 1.3 73.2 + - - +
219A ASN* 2.9 28.9 + - - +
211B PHE* 4.3 8.8 - - - -
215B ALA* 4.1 17.7 - - - -
----------------------------------------------------------
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Residues in contact with GLU 216 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
212A LYS* 3.1 15.5 + - - +
215A SER* 1.3 91.3 + - - +
217A ASN* 1.3 71.3 + - - +
219A ASN* 4.9 0.7 - - - -
220A GLU* 4.7 9.3 - - - +
----------------------------------------------------------
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Residues in contact with ASN 217 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95A GLU* 4.0 13.5 - - + +
213A MET* 3.0 36.1 + - + +
216A GLU* 1.3 89.1 - - - +
218A LEU* 1.3 66.5 + - - +
219A ASN 3.2 2.1 + - - -
220A GLU* 3.5 11.9 + - - +
221A GLN* 3.4 19.9 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il