Contacts of the helix formed by residues 156 - 218 (chain B) in PDB entry 5C5B
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 156 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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151B PRO* 5.3 4.8 - - + +
154B LYS 4.0 2.4 + - - -
155B GLU* 1.3 70.1 - - - +
157B GLU* 1.3 69.2 + - - +
158B LYS* 3.4 17.1 + - - +
159B VAL* 4.0 26.0 - - + +
160B LYS* 3.0 23.3 + - - +
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Residues in contact with GLU 157 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
155B GLU* 3.5 13.3 + - + +
156B ASN* 1.3 74.4 + - - +
158B LYS* 1.3 53.9 + - - +
160B LYS* 3.6 25.3 + - + +
161B THR* 2.7 37.9 + - - -
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Residues in contact with LYS 158 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156B ASN* 3.2 12.0 + - - +
157B GLU* 1.3 76.0 - - - +
159B VAL* 1.3 66.0 + - - +
161B THR* 3.2 11.8 - - - +
162B GLU* 2.9 28.8 + - - +
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Residues in contact with VAL 159 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150B LEU* 3.9 21.8 - - + -
151B PRO* 5.4 5.8 - - + -
156B ASN* 3.5 27.6 + - + +
158B LYS* 1.3 76.9 - - - +
160B LYS* 1.3 59.8 + - + +
162B GLU* 3.9 6.5 - - - +
163B VAL* 2.9 40.0 + - + +
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Residues in contact with LYS 160 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265A ASP* 5.0 6.7 - - - -
339A ARG* 3.4 33.0 - - - +
147B TYR* 4.6 3.9 - - + -
150B LEU* 3.7 26.7 - - + +
151B PRO* 6.3 1.6 - - + -
155B GLU* 4.0 22.7 - - + +
156B ASN 3.0 18.8 + - - +
157B GLU* 3.6 25.9 + - + +
159B VAL* 1.3 79.4 - - + +
161B THR* 1.3 62.8 + - - +
163B VAL* 3.8 1.7 - - - +
164B GLY* 2.9 25.1 + - - -
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Residues in contact with THR 161 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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157B GLU 2.7 20.3 + - - +
158B LYS* 3.2 17.7 - - - +
160B LYS* 1.3 81.6 - - - +
162B GLU* 1.3 66.0 + - + +
164B GLY* 3.4 2.2 + - - -
165B LYS* 2.9 26.0 + - - +
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Residues in contact with GLU 162 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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158B LYS 2.9 19.2 + - - +
159B VAL* 4.0 5.5 - - - +
161B THR* 1.3 79.1 - - + +
163B VAL* 1.3 60.4 + - + +
165B LYS* 2.9 11.5 + - + +
166B GLU* 2.9 35.9 + - + +
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Residues in contact with VAL 163 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146B LYS* 3.7 27.4 - - + +
147B TYR* 3.6 37.0 - - + -
150B LEU* 3.9 17.5 - - + -
159B VAL* 2.9 31.3 + - + +
160B LYS 3.8 3.4 - - - +
162B GLU* 1.3 74.8 - - + +
164B GLY* 1.3 63.6 + - - +
166B GLU* 3.2 21.5 + - - +
167B VAL* 2.9 23.1 + - + +
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Residues in contact with GLY 164 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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264A PRO* 3.3 31.7 - - - +
147B TYR* 3.7 10.1 - - - -
160B LYS 2.9 15.6 + - - -
161B THR* 3.6 5.6 - - - -
162B GLU 3.2 0.2 - - - -
163B VAL* 1.3 76.2 - - - +
165B LYS* 1.3 56.4 + - - +
167B VAL 3.3 0.5 + - - -
168B ALA* 2.9 24.6 + - - +
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Residues in contact with LYS 165 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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161B THR 2.9 13.8 + - - +
162B GLU* 2.9 16.4 + - + +
164B GLY* 1.3 74.5 - - - +
166B GLU* 1.3 65.4 + - - +
168B ALA* 3.2 6.8 + - - +
169B ALA* 2.9 25.7 + - - +
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Residues in contact with GLU 166 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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143B SER* 4.2 11.6 + - - +
146B LYS* 3.3 36.2 + - - +
162B GLU* 2.9 19.6 + - + +
163B VAL* 3.3 25.8 + - - +
165B LYS* 1.3 72.8 - - - +
167B VAL* 1.3 60.4 + - + +
169B ALA* 3.2 5.5 + - - +
170B ALA* 2.9 30.7 + - - +
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Residues in contact with VAL 167 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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264A PRO* 4.0 16.2 - - + -
358A GLU* 4.1 4.0 - - - +
140B HIS* 4.0 1.8 - - + +
143B SER* 3.3 38.8 - - - +
144B MET* 4.3 8.5 - - + -
147B TYR* 3.5 19.5 - - + -
163B VAL* 2.9 17.9 + - + +
164B GLY 3.5 7.6 - - - +
165B LYS 3.2 0.2 - - - -
166B GLU* 1.3 75.3 - - + +
168B ALA* 1.3 57.4 + - - +
170B ALA* 3.9 1.2 - - - +
171B ARG* 2.9 58.0 + - - +
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Residues in contact with ALA 168 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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262A TYR* 3.3 37.1 - - + +
263A VAL* 4.1 9.2 - - + +
264A PRO* 3.9 4.5 - - + -
164B GLY 2.9 17.4 + - - +
165B LYS* 3.2 8.3 + - - +
167B VAL* 1.3 76.0 - - - +
169B ALA* 1.3 58.0 + - - +
171B ARG* 3.4 2.5 + - - +
172B ARG* 2.9 29.6 + - - +
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Residues in contact with ALA 169 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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165B LYS 2.9 17.0 + - - +
166B GLU* 3.6 6.7 - - - +
168B ALA* 1.3 73.6 - - - +
170B ALA* 1.3 66.1 + - - +
172B ARG* 3.2 8.6 + - - +
173B LYS* 2.9 24.9 + - - +
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Residues in contact with ALA 170 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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136B ALA 4.6 1.9 - - - +
139B GLU* 4.4 7.0 - - + +
140B HIS* 3.7 22.9 - - - +
143B SER* 3.5 26.0 - - - +
166B GLU 2.9 11.8 + - - +
167B VAL 3.9 2.7 - - - +
169B ALA* 1.3 76.0 - - - +
171B ARG* 1.3 58.3 + - - +
173B LYS* 3.4 10.7 + - - +
174B GLN* 2.9 31.5 + - - +
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Residues in contact with ARG 171 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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261A LEU 4.3 9.3 + - - -
262A TYR* 3.6 36.1 + - + +
263A VAL 4.4 0.8 + - - -
264A PRO* 3.8 9.3 + - - +
358A GLU* 2.4 45.6 + - - -
13B LEU* 4.4 14.3 - - + +
140B HIS* 3.1 35.3 + - + +
144B MET* 3.9 6.7 - - - -
167B VAL* 2.9 34.2 + - - +
168B ALA 3.6 5.4 - - - +
170B ALA* 1.3 77.2 - - - +
172B ARG* 1.3 56.0 + - - +
174B GLN* 3.5 2.4 + - - +
175B HIS* 2.9 28.2 + - - +
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Residues in contact with ARG 172 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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259A ASP* 3.6 17.8 + - - -
262A TYR* 3.5 38.6 - - + +
168B ALA 2.9 18.9 + - - +
169B ALA* 3.6 6.7 - - - +
171B ARG* 1.3 75.5 - - - +
173B LYS* 1.3 64.7 + - - +
175B HIS* 3.1 3.5 + - - +
176B LEU* 3.0 56.8 + - + +
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Residues in contact with LYS 173 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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135B LEU* 4.2 9.8 - - + +
136B ALA* 3.9 22.9 - - + +
139B GLU* 2.4 37.2 + - - -
169B ALA 2.9 15.5 + - - +
170B ALA* 3.8 9.0 - - - +
172B ARG* 1.3 77.2 - - - +
174B GLN* 1.3 57.6 + - - +
176B LEU* 3.3 13.5 + - + +
177B SER* 2.9 28.8 + - - -
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Residues in contact with GLN 174 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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314A ARG* 4.9 2.5 + - - +
12B ALA 5.8 0.6 + - - -
15B ASP* 3.8 19.2 + - - +
20B ARG* 3.5 26.5 - - - +
133B PHE* 4.3 2.8 - - + -
136B ALA* 3.7 17.4 - - + +
137B SER* 3.7 14.3 - - - +
140B HIS* 2.6 39.9 + - + +
141B ASP* 5.3 1.4 - - - +
170B ALA 2.9 16.9 + - - +
171B ARG 3.9 4.0 - - - +
173B LYS* 1.3 74.6 - - - +
175B HIS* 1.3 59.8 + - - +
177B SER* 2.7 16.6 + - - +
178B SER* 2.5 39.5 + - - +
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Residues in contact with HIS 175 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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254A LEU* 4.1 9.2 - - + +
255A GLU* 5.4 0.4 - - - -
258A SER* 3.1 28.5 - - - -
262A TYR* 2.7 27.9 + - + -
9B LEU 4.6 2.4 + - - -
10B GLU 5.9 0.2 + - - -
12B ALA* 4.3 5.4 - - + +
13B LEU* 3.3 48.2 + - + +
171B ARG 2.9 17.9 + - - +
172B ARG 3.1 5.6 + - - +
174B GLN* 1.3 79.7 - - - +
176B LEU* 1.3 58.5 + - - +
178B SER* 3.5 3.1 - - - -
179B LEU* 2.9 61.1 + - + +
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Residues in contact with LEU 176 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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255A GLU* 3.5 42.8 - - + +
262A TYR* 4.7 9.2 - - - +
172B ARG* 3.0 62.1 + - + +
173B LYS* 3.7 9.9 - - + +
175B HIS* 1.3 76.8 - - - +
177B SER* 1.3 57.2 + - - +
179B LEU* 3.2 8.5 + - + +
180B GLN* 3.0 36.4 + - + +
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Residues in contact with SER 177 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129B LEU* 4.7 3.5 - - - +
132B LEU* 4.2 11.0 - - - -
133B PHE* 3.7 27.2 - - - +
136B ALA* 3.7 8.4 - - - +
173B LYS* 2.9 11.3 + - - -
174B GLN* 2.7 30.3 + - - -
176B LEU* 1.3 76.4 - - - +
178B SER* 1.3 57.8 + - - +
180B GLN* 3.4 7.2 + - - +
181B TYR* 2.9 30.9 + - - +
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Residues in contact with SER 178 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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12B ALA* 4.3 21.0 + - - -
15B ASP* 5.3 0.9 + - - -
133B PHE* 3.1 33.3 - - - -
174B GLN* 2.5 30.0 + - - +
175B HIS* 3.5 6.3 - - - -
177B SER* 1.3 73.6 + - - +
179B LEU* 1.3 61.0 + - - +
181B TYR* 4.4 1.6 - - - -
182B TYR* 2.9 44.8 + - - -
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Residues in contact with LEU 179 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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251A ILE* 3.7 21.5 - - + +
254A LEU* 4.0 15.3 - - + -
255A GLU* 3.8 29.8 - - + +
9B LEU* 3.4 49.9 - - + +
12B ALA* 4.0 8.3 - - + -
175B HIS* 2.9 41.4 + - + +
176B LEU* 3.2 7.8 + - - +
178B SER* 1.3 76.9 - - - +
180B GLN* 1.3 56.8 + - - +
183B CYS* 3.0 31.7 + - - +
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Residues in contact with GLN 180 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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251A ILE* 3.8 31.1 - - - +
255A GLU* 4.1 8.7 + - - +
129B LEU* 3.9 27.9 - - + +
176B LEU* 3.0 22.8 + - + +
177B SER* 3.6 6.7 - - - +
179B LEU* 1.3 76.1 - - - +
181B TYR* 1.3 56.4 + - - +
183B CYS* 3.5 4.8 + - - +
184B ALA* 2.9 28.4 + - - +
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Residues in contact with TYR 181 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23B LEU* 3.9 16.4 - - + -
27B GLU* 3.1 40.6 - - - +
30B ALA* 5.9 0.7 - - - +
126B VAL* 3.9 12.1 - - + +
129B LEU* 4.3 12.9 - - + +
130B LYS* 3.2 45.2 - - + +
133B PHE* 3.7 27.1 - + + -
177B SER 2.9 17.5 + - - +
178B SER 3.8 4.0 - - - +
180B GLN* 1.3 75.8 - - - +
182B TYR* 1.3 62.0 + + + +
184B ALA* 3.1 7.4 + - + +
185B LEU* 2.9 54.0 + - + +
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Residues in contact with TYR 182 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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7B LEU* 3.8 32.4 - - + +
8B LEU 4.2 12.3 - - - -
9B LEU* 3.6 14.6 - - + -
12B ALA* 3.7 34.1 + - + -
15B ASP* 4.4 8.3 + - - -
19B THR* 3.8 24.9 - - + +
20B ARG* 4.5 1.0 + - - -
23B LEU* 3.5 42.1 - - + +
133B PHE* 4.3 9.2 - + - -
178B SER* 2.9 30.4 + - - +
181B TYR* 1.3 79.9 - + + +
183B CYS* 1.3 66.1 + - - +
185B LEU* 3.2 2.3 + - - +
186B ASN* 3.0 31.1 + - - -
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Residues in contact with CYS 183 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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244A ILE* 4.8 9.4 - - - -
247A MET* 3.8 41.3 - - - +
248A GLN* 4.9 3.4 - - - -
251A ILE* 3.6 23.3 - - + -
9B LEU* 3.9 3.9 - - + +
179B LEU 3.0 18.8 + - - +
180B GLN* 3.7 5.4 - - - +
182B TYR* 1.3 75.3 - - - +
184B ALA* 1.3 57.8 + - - +
186B ASN* 3.8 1.4 - - - +
187B ALA* 2.9 31.4 + - - +
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Residues in contact with ALA 184 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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125B GLU* 6.4 0.2 - - + -
126B VAL* 4.3 19.4 - - + +
129B LEU* 3.7 21.8 - - + -
180B GLN 2.9 15.0 + - - +
181B TYR* 3.2 14.6 - - + +
183B CYS* 1.3 77.7 - - - +
185B LEU* 1.3 57.9 + - - +
187B ALA* 3.4 6.3 + - - +
188B LEU* 2.9 27.1 + - - +
191B ARG* 5.2 3.9 + - - +
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Residues in contact with LEU 185 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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7B LEU* 3.6 20.9 - - + -
23B LEU* 3.6 21.5 - - + -
26B PHE* 3.7 32.5 - - + +
30B ALA* 4.8 9.9 - - + -
126B VAL* 3.7 19.7 - - + -
181B TYR* 2.9 43.7 + - + +
182B TYR 3.8 5.4 - - - +
184B ALA* 1.3 72.4 - - - +
186B ASN* 1.3 62.3 + - - +
188B LEU* 2.9 30.3 + - + +
189B GLN* 3.0 20.9 + - - +
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Residues in contact with ASN 186 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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247A MET* 3.6 34.3 - - + -
6B LYS* 3.7 16.9 - - + +
7B LEU* 3.0 50.1 + - - +
9B LEU* 4.9 2.2 - - - +
26B PHE* 3.9 7.6 - - - -
182B TYR* 3.0 24.7 + - - +
183B CYS 3.8 0.4 - - - +
185B LEU* 1.3 74.4 - - - +
187B ALA* 1.3 61.9 + - - +
189B GLN* 3.4 21.6 - - - +
190B TYR* 3.7 15.0 - - + -
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Residues in contact with ALA 187 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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240A MET* 4.7 1.2 - - + +
244A ILE* 3.5 28.3 - - + -
247A MET* 4.2 1.0 - - - +
183B CYS* 2.9 19.9 + - - +
184B ALA* 3.5 6.5 - - - +
186B ASN* 1.3 73.8 - - - +
188B LEU* 1.3 60.4 - - - +
189B GLN 3.1 0.4 - - - -
190B TYR* 3.1 11.0 + - - +
191B ARG* 2.9 53.2 + - - +
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Residues in contact with LEU 188 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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29B ASP* 6.1 0.2 - - - +
30B ALA* 4.3 22.9 - - + -
33B LEU* 3.8 24.5 - - + -
118B PHE* 4.2 13.7 - - + -
122B ASP* 5.2 5.2 - - + +
123B LEU* 3.8 26.5 - - + -
126B VAL* 4.2 22.9 - - + -
184B ALA 2.9 15.3 + - - +
185B LEU* 2.9 20.2 + - + +
187B ALA* 1.3 75.8 - - - +
189B GLN* 1.3 63.0 + - - +
191B ARG* 4.1 8.3 - - + +
192B LYS* 2.9 31.6 + - - +
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Residues in contact with GLN 189 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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5B ASP 5.7 2.2 - - - +
6B LYS* 6.4 1.6 - - + -
26B PHE* 3.5 37.8 + - + -
29B ASP* 4.5 12.2 + - - +
185B LEU* 3.0 17.9 + - - +
186B ASN* 3.4 13.9 - - - +
187B ALA 3.1 0.2 - - - -
188B LEU* 1.3 85.6 - - - +
190B TYR* 1.3 62.8 + - + +
192B LYS* 3.3 49.7 + - - +
193B GLN* 3.7 10.1 + - - -
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Residues in contact with TYR 190 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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236A VAL* 4.4 13.1 - - + +
239A GLU* 3.2 43.7 + - + -
240A MET* 3.6 40.2 - - + -
243A ASP* 3.2 32.8 + - + -
244A ILE* 6.1 1.3 - - + -
247A MET* 5.7 3.4 - - + -
186B ASN* 3.7 18.4 - - + -
187B ALA* 3.1 6.1 + - - +
189B GLN* 1.3 77.5 - - + +
191B ARG* 1.3 63.1 + - - +
192B LYS 3.1 2.0 - - - -
193B GLN* 2.9 38.7 + - - +
194B MET* 3.0 13.9 + - - +
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Residues in contact with ARG 191 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
240A MET* 3.6 31.6 - - + +
244A ILE* 5.6 6.1 - - - +
118B PHE* 3.7 14.4 - - + -
122B ASP* 4.2 31.9 + - - +
184B ALA* 5.2 3.8 + - - +
187B ALA* 2.9 38.7 + - - +
188B LEU* 4.0 9.0 - - + +
190B TYR* 1.3 75.3 - - - +
192B LYS* 1.3 60.1 + - - +
194B MET* 3.9 8.5 - - + +
195B ALA* 2.9 31.0 + - - +
----------------------------------------------------------
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Residues in contact with LYS 192 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82A MET* 4.0 19.3 - - + -
29B ASP* 4.3 16.4 + - - -
33B LEU* 4.1 33.3 - - + +
118B PHE* 4.4 6.0 - - - -
188B LEU* 2.9 16.5 + - - +
189B GLN* 3.3 47.6 + - - +
191B ARG* 1.3 76.8 - - - +
193B GLN* 1.3 80.5 + - + +
195B ALA* 3.2 3.3 + - - +
196B MET* 3.0 35.9 + - + +
----------------------------------------------------------
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Residues in contact with GLN 193 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81A VAL* 3.3 31.0 - - - +
82A MET* 3.9 23.3 - - + +
236A VAL* 3.8 29.7 - - + +
189B GLN 3.7 13.2 + - - +
190B TYR* 2.9 22.9 + - - +
192B LYS* 1.3 94.7 - - + +
194B MET* 1.3 58.5 + - - +
196B MET* 3.3 1.2 + - - +
197B MET* 2.9 43.8 + - - +
----------------------------------------------------------
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Residues in contact with MET 194 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
233A VAL* 4.0 19.7 - - + +
236A VAL* 3.5 28.3 - - + -
237A ARG* 3.6 28.3 - - + -
240A MET* 4.3 23.3 - - + -
241A ASP* 5.9 0.4 - - - +
190B TYR 3.0 16.2 + - - +
191B ARG* 4.0 8.7 - - + +
193B GLN* 1.3 75.6 - - - +
195B ALA* 1.3 58.0 + - - +
197B MET* 4.6 3.1 - - - -
198B GLU* 3.0 36.4 + - - +
----------------------------------------------------------
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Residues in contact with ALA 195 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114B PRO* 5.4 2.7 - - - +
115B ILE* 4.4 10.0 + - + +
118B PHE* 3.4 43.7 - - + -
191B ARG 2.9 20.6 + - - +
192B LYS* 3.2 4.2 + - - +
194B MET* 1.3 77.2 - - - +
196B MET* 1.3 62.8 + - + +
198B GLU* 4.7 3.5 - - - +
199B PRO* 3.0 23.0 - - - +
----------------------------------------------------------
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Residues in contact with MET 196 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82A MET* 3.6 26.7 - - + -
86A LEU* 5.1 11.2 - - + -
33B LEU* 3.7 29.4 - - + -
36B TYR* 4.0 27.6 - - + -
37B THR* 4.2 13.5 - - + -
40B LEU* 4.0 22.4 - - + -
115B ILE* 6.1 1.3 - - + -
118B PHE* 4.7 1.1 - - + -
192B LYS* 3.0 32.0 + - - +
193B GLN 4.3 0.7 - - - +
195B ALA* 1.3 82.7 - - + +
197B MET* 1.3 62.5 + - + +
199B PRO* 3.6 7.7 - - - +
200B MET* 3.0 28.2 - - - +
----------------------------------------------------------
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Residues in contact with MET 197 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81A VAL* 4.8 7.0 - - + -
82A MET* 5.7 6.3 - - + -
85A THR* 3.7 28.5 - - + +
86A LEU* 5.9 0.7 - - + -
229A ILE* 3.6 22.8 - - + +
232A SER* 3.4 34.1 - - - -
233A VAL* 3.5 27.1 - - + -
236A VAL* 4.7 7.9 - - - -
193B GLN* 2.9 30.2 + - - +
194B MET* 3.2 2.7 + - - +
196B MET* 1.3 81.1 - - + +
198B GLU* 1.3 64.4 + - - +
199B PRO 3.4 0.2 - - - -
200B MET* 3.3 13.6 + - + +
201B ILE* 3.2 26.5 + - - +
----------------------------------------------------------
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Residues in contact with GLU 198 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
233A VAL* 5.0 3.7 - - + +
110B THR 3.8 4.8 - - - +
114B PRO* 3.5 26.8 - - + +
117B GLN* 4.8 7.6 + - - -
194B MET 3.0 16.0 + - - +
195B ALA* 4.7 3.8 - - - +
197B MET* 1.3 77.0 - - - +
199B PRO* 1.4 63.7 - - + +
201B ILE* 3.2 12.4 + - + +
202B GLY* 3.0 23.2 + - - -
----------------------------------------------------------
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Residues in contact with PRO 199 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89A PHE* 5.2 0.9 - - - -
40B LEU* 6.2 0.2 - - + -
44B MET* 5.6 1.1 - - - -
110B THR 3.5 11.7 - - - +
111B MET* 3.6 27.1 - - + +
114B PRO* 4.6 5.4 - - + -
115B ILE* 3.4 29.2 - - + -
195B ALA 3.0 26.5 - - - +
196B MET* 3.6 6.7 - - - +
197B MET 3.5 2.0 - - - -
198B GLU* 1.4 90.9 - - + +
200B MET* 1.3 61.6 + - + +
202B GLY* 3.8 0.2 - - - -
203B PHE* 2.9 31.5 + - - +
----------------------------------------------------------
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Residues in contact with MET 200 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65A LEU* 6.3 0.2 - - - -
85A THR* 3.8 17.9 - - - +
86A LEU* 4.0 19.7 - - - -
89A PHE* 3.4 41.2 - - + -
225A PHE* 3.4 36.7 - - + -
229A ILE* 3.6 24.9 - - + -
196B MET 3.0 23.3 - - - +
197B MET* 3.3 11.0 + - + +
198B GLU 3.2 0.2 - - - -
199B PRO* 1.3 78.2 - - + +
201B ILE* 1.3 56.2 + - - +
203B PHE* 3.7 1.9 - - - +
204B ALA* 2.9 29.8 + - - +
----------------------------------------------------------
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Residues in contact with ILE 201 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
225A PHE* 5.0 0.7 - - - -
226A LEU* 3.7 16.4 - - + -
229A ILE* 3.6 21.8 - - + +
230A GLY* 4.4 11.9 - - - +
233A VAL* 3.9 30.1 - - + -
197B MET 3.2 11.9 + - - +
198B GLU* 3.2 11.5 + - + +
200B MET* 1.3 73.8 - - - +
202B GLY* 1.3 60.7 + - - +
204B ALA* 3.2 2.4 + - - +
205B HIS* 2.9 50.3 + - + +
----------------------------------------------------------
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Residues in contact with GLY 202 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106B GLN* 4.5 2.3 + - - +
107B LEU* 5.8 0.2 - - - +
110B THR* 3.4 41.6 + - - -
198B GLU 3.0 11.7 + - - -
200B MET 3.4 0.2 - - - -
201B ILE* 1.3 77.2 - - - +
203B PHE* 1.3 55.7 + - - +
205B HIS* 3.3 8.1 + - - +
206B GLY* 2.9 26.5 + - - -
----------------------------------------------------------
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Residues in contact with PHE 203 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58A THR* 5.2 2.9 - - + -
89A PHE* 3.6 23.6 - + + -
92A VAL* 5.4 1.8 - - + -
93A ILE* 3.8 28.7 - - + -
96A LEU* 3.4 29.6 - - + -
222A LEU* 5.1 8.7 - - + -
47B VAL* 4.9 12.6 - - + -
107B LEU* 3.8 19.2 - - + +
111B MET* 3.6 30.0 - - - +
199B PRO 2.9 18.4 + - - +
200B MET 3.7 2.7 - - - +
202B GLY* 1.3 74.7 - - - +
204B ALA* 1.3 62.1 + - + +
206B GLY* 3.4 1.3 + - - -
207B GLN* 2.9 57.6 + - + +
----------------------------------------------------------
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Residues in contact with ALA 204 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89A PHE* 5.9 0.2 - - + -
222A LEU* 4.2 19.9 - - + +
225A PHE* 4.1 15.0 - - + -
226A LEU* 3.6 26.5 - - + -
200B MET 2.9 18.6 + - - +
201B ILE 3.2 5.1 + - - +
203B PHE* 1.3 79.6 - - + +
205B HIS* 1.3 57.2 + - - +
207B GLN* 3.3 2.4 + - - +
208B ILE* 2.9 34.6 + - - +
----------------------------------------------------------
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Residues in contact with HIS 205 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
226A LEU* 3.6 23.7 - - + +
106B GLN* 4.8 8.1 - - - +
201B ILE* 2.9 46.2 + - + +
202B GLY* 3.7 6.5 - - - +
204B ALA* 1.3 73.5 - - - +
206B GLY* 1.3 66.3 + - - +
208B ILE* 3.1 16.1 - - + +
209B ASN* 2.9 31.4 + - - +
----------------------------------------------------------
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Residues in contact with GLY 206 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103B LEU* 3.6 18.5 - - - +
106B GLN* 4.2 14.5 - - - +
107B LEU* 5.9 0.4 - - - -
202B GLY 2.9 15.1 + - - -
203B PHE* 3.8 3.6 - - - -
205B HIS* 1.3 75.1 - - - +
207B GLN* 1.3 57.5 + - - +
209B ASN* 2.7 30.8 - - - +
210B PHE* 3.0 14.6 + - - +
----------------------------------------------------------
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Residues in contact with GLN 207 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96A LEU* 3.7 18.2 - - + +
100A HIS* 5.2 2.3 + - - -
218A LEU* 5.4 0.4 - - + -
222A LEU* 3.8 18.6 - - + -
51B GLN* 4.9 4.2 - - - +
103B LEU* 3.6 28.6 - - - +
107B LEU* 4.6 2.4 - - - +
203B PHE* 2.9 53.8 + - + +
204B ALA* 3.6 4.9 - - - +
206B GLY* 1.3 76.2 - - - +
208B ILE* 1.3 56.8 + - - +
210B PHE* 3.4 6.4 + - - +
211B PHE* 2.9 62.7 + - + -
----------------------------------------------------------
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Residues in contact with ILE 208 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
219A ASN* 3.6 27.6 - - - +
222A LEU* 3.6 37.0 - - + -
223A GLU* 4.8 2.2 - - + +
226A LEU* 3.9 12.8 - - + -
204B ALA 2.9 12.5 + - - +
205B HIS* 3.1 39.5 - - + +
207B GLN* 1.3 76.1 - - - +
209B ASN* 1.3 58.6 + - + +
211B PHE* 3.9 1.7 - - - -
212B LYS* 2.9 37.1 + - - +
----------------------------------------------------------
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Residues in contact with ASN 209 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102B GLU* 4.9 13.8 + - - +
103B LEU* 5.3 2.4 + - - +
106B GLN* 4.2 17.0 - - - +
205B HIS* 2.9 25.1 + - - +
206B GLY* 2.7 19.5 - - - +
208B ILE* 1.3 78.0 - - + +
210B PHE* 1.3 79.8 + - - +
212B LYS* 4.5 4.9 - - - +
213B LYS* 2.9 43.3 + - + +
----------------------------------------------------------
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Residues in contact with PHE 210 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100A HIS* 5.5 4.9 - + - -
210A PHE* 4.0 16.6 - + - -
211A PHE* 3.5 30.0 - + - -
51B GLN* 4.9 0.2 - - - -
99B LEU* 3.9 34.0 - - + +
100B HIS* 3.6 42.4 - + - -
103B LEU* 3.6 30.1 - - + -
206B GLY 3.0 15.4 + - - +
207B GLN* 3.6 3.8 - - - +
208B ILE 3.3 0.2 - - - -
209B ASN* 1.3 86.7 + - - +
211B PHE* 1.3 79.1 + + - +
213B LYS* 3.9 1.9 - - - -
214B GLY* 2.9 25.6 + - - -
----------------------------------------------------------
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Residues in contact with PHE 211 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96A LEU* 3.6 14.6 - - + -
99A CYS* 4.7 2.7 - - + -
100A HIS* 5.4 0.2 - - - -
210A PHE* 3.4 45.8 - + - -
211A PHE* 4.0 18.6 - + - +
214A GLY* 3.7 36.8 - - - +
215A SER* 4.3 5.0 - - - +
218A LEU* 3.5 21.5 - - + -
219A ASN* 5.1 6.7 - - + +
222A LEU* 5.4 1.1 - - + -
207B GLN* 2.9 50.3 + - - +
208B ILE* 4.2 3.6 - - - +
210B PHE* 1.3 84.0 - + - +
212B LYS* 1.3 60.3 + - - +
214B GLY 3.8 0.2 - - - -
215B ALA* 2.9 29.1 + - - +
----------------------------------------------------------
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Residues in contact with LYS 212 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
215A SER* 6.4 0.4 - - - +
219A ASN* 3.9 31.0 + - - +
208B ILE* 2.9 22.6 + - - +
209B ASN* 3.9 4.9 - - - +
211B PHE* 1.3 77.5 - - - +
213B LYS* 1.3 59.9 + - + +
215B ALA* 3.3 6.4 + - + +
216B GLU* 2.9 27.8 + - + +
----------------------------------------------------------
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Residues in contact with LYS 213 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99B LEU* 3.7 27.0 - - + +
102B GLU* 6.4 0.6 - - + +
209B ASN* 2.9 26.2 + - + +
210B PHE* 5.0 0.4 - - - -
212B LYS* 1.3 75.5 - - + +
214B GLY* 1.3 59.4 + - - +
216B GLU* 3.4 8.4 + - + +
217B MET* 2.9 28.9 + - - +
----------------------------------------------------------
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Residues in contact with GLY 214 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
211A PHE* 3.5 35.6 - - - +
99B LEU* 3.5 12.5 - - - +
210B PHE 2.9 11.5 + - - -
212B LYS 3.2 0.2 - - - -
213B LYS* 1.3 74.3 - - - +
215B ALA* 1.3 63.3 + - - +
217B MET* 3.2 4.8 + - - +
218B PHE* 3.0 27.0 + - - -
----------------------------------------------------------
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Residues in contact with ALA 215 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
211A PHE* 3.9 22.3 - - - +
212A LYS* 5.7 0.7 - - - -
215A SER* 4.1 13.9 - - - -
211B PHE 2.9 18.5 + - - +
212B LYS* 3.5 7.6 - - + +
214B GLY* 1.3 75.7 - - - +
216B GLU* 1.3 59.7 + - - +
218B PHE 2.9 23.9 - - - +
219B SER* 4.1 2.4 + - - -
----------------------------------------------------------
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Residues in contact with GLU 216 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
212B LYS* 2.9 17.2 + - + +
213B LYS* 3.6 9.6 - - - +
215B ALA* 1.3 76.5 - - - +
217B MET* 1.3 64.3 + - - +
219B SER* 4.0 13.6 - - - -
----------------------------------------------------------
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Residues in contact with MET 217 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92B VAL* 4.2 7.9 - - + +
95B GLU* 3.5 39.7 - - + +
96B LEU* 3.7 19.5 - - - -
99B LEU* 3.5 36.8 - - + -
213B LYS 2.9 14.3 + - - +
214B GLY* 3.2 6.5 + - - +
216B GLU* 1.3 78.2 - - - +
218B PHE* 1.3 87.3 + - + +
219B SER* 3.4 7.4 + - - -
222B MET* 4.3 15.3 - - + +
----------------------------------------------------------
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Residues in contact with PHE 218 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204A MET* 3.8 24.0 - - + -
207A GLN* 3.6 24.2 - - + -
208A ILE* 3.6 43.1 - - + +
211A PHE* 3.7 28.8 - + + +
92B VAL* 3.9 21.3 - - + -
96B LEU* 4.1 9.6 - - + -
214B GLY 3.0 20.3 + - - +
215B ALA* 2.9 16.6 - - - +
217B MET* 1.3 95.0 - - + +
219B SER* 1.3 62.2 + - - +
222B MET* 4.0 17.3 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il