Contacts of the helix formed by residues 156 - 218 (chain D) in PDB entry 5C5B
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 156 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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308A ASN* 5.2 4.8 + - - +
310A MET* 5.6 4.0 - - - +
321A LEU* 5.6 8.2 - - - +
150D LEU* 6.4 0.2 - - + -
151D PRO* 5.3 9.9 - - + +
154D LYS 3.6 5.4 + - - +
155D GLU* 1.3 70.9 - - - +
157D GLU* 1.3 65.4 + - - +
158D LYS* 3.3 7.4 + - - +
159D VAL* 3.4 39.3 + - + +
160D LYS* 3.0 25.0 + - - +
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Residues in contact with GLU 157 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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305A GLN* 5.0 8.5 - - + +
306A GLY* 5.1 12.8 - - - -
307A GLY 5.5 1.8 - - - +
308A ASN* 4.2 18.9 - - - +
155D GLU* 3.6 10.5 + - + +
156D ASN* 1.3 72.5 + - - +
158D LYS* 1.3 57.7 + - - +
160D LYS* 3.9 4.1 - - - +
161D THR* 2.6 53.3 + - - -
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Residues in contact with LYS 158 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
305A GLN* 3.8 25.8 - - + +
308A ASN* 5.2 2.5 - - - +
310A MET* 4.3 23.1 - - + -
156D ASN* 3.3 6.2 + - - +
157D GLU* 1.3 75.6 - - - +
159D VAL* 1.3 62.6 + - + +
161D THR* 3.3 4.3 + - - -
162D GLU* 2.9 33.0 + - - +
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Residues in contact with VAL 159 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150D LEU* 4.2 13.9 - - + -
156D ASN* 3.4 36.7 + - + +
157D GLU 3.6 0.2 - - - -
158D LYS* 1.3 78.6 - - + +
160D LYS* 1.3 58.4 + - - +
162D GLU* 4.0 3.3 - - - +
163D VAL* 2.9 49.8 + - + +
401D GOL 5.5 9.0 - - - +
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Residues in contact with LYS 160 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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339C ARG* 6.0 2.7 - - - +
147D TYR* 4.7 2.1 - - - -
150D LEU* 3.9 27.5 - - + +
151D PRO* 6.4 0.7 - - + -
156D ASN 3.0 21.9 + - - +
157D GLU* 3.9 5.6 - - - +
159D VAL* 1.3 78.4 - - - +
161D THR* 1.3 57.3 + - - +
163D VAL* 3.9 1.4 - - - +
164D GLY* 2.9 25.8 + - - -
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Residues in contact with THR 161 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157D GLU* 2.6 36.6 + - - -
158D LYS* 3.9 3.4 - - - -
160D LYS* 1.3 76.5 - - - +
162D GLU* 1.3 58.4 + - - +
164D GLY* 3.4 2.4 + - - -
165D LYS* 2.9 27.6 + - + +
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Residues in contact with GLU 162 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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158D LYS 2.9 17.5 + - - +
159D VAL* 4.0 4.5 - - - +
161D THR* 1.3 75.2 - - - +
163D VAL* 1.3 60.1 - - + +
165D LYS* 3.1 8.3 + - - +
166D GLU* 2.9 41.7 + - - +
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Residues in contact with VAL 163 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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143D SER 4.8 0.4 - - - +
146D LYS* 4.3 22.4 - - + +
147D TYR* 3.6 43.1 - - + +
150D LEU* 4.2 11.2 - - + -
159D VAL* 2.9 35.6 + - + +
160D LYS 3.9 2.9 - - - +
162D GLU* 1.3 76.5 - - + +
164D GLY* 1.3 58.0 + - - +
166D GLU* 3.4 17.7 + - - +
167D VAL* 2.9 28.8 + - + +
401D GOL 5.6 2.2 - - - -
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Residues in contact with GLY 164 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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264C PRO* 3.5 28.0 - - - +
147D TYR* 4.1 8.9 - - - -
160D LYS 2.9 16.2 + - - -
161D THR* 3.7 4.0 - - - -
162D GLU 3.2 0.2 - - - -
163D VAL* 1.3 76.5 - - - +
165D LYS* 1.3 55.3 + - - +
167D VAL* 3.2 3.9 + - - +
168D ALA* 2.9 24.1 + - - +
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Residues in contact with LYS 165 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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161D THR* 2.9 14.7 + - + +
162D GLU* 3.1 11.8 + - - +
164D GLY* 1.3 72.4 - - - +
166D GLU* 1.3 66.2 + - + +
168D ALA* 3.1 9.8 + - - +
169D ALA* 2.9 22.6 + - - +
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Residues in contact with GLU 166 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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143D SER* 4.1 7.6 - - - +
146D LYS* 5.0 11.8 + - - +
162D GLU* 2.9 22.4 + - + +
163D VAL* 3.4 21.1 + - + +
165D LYS* 1.3 76.6 - - + +
167D VAL* 1.3 63.1 + - - +
169D ALA* 3.1 8.1 + - - +
170D ALA* 2.9 25.8 + - - +
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Residues in contact with VAL 167 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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264C PRO* 3.9 23.3 - - + -
358C GLU* 4.3 3.4 - - - +
140D HIS* 4.3 1.4 - - - +
143D SER* 3.1 25.1 - - - +
144D MET* 4.5 6.7 - - + +
147D TYR* 3.7 33.7 - - + -
163D VAL* 2.9 23.0 + - + +
164D GLY 3.2 8.0 + - - +
166D GLU* 1.3 71.9 - - + +
168D ALA* 1.3 63.8 + - - +
170D ALA* 3.9 1.0 - - - +
171D ARG* 2.9 45.9 + - - +
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Residues in contact with ALA 168 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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262C TYR* 3.3 37.9 + - + +
263C VAL* 4.2 7.9 - - + +
264C PRO* 4.2 4.3 - - + -
164D GLY 2.9 12.7 + - - +
165D LYS* 3.1 12.1 + - - +
167D VAL* 1.3 77.2 - - - +
169D ALA* 1.3 56.4 + - - +
171D ARG 3.4 0.2 + - - -
172D ARG* 2.9 30.2 + - - +
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Residues in contact with ALA 169 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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165D LYS 2.9 13.2 + - - +
166D GLU* 3.1 10.3 + - - +
168D ALA* 1.3 74.7 - - - +
170D ALA* 1.3 64.0 + - - +
172D ARG* 3.1 10.5 + - - +
173D LYS* 2.9 25.3 + - - +
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Residues in contact with ALA 170 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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136D ALA 4.5 2.1 - - - +
139D GLU* 4.3 11.4 - - + +
140D HIS* 3.8 31.3 - - + +
143D SER* 4.2 11.4 - - - +
166D GLU 2.9 16.0 + - - +
167D VAL 3.9 2.7 - - - +
169D ALA* 1.3 76.6 - - - +
171D ARG* 1.3 57.7 + - - +
173D LYS* 3.3 8.2 + - - +
174D GLN* 2.9 30.0 + - - +
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Residues in contact with ARG 171 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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261C LEU 4.2 9.9 + - - -
262C TYR* 3.7 37.7 + - + +
263C VAL 4.4 0.8 + - - -
264C PRO* 4.1 7.3 + - - +
358C GLU* 2.4 45.0 + - - -
13D LEU* 4.2 17.0 - - + +
140D HIS* 3.1 41.5 + - + +
144D MET* 3.7 8.5 - - - +
167D VAL* 2.9 24.6 + - - +
168D ALA 3.6 4.7 - - - +
170D ALA* 1.3 75.3 - - - +
172D ARG* 1.3 65.0 + - - +
174D GLN* 3.4 2.5 + - - +
175D HIS* 2.9 22.9 + - - +
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Residues in contact with ARG 172 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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255C GLU 5.1 2.8 + - - -
259C ASP* 2.3 48.9 + - - -
262C TYR* 3.4 45.0 - - + +
168D ALA 2.9 14.5 + - - +
169D ALA* 3.1 11.8 + - - +
171D ARG* 1.3 76.7 - - - +
173D LYS* 1.3 63.4 + - - +
175D HIS* 3.2 3.1 + - - +
176D LEU* 2.9 47.5 + - + +
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Residues in contact with LYS 173 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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136D ALA* 4.1 15.9 - - + -
139D GLU* 3.1 32.0 + - - +
169D ALA 2.9 14.0 + - - +
170D ALA* 3.3 10.5 + - - +
172D ARG* 1.3 76.9 - - - +
174D GLN* 1.3 57.0 + - - +
176D LEU* 3.4 9.5 + - + +
177D SER* 2.9 33.7 + - - -
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Residues in contact with GLN 174 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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314C ARG* 4.9 3.9 + - - +
12D ALA 5.6 0.6 + - - -
15D ASP* 3.6 23.2 + - - +
20D ARG* 3.5 25.3 - - - +
133D PHE* 4.5 8.9 - - + -
136D ALA* 3.7 17.4 - - + +
137D SER* 3.8 12.8 + - - +
140D HIS* 2.7 40.2 + - + +
141D ASP* 5.2 1.4 - - - +
170D ALA 2.9 16.4 + - - +
171D ARG 3.9 4.0 - - - +
173D LYS* 1.3 75.5 - - - +
175D HIS* 1.3 59.6 + - - +
177D SER* 2.9 19.0 + - - -
178D SER* 2.8 20.8 + - - +
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Residues in contact with HIS 175 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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254C LEU* 4.1 12.6 - - + +
255C GLU* 4.8 1.1 - - - -
258C SER* 3.3 26.0 - - - -
262C TYR* 2.7 28.7 + - + +
9D LEU 4.8 2.0 + - - -
12D ALA* 4.2 1.7 - - + +
13D LEU* 3.8 43.9 + - + +
171D ARG 2.9 17.8 + - - +
172D ARG 3.2 4.9 + - - +
174D GLN* 1.3 79.1 - - - +
176D LEU* 1.3 58.0 + - - +
178D SER* 2.5 23.4 + - - -
179D LEU* 2.9 50.0 + - + +
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Residues in contact with LEU 176 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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251C ILE* 6.0 2.0 - - + -
255C GLU* 4.3 24.5 - - + -
262C TYR* 4.7 8.5 - - - +
172D ARG* 2.9 45.4 + - + +
173D LYS* 4.0 6.5 - - + +
175D HIS* 1.3 72.3 - - - +
177D SER* 1.3 66.9 + - - +
179D LEU* 3.2 13.8 + - + +
180D GLN* 3.0 32.1 + - + +
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Residues in contact with SER 177 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129D LEU* 4.6 4.4 - - - +
132D LEU* 4.0 12.6 - - - -
133D PHE* 3.5 29.0 - - - +
136D ALA* 3.5 8.1 - - - +
173D LYS* 2.9 17.5 + - - -
174D GLN* 2.9 25.3 + - - -
176D LEU* 1.3 76.4 - - - +
178D SER* 1.3 56.3 + - - +
180D GLN* 3.4 7.1 + - - +
181D TYR* 2.9 29.1 + - - +
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Residues in contact with SER 178 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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12D ALA* 4.0 16.0 + - - +
15D ASP* 5.7 0.9 - - - -
133D PHE* 3.6 28.5 - - - -
174D GLN* 2.8 18.3 + - - +
175D HIS* 2.5 27.5 + - - -
177D SER* 1.3 75.1 + - - +
179D LEU* 1.3 57.3 + - - +
181D TYR* 4.3 1.8 - - - -
182D TYR* 2.9 50.8 + - - -
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Residues in contact with LEU 179 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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251C ILE* 3.7 42.8 - - + +
254C LEU* 4.2 7.6 - - + -
255C GLU 4.9 1.8 - - - +
9D LEU* 3.6 49.0 - - + +
12D ALA* 4.0 9.6 - - + -
175D HIS* 2.9 46.2 + - + +
176D LEU* 3.5 16.4 - - + +
178D SER* 1.3 75.9 + - - +
180D GLN* 1.3 57.9 + - - +
183D CYS* 2.9 31.4 + - - +
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Residues in contact with GLN 180 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
251C ILE* 3.7 32.2 - - - +
129D LEU* 3.8 28.5 - - + +
176D LEU* 3.0 24.3 + - + +
177D SER* 3.7 7.2 - - - +
179D LEU* 1.3 76.2 - - - +
181D TYR* 1.3 57.3 - - - +
183D CYS* 3.7 4.5 - - - +
184D ALA* 2.9 29.5 + - - +
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Residues in contact with TYR 181 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23D LEU* 4.0 16.8 - - + -
27D GLU* 3.1 40.8 + - - +
126D VAL* 3.8 12.6 - - + +
129D LEU* 4.2 15.0 - - + +
130D LYS* 3.2 45.9 - - + +
133D PHE* 3.7 28.5 - + + -
177D SER 2.9 17.9 + - - +
178D SER* 3.6 4.9 - - - +
179D LEU 3.3 0.2 - - - -
180D GLN* 1.3 77.0 - - - +
182D TYR* 1.3 59.1 + + + +
184D ALA* 3.1 4.8 + - + +
185D LEU* 2.9 54.3 + - + +
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Residues in contact with TYR 182 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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7D LEU* 4.0 25.3 - - + +
8D LEU 4.2 13.0 - - - -
9D LEU* 3.6 17.3 - - + -
12D ALA* 3.6 33.2 - - + -
15D ASP* 4.1 12.6 + - - -
19D THR* 3.6 26.7 - - + +
20D ARG* 4.7 0.7 + - - -
23D LEU* 3.6 46.3 - - + +
133D PHE* 4.4 4.4 - + - -
178D SER* 2.9 33.9 + - - +
181D TYR* 1.3 77.7 - + + +
183D CYS* 1.3 66.6 + - - +
185D LEU* 3.2 2.3 + - - +
186D ASN* 2.9 31.6 + - - +
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Residues in contact with CYS 183 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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244C ILE* 5.1 12.3 - - - -
247C MET* 3.8 44.4 - - - +
248C GLN* 4.8 3.6 - - - -
251C ILE* 3.9 18.8 - - + -
9D LEU* 4.0 2.8 - - + +
179D LEU 2.9 18.1 + - - +
180D GLN* 3.7 5.8 - - - +
182D TYR* 1.3 76.4 - - - +
184D ALA* 1.3 55.5 + - - +
186D ASN* 3.5 1.6 + - - +
187D ALA* 2.9 30.8 + - - +
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Residues in contact with ALA 184 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125D GLU* 5.7 3.8 - - - +
126D VAL* 4.3 18.5 - - + +
129D LEU* 3.6 23.3 - - + -
180D GLN 2.9 15.4 + - - +
181D TYR* 3.3 13.7 - - + +
183D CYS* 1.3 77.8 - - - +
185D LEU* 1.3 57.8 + - - +
187D ALA* 3.3 7.9 - - - +
188D LEU* 2.9 27.1 + - - +
191D ARG* 5.2 2.4 + - - +
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Residues in contact with LEU 185 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7D LEU* 3.9 6.7 - - + -
23D LEU* 3.6 31.4 - - + -
26D PHE* 3.8 31.9 - - + +
27D GLU* 4.7 2.0 - - + -
30D ALA* 4.8 9.0 - - + -
126D VAL* 3.6 20.9 - - + -
181D TYR* 2.9 48.8 + - + +
182D TYR 3.8 3.6 - - - +
184D ALA* 1.3 71.7 - - - +
186D ASN* 1.3 66.5 + - - +
187D ALA 3.1 1.3 - - - -
188D LEU* 2.9 25.2 + - + +
189D GLN* 3.0 20.8 + - - +
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Residues in contact with ASN 186 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
240C MET* 4.4 2.0 - - - -
247C MET* 3.4 35.0 - - + -
6D LYS* 3.8 16.2 - - + +
7D LEU* 3.0 50.1 + - - +
9D LEU* 4.9 1.6 - - - +
26D PHE* 3.9 6.6 - - - -
182D TYR* 2.9 25.2 + - - +
185D LEU* 1.3 76.6 - - - +
187D ALA* 1.3 58.2 + - - +
189D GLN* 3.5 10.2 + - - +
190D TYR* 3.1 30.6 - - + -
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Residues in contact with ALA 187 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
240C MET* 3.2 25.6 - - + +
244C ILE* 4.6 7.0 - - + -
247C MET* 4.4 0.6 - - + +
183D CYS* 2.9 19.8 + - - +
184D ALA* 3.3 8.5 - - - +
186D ASN* 1.3 75.8 - - - +
188D LEU* 1.3 64.4 + - - +
189D GLN 3.2 0.5 + - - -
190D TYR 3.4 2.8 + - - -
191D ARG* 3.0 49.5 + - - +
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Residues in contact with LEU 188 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30D ALA* 4.1 25.1 - - + -
33D LEU* 3.8 22.9 - - + -
118D PHE* 4.1 15.3 - - + -
122D ASP* 5.0 5.8 - - + -
123D LEU* 3.6 26.2 - - + -
126D VAL* 4.1 22.7 - - + -
184D ALA 2.9 15.4 + - - +
185D LEU* 3.3 15.7 - - + +
187D ALA* 1.3 76.6 - - - +
189D GLN* 1.3 65.4 + - - +
191D ARG* 4.1 7.4 - - + +
192D LYS* 2.9 36.2 + - + +
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Residues in contact with GLN 189 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5D ASP 5.5 2.7 - - - +
26D PHE* 3.5 44.4 + - + +
29D ASP* 4.2 19.8 + - - +
30D ALA* 5.9 0.8 - - - +
185D LEU* 3.0 16.5 + - - +
186D ASN* 3.6 11.9 - - - +
187D ALA 3.1 0.2 - - - -
188D LEU* 1.3 87.3 - - - +
190D TYR* 1.3 66.5 + - + +
192D LYS* 3.6 17.2 - - - +
193D GLN* 3.8 11.7 + - - +
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Residues in contact with TYR 190 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
236C VAL* 3.7 16.3 - - + +
239C GLU* 5.1 13.2 - - + -
240C MET* 3.0 44.9 - - + -
243C ASP* 3.2 11.4 + - - -
6D LYS* 3.1 38.7 + - + +
186D ASN* 3.1 29.8 - - + -
187D ALA 3.4 2.2 + - - +
189D GLN* 1.3 78.2 - - + +
191D ARG* 1.3 62.0 + - + +
192D LYS 3.1 2.0 - - - -
193D GLN* 2.8 50.6 + - - +
194D MET* 3.1 6.6 + - - +
----------------------------------------------------------
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Residues in contact with ARG 191 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
240C MET* 5.7 1.6 - - + -
244C ILE* 4.4 17.8 - - + +
118D PHE* 4.4 11.4 - - + -
122D ASP* 4.0 32.6 + - - +
125D GLU* 4.2 15.0 + - - -
184D ALA* 5.2 2.8 + - - +
187D ALA* 3.0 42.2 + - - +
188D LEU* 3.8 9.2 - - - +
190D TYR* 1.3 78.5 - - + +
192D LYS* 1.3 57.0 + - - +
194D MET* 3.9 17.4 - - + +
195D ALA* 2.9 33.4 + - - +
----------------------------------------------------------
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Residues in contact with LYS 192 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82C MET* 3.8 5.6 - - - +
29D ASP* 6.0 2.0 - - - +
33D LEU* 3.5 38.1 - - + -
118D PHE* 4.7 2.0 - - - -
188D LEU* 2.9 30.1 + - + +
189D GLN* 3.6 13.5 - - - +
190D TYR 3.1 0.2 - - - -
191D ARG* 1.3 76.1 - - - +
193D GLN* 1.3 66.5 + - + +
195D ALA* 4.0 2.9 - - - +
196D MET* 3.3 40.8 + - + +
----------------------------------------------------------
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Residues in contact with GLN 193 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81C VAL* 4.3 17.2 - - - +
82C MET* 4.0 24.5 - - + +
236C VAL* 3.6 28.4 - - + +
189D GLN 3.8 10.4 + - - +
190D TYR* 2.8 51.0 + - - +
192D LYS* 1.3 79.2 - - + +
194D MET* 1.3 60.3 + - - +
196D MET* 3.6 0.7 + - - -
197D MET* 3.3 32.8 + - + +
----------------------------------------------------------
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Residues in contact with MET 194 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
233C VAL* 4.6 16.0 - - + +
236C VAL* 3.5 33.2 - - + +
237C ARG* 4.0 24.5 - - + +
240C MET* 5.4 5.4 - - - -
190D TYR 3.1 6.0 + - - +
191D ARG* 3.6 18.1 + - + +
193D GLN* 1.3 78.6 - - - +
195D ALA* 1.3 62.8 + - - +
197D MET* 3.2 7.0 + - - +
198D GLU* 3.1 32.8 + - + +
----------------------------------------------------------
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Residues in contact with ALA 195 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114D PRO* 5.0 4.8 - - - +
115D ILE* 4.7 6.8 + - - +
118D PHE* 3.5 43.5 - - + -
191D ARG 2.9 20.6 + - - +
192D LYS* 4.0 3.4 - - - +
193D GLN 3.4 0.2 - - - -
194D MET* 1.3 77.6 - - - +
196D MET* 1.3 60.7 + - + +
198D GLU* 4.3 4.3 - - - +
199D PRO* 3.0 21.8 - - - +
----------------------------------------------------------
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Residues in contact with MET 196 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82C MET* 3.6 30.7 - - + -
86C LEU* 5.5 4.0 - - + -
33D LEU* 3.6 30.5 - - + -
36D TYR* 3.7 33.7 - - + -
37D THR* 5.0 8.3 - - + -
40D LEU* 3.9 21.5 - - + +
115D ILE* 6.1 1.1 - - + -
118D PHE* 5.7 0.4 - - + -
192D LYS* 3.3 29.4 + - + +
194D MET 3.2 0.4 - - - -
195D ALA* 1.3 81.5 - - + +
197D MET* 1.3 62.2 + - - +
199D PRO* 3.4 11.4 - - - +
200D MET* 3.2 23.9 + - - +
----------------------------------------------------------
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Residues in contact with MET 197 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81C VAL* 6.1 2.9 - - + -
82C MET* 5.4 8.7 - - + -
85C THR* 4.4 18.2 - - - +
86C LEU* 6.0 0.4 - - + -
229C ILE* 3.9 21.7 - - + +
232C SER* 3.9 21.3 - - - -
233C VAL* 3.6 34.5 - - + +
236C VAL* 4.0 16.8 - - + -
193D GLN* 3.3 28.5 - - + +
194D MET* 3.2 7.4 + - - +
196D MET* 1.3 80.0 - - + +
198D GLU* 1.3 63.9 + - - +
199D PRO 3.4 0.7 - - - -
200D MET* 3.1 17.2 + - - +
201D ILE* 3.0 24.4 + - - +
----------------------------------------------------------
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Residues in contact with GLU 198 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
233C VAL* 5.3 9.2 - - + +
110D THR* 3.4 9.7 - - - +
114D PRO* 4.3 19.9 - - + +
194D MET* 3.1 19.8 + - + +
195D ALA* 4.3 2.7 - - - +
197D MET* 1.3 74.4 - - - +
199D PRO* 1.3 70.8 - - + +
201D ILE* 3.0 39.3 - - + +
202D GLY* 3.0 7.3 + - - -
----------------------------------------------------------
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Residues in contact with PRO 199 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89C PHE* 5.3 1.6 - - - -
40D LEU* 5.8 0.7 - - + -
44D MET* 4.0 12.6 - - + -
110D THR 3.5 11.0 - - - +
111D MET* 3.5 28.6 - - + +
114D PRO* 4.4 3.8 - - + -
115D ILE* 3.6 23.6 - - + -
195D ALA 3.0 24.5 - - - +
196D MET* 3.4 15.0 - - - +
198D GLU* 1.3 92.7 - - + +
200D MET* 1.3 55.6 + - + +
203D PHE* 2.9 33.4 + - - +
----------------------------------------------------------
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Residues in contact with MET 200 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85C THR* 4.6 6.1 - - - +
86C LEU* 4.4 19.5 - - - -
89C PHE* 3.6 50.1 - - + -
225C PHE* 3.4 23.6 - - + -
229C ILE* 4.6 5.2 - - + -
44D MET* 6.4 0.2 - - + -
196D MET 3.2 21.8 - - - +
197D MET* 3.1 21.0 + - - +
199D PRO* 1.3 78.9 - - + +
201D ILE* 1.3 56.6 + - - +
203D PHE* 3.7 1.6 - - - +
204D ALA* 2.9 30.3 + - - +
----------------------------------------------------------
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Residues in contact with ILE 201 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
225C PHE* 4.8 0.4 - - + -
226C LEU* 4.1 21.1 - - + +
229C ILE* 3.5 33.0 - - + -
230C GLY* 4.7 9.0 - - - +
233C VAL* 4.9 15.7 - - + -
197D MET 3.0 8.9 + - - +
198D GLU* 3.0 46.7 - - + +
200D MET* 1.3 73.9 - - - +
202D GLY* 1.3 66.0 + - - +
204D ALA* 3.3 1.3 + - - +
205D HIS* 2.9 38.0 + - + +
----------------------------------------------------------
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Residues in contact with GLY 202 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106D GLN* 4.5 2.5 + - - +
110D THR* 3.3 44.2 + - - -
111D MET* 5.2 0.2 - - - -
198D GLU* 3.0 12.4 + - - -
201D ILE* 1.3 79.8 - - - +
203D PHE* 1.3 55.0 + - - +
205D HIS* 3.4 6.7 + - - +
206D GLY* 2.9 25.8 + - - -
----------------------------------------------------------
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Residues in contact with PHE 203 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58C THR* 5.4 4.0 - - + -
89C PHE* 3.5 22.7 - + + -
92C VAL* 5.4 2.2 - - + -
93C ILE* 3.7 31.4 - - + -
96C LEU* 3.5 28.3 - - + -
222C LEU* 5.0 8.1 - - + -
47D VAL* 5.1 11.4 - - + -
107D LEU* 3.8 17.8 - - + +
111D MET* 3.6 31.2 - - - +
199D PRO 2.9 19.6 + - - +
200D MET* 3.7 2.9 - - - +
202D GLY* 1.3 75.9 - - - +
204D ALA* 1.3 59.8 + - - +
206D GLY* 3.4 1.4 + - - -
207D GLN* 2.9 58.8 + - + +
----------------------------------------------------------
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Residues in contact with ALA 204 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
222C LEU* 3.8 25.1 - - + +
225C PHE* 3.9 11.4 - - + -
226C LEU* 3.7 25.6 - - + -
200D MET 2.9 18.1 + - - +
201D ILE 3.3 4.0 + - - +
203D PHE* 1.3 78.2 - - + +
205D HIS* 1.3 58.4 + - - +
207D GLN* 3.3 2.8 + - - +
208D ILE* 2.9 34.3 + - - +
----------------------------------------------------------
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Residues in contact with HIS 205 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
226C LEU* 3.5 33.4 - - + +
106D GLN* 4.9 7.0 - - - +
201D ILE* 2.9 34.0 + - + +
202D GLY* 3.7 6.5 - - - +
204D ALA* 1.3 73.1 - - - +
206D GLY* 1.3 65.2 + - - +
208D ILE* 3.1 15.5 - - + +
209D ASN* 3.0 36.4 + - - +
----------------------------------------------------------
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Residues in contact with GLY 206 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103D LEU* 3.5 20.0 - - - +
106D GLN* 4.1 22.5 - - - +
107D LEU* 5.8 0.4 - - - -
202D GLY 2.9 15.3 + - - -
203D PHE* 3.8 3.6 - - - -
205D HIS* 1.3 76.7 - - - +
207D GLN* 1.3 56.4 + - - +
209D ASN* 3.4 4.1 + - - +
210D PHE* 2.9 30.7 + - - +
----------------------------------------------------------
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Residues in contact with GLN 207 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96C LEU* 3.9 16.3 - - + +
100C HIS* 5.1 3.3 + - - -
218C LEU* 5.4 0.4 - - + -
222C LEU* 3.7 18.2 - - + -
51D GLN* 4.8 5.1 - - - +
103D LEU* 3.6 33.9 - - - +
107D LEU* 4.6 2.8 - - - +
203D PHE* 2.9 55.9 + - + +
204D ALA* 3.7 4.9 - - - +
205D HIS 3.2 0.2 - - - -
206D GLY* 1.3 74.1 - - - +
208D ILE* 1.3 60.2 + - - +
210D PHE* 3.4 1.4 + - - +
211D PHE* 2.9 62.6 + - + -
----------------------------------------------------------
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Residues in contact with ILE 208 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
219C ASN* 4.2 20.9 - - + +
222C LEU* 3.5 39.5 - - + -
223C GLU* 4.9 1.1 - - + +
226C LEU* 4.6 9.9 - - + -
204D ALA 2.9 15.7 + - - +
205D HIS* 3.1 35.2 - - - +
207D GLN* 1.3 76.3 - - - +
209D ASN* 1.3 80.2 + - - +
211D PHE* 4.3 3.1 - - - +
212D LYS* 2.9 35.2 + - + +
----------------------------------------------------------
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Residues in contact with ASN 209 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106D GLN* 5.1 10.0 - - + +
205D HIS* 3.0 28.6 + - - +
206D GLY* 3.8 6.1 - - - +
208D ILE* 1.3 90.9 - - - +
210D PHE* 1.3 56.8 + - - +
212D LYS* 4.0 5.3 - - - +
213D LYS* 3.0 46.3 + - - +
----------------------------------------------------------
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Residues in contact with PHE 210 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100C HIS* 5.4 4.9 - + - -
210C PHE* 4.0 17.0 - + - -
211C PHE* 3.5 34.4 - + - -
51D GLN* 4.9 0.2 - - - -
99D LEU* 3.9 30.6 - - + +
100D HIS* 3.3 49.4 - + - -
103D LEU* 3.6 30.1 - - + -
206D GLY 2.9 18.0 + - - +
207D GLN* 3.7 3.1 - - - +
209D ASN* 1.3 78.1 - - - +
211D PHE* 1.3 77.8 + + - +
213D LYS* 5.2 1.6 - - - +
214D GLY* 2.9 26.5 + - - -
----------------------------------------------------------
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Residues in contact with PHE 211 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96C LEU* 3.5 16.2 - - + -
99C CYS* 4.8 2.7 - - + -
100C HIS* 5.0 0.9 - - - -
210C PHE* 3.4 43.7 - + - -
211C PHE* 3.9 21.0 - + - +
214C GLY* 3.7 35.9 - - - +
215C SER* 4.5 3.7 - - - -
218C LEU* 3.5 22.7 - - + -
219C ASN* 5.7 6.5 - - + -
222C LEU* 5.5 0.9 - - + -
207D GLN* 2.9 49.0 + - - +
208D ILE* 4.3 3.8 - - - +
210D PHE* 1.3 83.5 - + - +
212D LYS* 1.3 60.9 + - - +
215D ALA* 2.9 28.6 + - - +
----------------------------------------------------------
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Residues in contact with LYS 212 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
219C ASN* 6.0 7.4 - - + +
208D ILE* 2.9 23.9 + - + +
209D ASN* 4.0 5.8 - - - +
211D PHE* 1.3 75.8 - - - +
213D LYS* 1.3 64.1 + - + +
215D ALA* 3.2 7.9 + - + +
216D GLU* 2.9 25.8 + - - +
----------------------------------------------------------
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Residues in contact with LYS 213 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98D LEU 6.3 0.2 - - - -
99D LEU* 3.6 29.8 - - + +
102D GLU* 4.9 17.4 - - - +
209D ASN* 3.0 27.7 + - + +
210D PHE* 5.8 0.4 - - - +
212D LYS* 1.3 79.4 - - + +
214D GLY* 1.3 56.8 + - - +
216D GLU* 3.3 9.1 + - + +
217D MET* 2.9 30.1 + - - +
----------------------------------------------------------
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Residues in contact with GLY 214 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
211C PHE* 3.5 26.5 - - - +
99D LEU* 3.5 12.9 - - - +
210D PHE 2.9 20.5 + - - -
213D LYS* 1.3 74.7 - - - +
215D ALA* 1.3 58.9 + - - +
217D MET* 3.1 3.9 + - - +
218D PHE* 2.9 32.1 + - - -
----------------------------------------------------------
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Residues in contact with ALA 215 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
211C PHE* 3.9 21.5 - - - +
212C LYS* 5.9 0.2 - - - -
215C SER* 4.3 13.9 - - - +
211D PHE 2.9 19.4 + - - +
212D LYS* 3.2 8.3 + - + +
214D GLY* 1.3 74.6 - - - +
216D GLU* 1.3 59.9 + - - +
218D PHE 3.0 23.0 - - - +
219D SER* 4.0 3.5 + - - -
----------------------------------------------------------
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Residues in contact with GLU 216 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
212D LYS* 2.9 13.8 + - + +
213D LYS* 3.5 13.2 - - + +
214D GLY 3.2 0.2 - - - -
215D ALA* 1.3 78.0 - - - +
217D MET* 1.3 63.2 + - - +
219D SER* 3.9 14.0 + - - -
----------------------------------------------------------
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Residues in contact with MET 217 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92D VAL* 3.5 34.5 - - + +
95D GLU* 3.5 39.9 - - + +
96D LEU* 3.7 11.9 - - + +
99D LEU* 3.9 18.4 - - + -
213D LYS 2.9 14.1 + - - +
214D GLY* 3.1 9.8 + - - +
216D GLU* 1.3 80.8 - - - +
218D PHE* 1.3 86.3 + - + +
219D SER* 3.3 6.8 + - - -
222D MET* 4.0 21.0 - - + +
----------------------------------------------------------
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Residues in contact with PHE 218 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204C MET* 3.8 25.8 - - + -
207C GLN* 3.5 28.9 - - + +
208C ILE* 3.5 44.9 - - + +
211C PHE* 3.8 23.2 - + + +
92D VAL* 3.9 13.5 - - + -
96D LEU* 4.2 11.9 - - + -
214D GLY 2.9 18.9 + - - +
215D ALA* 3.0 16.7 - - - +
217D MET* 1.3 102.1 - - + +
219D SER* 1.3 62.4 + - - +
222D MET* 3.8 17.5 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il