Contacts of the helix formed by residues 16 - 71 (chain D) in PDB entry 5C5B
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 16 (chain D).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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283C TYR* 3.8 2.9 - - - -
301C PHE* 4.2 21.8 - - - -
11D GLU* 5.4 0.5 + - - -
14D GLN* 3.4 17.3 + - - +
15D ASP* 1.3 79.4 - - - +
17D PRO* 1.3 76.2 - - - +
18D GLN* 4.0 8.2 + - - +
19D THR* 3.0 27.7 + - - -
20D ARG* 3.0 19.6 + - - +
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Residues in contact with PRO 17 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
283C TYR* 3.3 15.0 - - - +
301C PHE* 3.5 20.2 - - + -
312C GLN* 3.5 51.1 - - + +
313C ALA 3.8 9.6 - - - +
314C ARG* 3.8 13.9 - - + -
315C GLY* 4.5 2.8 + - - +
316C ASP 5.0 0.9 - - - +
16D SER* 1.3 87.4 - - - +
18D GLN* 1.3 55.4 + - - +
20D ARG* 3.4 11.7 + - + +
21D SER* 2.9 30.9 + - - -
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Residues in contact with GLN 18 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
312C GLN* 4.7 8.2 + - - +
16D SER* 3.1 8.4 + - - +
17D PRO* 1.3 76.7 - - - +
19D THR* 1.3 65.1 + - - +
21D SER* 3.0 18.4 + - - -
22D LEU* 3.0 23.0 + - + +
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Residues in contact with THR 19 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7D LEU* 4.8 5.1 - - + +
8D LEU 5.5 1.3 - - - +
11D GLU* 3.8 32.6 + - + +
12D ALA* 5.0 0.2 - - - -
15D ASP* 4.7 5.8 - - - +
16D SER* 3.0 27.8 + - - -
18D GLN* 1.3 77.4 - - - +
20D ARG* 1.3 58.7 + - - +
21D SER 3.3 0.2 + - - -
22D LEU* 3.3 9.7 + - - +
23D LEU* 2.9 27.8 + - - +
182D TYR* 3.6 33.0 - - + +
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Residues in contact with ARG 20 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314C ARG* 3.6 38.8 - - + +
315C GLY* 4.8 7.4 - - - +
15D ASP* 3.0 36.8 + - - +
16D SER 3.0 11.9 + - - +
17D PRO* 3.5 12.3 - - + +
18D GLN 3.2 0.2 - - - -
19D THR* 1.3 76.5 - - - +
21D SER* 1.3 58.1 + - - +
23D LEU* 3.6 18.2 - - - +
24D SER* 2.9 28.8 + - - -
133D PHE* 3.3 31.6 - - - -
137D SER* 3.5 22.2 + - - -
174D GLN* 3.5 8.9 - - - +
182D TYR* 4.7 1.3 + - - -
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Residues in contact with SER 21 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
312C GLN* 4.7 2.6 + - - -
316C ASP 4.2 13.3 + - - -
317C VAL* 5.2 4.3 + - - -
17D PRO 2.9 19.6 + - - -
18D GLN* 3.2 13.4 - - - -
20D ARG* 1.3 73.8 - - - +
22D LEU* 1.3 69.3 + - - +
24D SER* 2.4 26.2 + - - -
25D VAL* 3.0 12.5 + - - +
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Residues in contact with LEU 22 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5D ASP* 6.2 3.4 - - + -
6D LYS 5.4 7.0 - - - +
7D LEU* 4.0 16.4 - - + -
8D LEU* 5.6 8.1 - - + -
18D GLN* 3.0 19.9 + - + +
19D THR* 3.9 9.0 - - - +
21D SER* 1.3 76.8 - - - +
23D LEU* 1.3 62.7 + - - +
25D VAL* 3.2 13.5 + - + +
26D PHE* 3.0 33.2 + - + -
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Residues in contact with LEU 23 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7D LEU* 3.9 11.6 - - + +
19D THR 2.9 18.2 + - - +
20D ARG* 3.6 15.7 - - - +
22D LEU* 1.3 77.7 - - - +
24D SER* 1.3 55.8 + - - +
26D PHE* 3.2 4.3 + - - +
27D GLU* 2.9 43.4 + - - +
133D PHE* 3.5 35.4 - - + -
181D TYR* 4.0 7.9 - - + -
182D TYR* 3.6 35.7 - - + +
185D LEU* 3.6 26.9 - - + -
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Residues in contact with SER 24 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20D ARG 2.9 16.0 + - - -
21D SER* 2.4 24.1 + - - -
23D LEU* 1.3 73.1 - - - +
25D VAL* 1.3 68.9 + - - +
27D GLU* 3.3 15.7 + - - +
28D GLU* 2.9 23.4 + - - +
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Residues in contact with VAL 25 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21D SER 3.0 14.4 + - - +
22D LEU* 3.3 17.3 - - + +
24D SER* 1.3 83.7 + - - +
26D PHE* 1.3 69.4 + - + +
28D GLU* 3.1 15.3 + - - +
29D ASP* 3.0 26.1 + - + +
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Residues in contact with PHE 26 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5D ASP* 3.6 27.1 - - + -
6D LYS 4.4 2.2 - - - -
7D LEU* 3.8 33.0 - - + -
22D LEU* 3.0 28.4 + - + +
23D LEU* 3.2 9.6 + - - +
25D VAL* 1.3 83.8 - - + +
27D GLU* 1.3 57.3 + - - +
29D ASP* 3.4 4.4 + - - +
30D ALA* 2.9 28.9 + - - +
185D LEU* 3.8 33.3 - - + +
186D ASN* 3.9 12.6 - - - -
189D GLN* 3.5 42.6 + - + +
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Residues in contact with GLU 27 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23D LEU* 2.9 31.8 + - + +
24D SER* 3.6 16.6 - - - +
26D PHE* 1.3 75.9 - - - +
28D GLU* 1.3 63.1 + - - +
30D ALA* 3.2 9.4 - - - +
31D GLY* 3.0 19.1 + - - -
130D LYS* 3.8 22.6 + - - +
133D PHE* 4.9 3.8 - - - -
181D TYR* 3.1 43.8 + - + +
185D LEU* 4.7 1.3 - - + -
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Residues in contact with GLU 28 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24D SER 2.9 13.6 + - - +
25D VAL* 3.1 17.0 + - - +
27D GLU* 1.3 76.4 - - - +
29D ASP* 1.3 61.0 + - - +
31D GLY* 3.1 4.2 + - - -
32D THR* 3.0 30.5 + - - +
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Residues in contact with ASP 29 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25D VAL* 3.0 18.5 + - + +
26D PHE* 4.2 3.1 - - - +
28D GLU* 1.3 75.9 - - + +
30D ALA* 1.3 60.4 + - - +
32D THR* 3.8 16.8 - - - +
33D LEU* 3.0 27.3 + - - +
189D GLN* 4.2 20.8 + - - +
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Residues in contact with ALA 30 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26D PHE 2.9 15.9 + - - +
27D GLU* 3.2 14.4 - - - +
29D ASP* 1.3 79.0 + - - +
31D GLY* 1.3 57.6 + - - +
33D LEU* 3.3 8.9 + - - +
34D THR* 2.9 32.7 + - - +
123D LEU* 5.3 0.8 - - + +
126D VAL* 5.0 6.7 - - + -
181D TYR* 5.9 0.7 - - - +
185D LEU* 4.8 7.6 - - + -
188D LEU* 4.1 23.6 - - + -
189D GLN* 5.9 1.1 - - - +
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Residues in contact with GLY 31 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27D GLU 3.0 13.3 + - - -
28D GLU* 3.1 5.1 + - - -
30D ALA* 1.3 74.3 - - - +
32D THR* 1.3 65.4 + - - +
34D THR* 3.1 10.2 + - - -
35D ASP* 3.0 29.1 + - - +
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Residues in contact with THR 32 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68C TYR* 4.8 12.7 - - + -
28D GLU* 3.0 21.8 + - - +
29D ASP* 3.7 21.0 - - - +
31D GLY* 1.3 73.4 - - - +
33D LEU* 1.3 65.4 + - - +
35D ASP* 3.2 9.8 + - - +
36D TYR* 3.0 21.3 + - + +
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Residues in contact with LEU 33 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29D ASP* 3.0 21.8 + - - +
30D ALA* 3.4 3.4 - - - +
32D THR* 1.3 78.5 - - - +
34D THR* 1.3 61.5 + - - +
36D TYR* 3.2 7.6 + - + +
37D THR* 2.9 38.7 + - + +
118D PHE* 3.9 5.2 - - + -
123D LEU* 3.6 27.4 - - + -
188D LEU* 3.8 19.5 - - + -
192D LYS* 3.5 35.4 - - + -
196D MET* 3.6 24.5 - - + -
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Residues in contact with THR 34 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30D ALA* 2.9 16.8 + - - +
31D GLY* 3.1 11.4 + - - -
33D LEU* 1.3 75.3 - - - +
35D ASP* 1.3 66.2 + - - +
37D THR* 2.4 23.1 + - - -
38D ASN* 2.9 27.9 + - - +
119D ARG* 5.4 3.4 - - + +
123D LEU* 3.7 28.3 - - + +
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Residues in contact with ASP 35 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68C TYR* 5.2 5.2 - - + +
31D GLY 3.0 17.9 + - - +
32D THR* 3.6 10.2 - - - +
34D THR* 1.3 80.5 - - - +
36D TYR* 1.3 63.0 + - - +
38D ASN* 3.0 16.8 + - - +
39D GLN* 3.0 32.9 + - + +
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Residues in contact with TYR 36 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64C LEU* 3.5 33.7 - - + -
65C LEU* 3.6 36.2 + - - +
68C TYR* 3.1 51.6 - + + +
86C LEU* 4.7 11.9 - - + +
32D THR* 3.0 11.5 + - + +
33D LEU* 3.7 10.1 - - + +
35D ASP* 1.3 76.5 - - - +
37D THR* 1.3 57.6 + - - +
39D GLN* 3.3 2.8 + - + +
40D LEU* 2.9 41.5 + - + +
196D MET* 3.7 33.9 - - + -
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Residues in contact with THR 37 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33D LEU* 2.9 29.4 + - + +
34D THR* 2.4 27.2 + - - -
36D TYR* 1.3 76.3 - - + +
38D ASN* 1.3 61.5 + - - +
40D LEU* 3.9 6.6 - - + +
41D LEU* 2.9 31.2 + - - +
115D ILE* 4.1 11.5 - - + +
118D PHE* 3.5 34.3 - - + -
119D ARG* 4.7 6.8 - - - +
123D LEU* 3.6 10.1 - - + +
196D MET* 5.0 10.8 - - + -
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Residues in contact with ASN 38 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34D THR* 2.9 31.3 + - - +
35D ASP* 3.3 18.6 + - - +
37D THR* 1.3 78.3 + - - +
39D GLN* 1.3 64.1 + - + +
41D LEU* 3.2 8.0 + - - +
42D GLN* 3.0 32.0 + - - +
119D ARG* 2.7 50.0 + - - +
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Residues in contact with GLN 39 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64C LEU* 3.6 32.5 - - + +
67C GLU* 6.0 0.8 - - - +
68C TYR* 2.9 34.8 + - - -
35D ASP* 3.0 18.8 + - - +
36D TYR* 3.7 6.5 - - - +
38D ASN* 1.3 75.8 - - + +
40D LEU* 1.3 59.3 + - - +
42D GLN* 3.1 19.9 + - - +
43D ALA* 2.9 27.2 + - - +
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Residues in contact with LEU 40 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61C THR* 5.7 4.0 - - + +
64C LEU* 3.5 20.6 - - + +
65C LEU* 4.4 14.6 - - + -
36D TYR* 2.9 39.3 + - + +
37D THR* 3.9 5.6 - - - +
39D GLN* 1.3 77.2 - - - +
41D LEU* 1.3 57.5 + - - +
43D ALA* 3.2 6.1 + - + +
44D MET* 2.9 51.9 + - + +
115D ILE* 4.0 23.8 - - + -
196D MET* 3.9 31.2 - - + +
199D PRO* 5.8 0.4 - - + -
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Residues in contact with LEU 41 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37D THR 2.9 20.7 + - - +
38D ASN 3.4 4.3 - - - +
40D LEU* 1.3 75.6 - - - +
42D GLN* 1.3 60.6 + - + +
44D MET* 3.3 4.1 + - - +
45D GLN* 2.9 51.6 + - + +
112D VAL* 4.2 11.0 - - + +
115D ILE* 4.1 18.1 - - + +
116D ILE* 3.6 34.1 - - + +
119D ARG* 3.7 36.3 - - + +
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Residues in contact with GLN 42 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38D ASN* 3.0 23.1 + - - +
39D GLN* 3.1 21.2 + - - +
41D LEU* 1.3 79.6 - - + +
43D ALA* 1.3 62.7 + - - +
45D GLN* 3.2 8.5 + - - +
46D ARG* 2.9 24.2 + - - +
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Residues in contact with ALA 43 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57C ALA 5.3 0.2 - - - +
60C LEU* 5.5 1.8 - - + -
61C THR* 3.5 27.8 - - + +
64C LEU* 4.1 17.0 - - + -
39D GLN 2.9 11.7 + - - +
40D LEU* 3.4 11.2 - - + +
42D GLN* 1.3 76.3 - - - +
44D MET* 1.3 57.1 + - - +
46D ARG* 3.1 10.9 + - - +
47D VAL* 2.9 29.8 + - - +
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Residues in contact with MET 44 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61C THR* 5.0 9.9 - - - -
89C PHE* 5.2 16.2 - - + -
40D LEU* 2.9 40.8 + - + +
41D LEU* 3.6 5.6 - - - +
43D ALA* 1.3 75.4 - - - +
45D GLN* 1.3 57.3 + - - +
47D VAL* 3.0 7.1 + - - +
48D TYR* 2.9 30.0 + - - +
111D MET* 3.6 37.9 - - + +
112D VAL* 3.9 23.2 - - + +
115D ILE* 3.5 28.9 - - + -
199D PRO* 4.0 10.1 - - + -
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Residues in contact with GLN 45 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41D LEU* 2.9 41.8 + - + +
42D GLN* 3.5 8.5 - - - +
44D MET* 1.3 75.3 - - - +
46D ARG* 1.3 56.3 + - - +
48D TYR* 3.7 17.6 + - - +
49D GLY* 2.9 24.8 + - - -
112D VAL* 3.9 16.2 - - + +
116D ILE* 4.4 15.9 - - - +
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Residues in contact with ARG 46 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53C GLU* 3.2 28.7 + - - +
56C ALA* 3.7 19.4 - - - +
57C ALA* 3.7 18.3 - - + +
60C LEU* 3.3 34.5 - - - +
42D GLN 2.9 12.7 + - - +
43D ALA* 3.3 11.9 - - - +
45D GLN* 1.3 76.7 - - - +
47D VAL* 1.3 60.4 + - - +
49D GLY* 3.3 1.9 + - - +
50D ALA* 2.9 27.0 + - - +
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Residues in contact with VAL 47 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54C LEU* 4.6 3.3 - - + +
57C ALA* 4.0 23.8 - - + +
58C THR* 4.4 12.3 - - + +
61C THR* 3.5 24.9 - - + +
43D ALA 2.9 18.4 + - - +
44D MET* 3.0 8.7 + - - +
46D ARG* 1.3 75.5 - - - +
48D TYR* 1.3 63.4 - - - +
50D ALA* 3.1 4.9 + - - +
51D GLN* 3.0 24.6 + - - +
107D LEU* 3.9 20.4 - - + -
111D MET* 4.0 13.9 - - + -
203D PHE* 5.1 9.6 - - + -
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Residues in contact with TYR 48 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44D MET 2.9 14.8 + - - +
45D GLN* 3.8 17.0 - - - +
47D VAL* 1.3 76.1 - - - +
49D GLY* 1.3 67.1 + - - +
51D GLN* 3.2 2.3 + - - +
52D ASN* 2.9 41.9 + - + +
104D ALA* 3.4 39.5 - - + -
105D LYS* 5.3 0.4 - - - -
107D LEU* 4.3 12.6 - - + -
108D ALA* 3.7 23.9 - - + +
111D MET* 5.0 0.2 - - - +
112D VAL* 4.1 16.8 - - + -
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Residues in contact with GLY 49 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45D GLN 2.9 18.0 + - - -
46D ARG* 3.7 2.7 - - - -
47D VAL 3.3 0.2 - - - -
48D TYR* 1.3 82.0 - - - +
50D ALA* 1.3 56.7 + - - +
52D ASN* 3.4 7.4 + - - +
53D GLU* 2.9 28.8 + - - +
----------------------------------------------------------
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Residues in contact with ALA 50 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50C ALA* 4.9 2.6 - - - +
53C GLU* 4.0 24.0 - - + +
54C LEU* 3.6 33.3 - - + +
57C ALA* 4.4 4.9 - - + -
46D ARG 2.9 13.6 + - - +
47D VAL* 3.1 9.4 + - - +
49D GLY* 1.3 74.5 - - - +
51D GLN* 1.3 65.8 + - - +
53D GLU* 3.2 8.5 + - - +
54D MET* 2.9 21.1 + - - +
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Residues in contact with GLN 51 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54C LEU* 3.5 24.8 - - - +
100C HIS* 5.4 6.1 + - - -
47D VAL* 3.0 13.9 + - - +
48D TYR 3.6 7.6 - - - +
50D ALA* 1.3 75.0 - - - +
52D ASN* 1.3 63.6 + - - +
54D MET* 3.0 6.4 + - - +
55D CYS* 3.0 25.4 + - - -
100D HIS* 2.8 38.4 + - - +
103D LEU* 3.4 26.1 - - + +
104D ALA* 3.9 27.8 - - + +
107D LEU* 3.9 20.2 - - + +
207D GLN* 4.8 4.0 - - - +
----------------------------------------------------------
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Residues in contact with ASN 52 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48D TYR* 2.9 40.9 + - + +
49D GLY* 3.5 8.7 + - - +
51D GLN* 1.3 75.0 - - - +
53D GLU* 1.3 58.7 + - - +
55D CYS* 3.1 15.3 + - - +
56D LEU* 3.0 44.7 + - - +
104D ALA* 4.5 6.5 - - - +
----------------------------------------------------------
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Residues in contact with GLU 53 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46C ARG* 2.8 48.8 + - - +
50C ALA* 4.1 17.5 - - + +
53C GLU* 6.1 4.0 - - + -
49D GLY 2.9 18.0 + - - +
50D ALA* 3.5 8.3 - - - +
52D ASN* 1.3 74.2 - - - +
54D MET* 1.3 61.2 + - - +
56D LEU* 3.4 9.5 + - - +
57D ALA* 2.9 27.5 + - - +
----------------------------------------------------------
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Residues in contact with MET 54 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47C ILE* 3.8 15.7 - - + +
50C ALA* 3.6 13.9 - - + +
51C GLN* 3.2 53.6 - - - +
54C LEU* 3.9 13.0 - - + -
203C TYR* 5.6 1.1 - - - -
50D ALA 2.9 12.1 + - - +
51D GLN* 3.0 10.3 + - - +
53D GLU* 1.3 75.9 - - - +
55D CYS* 1.3 61.4 - - - +
57D ALA* 3.3 4.6 + - - -
58D THR* 2.9 37.0 + - - -
100D HIS* 3.4 37.0 - - + +
----------------------------------------------------------
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Residues in contact with CYS 55 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51D GLN 3.0 18.8 + - - -
52D ASN* 3.1 14.1 - - - +
54D MET* 1.3 76.0 - - - +
56D LEU* 1.3 64.1 + - + +
58D THR* 2.7 23.4 + - - -
59D GLN* 3.0 8.8 + - - +
97D ASN* 3.0 11.9 - - - +
100D HIS* 3.4 41.5 - - - -
101D THR* 3.4 16.2 - - + +
104D ALA* 4.2 9.0 - - - -
----------------------------------------------------------
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Residues in contact with LEU 56 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46C ARG* 3.5 29.5 + - - +
52D ASN* 3.0 33.9 + - - +
53D GLU* 3.8 14.1 - - - +
55D CYS* 1.3 77.4 - - + +
57D ALA* 1.3 58.1 + - - +
59D GLN* 3.3 22.3 + - - +
60D GLN* 2.9 29.8 + - - +
----------------------------------------------------------
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Residues in contact with ALA 57 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43C ALA 4.9 1.6 - - - +
46C ARG* 3.8 32.0 - - + +
47C ILE* 3.5 30.9 - - + +
50C ALA* 4.2 4.3 - - + -
53D GLU 2.9 18.8 + - - +
54D MET* 3.5 6.3 - - - +
55D CYS 3.2 0.2 - - - -
56D LEU* 1.3 77.1 - - - +
58D THR* 1.3 58.2 + - - +
60D GLN* 3.2 4.6 + - - +
61D LEU* 2.9 24.4 + - - +
----------------------------------------------------------
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Residues in contact with THR 58 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47C ILE* 3.7 18.2 - - + -
203C TYR* 4.0 14.6 - - - +
54D MET* 2.9 27.3 + - - +
55D CYS* 2.7 21.7 + - - -
57D ALA* 1.3 75.5 - - - +
59D GLN* 1.3 64.0 + - - +
61D LEU* 3.2 1.7 + - - +
62D SER* 2.9 19.1 + - - -
93D VAL* 3.1 21.3 - - + +
96D LEU* 4.9 2.5 - - + -
97D ASN* 3.1 27.8 + - - +
100D HIS* 4.4 15.2 - - + +
----------------------------------------------------------
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Residues in contact with GLN 59 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55D CYS 3.0 13.7 + - - +
56D LEU* 3.5 29.1 - - - +
58D THR* 1.3 78.4 + - - +
60D GLN* 1.3 64.3 + - - +
62D SER* 3.3 6.5 + - - -
63D LYS* 3.0 27.2 + - + +
94D ASP* 5.6 1.3 - - - -
97D ASN* 3.8 14.6 + - - +
----------------------------------------------------------
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Residues in contact with GLN 60 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39C GLN 4.9 1.0 + - - -
42C GLN* 4.1 11.3 + - - +
43C ALA* 3.4 33.9 - - + +
46C ARG* 2.8 41.6 + - - +
56D LEU 2.9 13.9 + - - +
57D ALA* 3.2 8.9 + - - +
59D GLN* 1.3 79.8 - - - +
61D LEU* 1.3 62.5 + - - +
63D LYS* 3.1 9.7 + - + +
64D GLN* 2.9 23.8 + - + +
----------------------------------------------------------
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Residues in contact with LEU 61 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40C LEU* 4.4 3.8 - - + -
43C ALA* 4.0 16.3 - - + +
44C MET* 4.1 24.2 - - + +
47C ILE* 4.2 20.9 - - + -
111C MET* 4.7 4.9 - - + -
200C LEU* 5.0 6.1 - - + -
203C TYR* 3.9 24.0 - - + -
57D ALA 2.9 12.3 + - - +
58D THR 3.2 8.0 + - - +
60D GLN* 1.3 76.0 - - - +
62D SER* 1.3 63.4 + - - +
64D GLN* 3.2 3.6 + - - +
65D LEU* 3.0 47.1 + - + +
93D VAL* 3.9 26.5 - - + -
----------------------------------------------------------
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Residues in contact with SER 62 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58D THR 2.9 7.1 + - - -
59D GLN* 3.5 9.2 - - - -
61D LEU* 1.3 75.5 - - - +
63D LYS* 1.3 64.3 + - - +
65D LEU* 3.2 8.6 + - - +
66D LEU* 2.9 29.7 + - - +
90D SER* 3.2 16.3 + - - -
93D VAL* 3.6 23.3 - - - +
94D ASP* 2.8 31.6 + - - -
97D ASN* 6.4 0.2 - - - -
----------------------------------------------------------
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Residues in contact with LYS 63 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59D GLN* 3.0 19.6 + - + +
60D GLN* 3.6 10.8 - - - +
62D SER* 1.3 75.9 - - - +
64D GLN* 1.3 57.2 + - - +
66D LEU* 3.5 10.4 + - + +
67D ALA* 2.9 28.2 + - + +
----------------------------------------------------------
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Residues in contact with GLN 64 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36C TYR* 3.0 42.9 + - + -
39C GLN* 3.0 49.0 + - - +
40C LEU* 4.1 27.1 - - + -
43C ALA* 4.5 8.5 - - + +
60D GLN* 2.9 15.6 + - + +
61D LEU* 3.2 8.5 + - - +
63D LYS* 1.3 75.9 - - - +
65D LEU* 1.3 61.3 - - - +
67D ALA* 2.9 27.5 + - - +
68D TYR 3.0 5.0 + - - -
----------------------------------------------------------
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Residues in contact with LEU 65 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36C TYR* 3.6 7.4 - - - +
40C LEU* 3.8 26.5 - - + -
196C LEU* 6.1 0.7 - - + -
200C LEU* 3.6 37.9 - - + -
61D LEU* 3.0 24.4 + - + +
62D SER 3.5 6.3 - - - +
64D GLN* 1.3 76.1 - - - +
66D LEU* 1.3 64.1 + - - +
68D TYR* 3.4 16.5 + - - +
69D GLU 4.6 0.7 + - - -
86D LEU* 3.9 28.6 - - + +
87D HIS* 5.3 0.5 + - - -
89D PHE* 3.9 21.8 - - + +
90D SER* 3.9 13.2 - - - +
93D VAL* 4.5 11.9 - - + -
----------------------------------------------------------
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Residues in contact with LEU 66 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62D SER* 2.9 27.9 + - - +
63D LYS* 3.7 8.1 - - + +
65D LEU* 1.3 75.8 - - - +
67D ALA* 1.3 63.1 + - - +
68D TYR 3.1 1.3 + - - -
69D GLU* 3.4 24.5 + - - +
70D LYS* 4.1 2.9 + - - +
87D HIS* 3.5 32.8 - - + +
90D SER* 3.3 25.4 - - - +
94D ASP* 5.0 5.2 - - - +
----------------------------------------------------------
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Residues in contact with ALA 67 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36C TYR* 4.2 3.6 - - + -
39C GLN* 5.8 0.2 - - - +
63D LYS* 2.9 17.8 + - + +
64D GLN* 2.9 26.8 + - - +
66D LEU* 1.3 75.1 - - - +
68D TYR* 1.3 62.7 + - - +
69D GLU 3.3 0.2 - - - -
70D LYS* 3.2 19.6 + - + +
71D GLN* 3.4 10.7 + - - +
----------------------------------------------------------
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Residues in contact with TYR 68 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36C TYR* 3.2 47.6 - + - +
192C LYS* 5.4 7.4 - - - +
196C LEU* 3.5 28.5 - - + +
64D GLN 3.0 5.5 + - - -
65D LEU 3.5 10.1 - - - +
66D LEU 3.1 0.4 - - - -
67D ALA* 1.3 78.4 - - - +
69D GLU* 1.3 63.5 + - - +
71D GLN* 3.2 33.7 - - - +
73D PHE* 3.3 35.6 - + - -
78D GLY* 5.3 1.8 - - - -
79D ASP 5.6 0.2 + - - -
82D VAL* 4.4 13.7 - - + +
83D ILE* 3.9 23.8 - - + -
86D LEU* 3.6 19.5 - - + -
----------------------------------------------------------
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Residues in contact with GLU 69 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65D LEU 4.6 0.8 + - - +
66D LEU* 3.4 14.8 + - - +
67D ALA 3.3 0.6 - - - -
68D TYR* 1.3 82.7 - - - +
70D LYS* 1.3 64.7 + - + +
71D GLN 3.1 10.1 + - - +
73D PHE* 4.1 5.6 - - - -
83D ILE* 4.8 27.6 - - + +
87D HIS* 5.3 9.0 + - - -
----------------------------------------------------------
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Residues in contact with LYS 70 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66D LEU 4.1 2.3 + - - +
67D ALA* 3.2 17.9 + - + +
69D GLU* 1.3 78.9 - - + +
71D GLN* 1.3 63.3 + - - +
72D ASN* 3.8 1.6 + - - +
----------------------------------------------------------
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Residues in contact with GLN 71 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32C ALA* 2.7 46.8 + - + +
33C ILE* 5.2 1.2 + - - -
35C ASN* 5.1 1.8 - - - +
36C TYR* 3.4 22.6 - - + +
67D ALA 3.4 8.1 + - - +
68D TYR* 3.2 36.7 + - - +
69D GLU 3.1 3.9 - - - +
70D LYS* 1.3 81.6 - - - +
72D ASN* 1.3 66.0 + - - +
73D PHE* 3.2 29.8 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il