Contacts of the helix formed by residues 9 - 20 (chain A) in PDB entry 5E63
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 9 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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8A LEU* 1.3 74.1 - - - +
10A PRO* 1.4 74.4 - - - +
11A TRP* 2.5 45.8 + - - +
12A ALA* 3.4 13.9 + - + +
13A VAL* 3.1 22.4 + - - +
61A PHE* 4.4 0.4 - - - -
168A ASP* 4.9 1.6 + - - -
170A PHE* 3.4 41.1 - - + -
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Residues in contact with PRO 10 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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8A LEU 4.4 2.5 - - - +
9A ASN* 1.4 93.2 - - - +
11A TRP* 1.3 57.8 + - + +
13A VAL* 3.2 5.4 + - - +
14A VAL* 3.0 31.5 + - - +
61A PHE* 3.9 14.8 - - + -
93A PHE* 3.5 25.6 - - + -
97A TYR* 4.1 28.5 - - + +
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Residues in contact with TRP 11 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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9A ASN* 2.5 24.5 + - - +
10A PRO* 1.3 66.8 - - + +
12A ALA* 1.3 53.1 - - - +
14A VAL* 3.2 14.8 + - + +
15A GLY 2.7 30.3 + - - -
96A LYS 4.6 3.6 - - - -
97A TYR* 3.6 45.6 - + + -
98A SER 3.9 20.2 - - - -
167A PRO* 3.3 40.4 + - + -
168A ASP* 3.3 33.8 + - + +
170A PHE* 3.8 4.7 - - + -
171A TRP* 3.1 29.4 - - + +
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Residues in contact with ALA 12 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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8A LEU* 5.2 1.3 - - + -
9A ASN* 3.4 26.4 + - + +
10A PRO 3.3 0.4 - - - -
11A TRP* 1.3 74.6 - - - +
13A VAL* 1.3 57.8 + - + +
15A GLY 3.4 0.2 + - - -
16A PHE* 2.8 33.3 + - - +
170A PHE* 3.3 26.2 + - + +
173A ALA* 5.2 1.6 - - + -
174A GLY* 3.2 15.7 - - - +
257A LYS 6.0 0.4 - - - +
259A ILE* 4.6 19.2 - - + +
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Residues in contact with VAL 13 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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8A LEU* 4.1 18.6 - - + -
9A ASN 3.1 14.2 + - - +
10A PRO 3.2 8.3 + - - +
12A ALA* 1.3 77.3 - - - +
14A VAL* 1.3 59.2 + - - +
16A PHE* 3.0 6.5 + - - +
17A ILE* 2.8 47.8 + - + +
58A LEU* 4.1 26.5 - - + -
61A PHE* 4.1 18.2 - - + -
62A PHE* 4.3 14.8 - - + -
93A PHE* 4.2 19.1 - - + -
94A PHE* 5.1 0.7 - - + -
259A ILE* 5.7 0.2 - - - -
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Residues in contact with VAL 14 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
10A PRO 3.0 17.1 + - - +
11A TRP* 3.2 11.0 + - + +
13A VAL* 1.3 71.5 - - - +
15A GLY* 1.3 54.7 + - - +
17A ILE* 3.1 2.6 + - - +
18A ASP* 2.7 35.5 + - - +
93A PHE* 3.7 11.0 - - + -
94A PHE* 4.5 9.0 - - + -
97A TYR* 3.4 38.4 - - + +
98A SER 3.4 29.6 - - - +
99A LEU* 3.8 14.1 - - + +
171A TRP* 3.8 12.6 - - + -
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Residues in contact with GLY 15 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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11A TRP 2.7 16.4 + - - -
12A ALA 3.7 0.9 - - - -
14A VAL* 1.3 72.1 - - - +
16A PHE* 1.3 62.9 + - - +
18A ASP* 3.2 3.6 + - - +
19A ALA 3.0 18.2 + - - -
171A TRP* 3.2 41.5 - - - -
175A PHE* 3.4 15.0 - - - -
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Residues in contact with PHE 16 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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12A ALA 2.8 21.2 + - - +
13A VAL* 3.0 6.5 + - - +
15A GLY* 1.3 71.9 - - - +
17A ILE* 1.3 63.5 + - + +
19A ALA* 3.3 4.1 + - - +
20A GLU* 2.7 44.8 + - + +
45A VAL* 3.9 23.3 - - + -
47A VAL* 3.9 16.8 - - + -
51A ASP* 5.8 1.8 - - - -
54A LEU* 3.8 27.6 - - + -
58A LEU* 4.6 13.5 - - + -
174A GLY 3.3 19.4 - - - +
177A SER* 4.0 8.5 - - - -
178A GLY* 3.7 23.8 - - - -
259A ILE* 3.9 21.8 - - + -
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Residues in contact with ILE 17 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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13A VAL* 2.8 34.6 + - + +
14A VAL 3.7 3.1 - - - +
16A PHE* 1.3 80.6 - - + +
18A ASP* 1.3 64.6 + - - +
19A ALA 3.1 1.6 - - - -
21A GLY* 2.9 28.7 + - - +
23A PHE* 4.1 16.4 - - + -
43A PHE* 3.8 36.8 - - + -
45A VAL* 3.9 29.8 - - + -
58A LEU* 5.2 6.5 - - + -
62A PHE* 5.8 1.1 - - + -
94A PHE* 4.2 13.2 - - + -
99A LEU* 4.2 6.5 - - + -
103A LYS* 3.4 8.3 - - - +
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Residues in contact with ASP 18 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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14A VAL 2.7 12.5 + - - +
15A GLY 3.4 9.2 - - - +
17A ILE* 1.3 71.2 - - - +
19A ALA* 1.3 62.1 + - - +
99A LEU* 3.3 26.8 - - - +
100A ILE 2.8 21.6 + - - -
101A THR* 3.1 42.6 + - + +
103A LYS* 3.5 19.2 + - - +