Contacts of the helix formed by residues 1697 - 1735 (chain D) in PDB entry 5EK0
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA1697 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1655D PHE* 4.6 6.7 - - + -
1687D VAL* 4.7 0.7 - - - +
1690D LEU* 4.3 22.2 - - + +
1691D MET* 3.8 11.0 - - + +
1694D TYR* 3.2 27.3 + - + +
1695D PRO 3.5 1.4 + - - -
1696D TYR* 1.3 73.6 - - - +
1698D TRP* 1.4 58.7 + - - +
1699D VAL 3.2 2.9 - - - -
1700D PHE* 3.0 28.5 + - - +
1701D PHE* 3.4 13.8 - - + -
1802D PX4 3.9 9.6 - - - -
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Residues in contact with TRP1698 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1671C TYR* 4.0 9.6 - - + -
1802C PX4 3.2 86.2 - - + -
1687D VAL* 4.1 10.5 - - - -
1691D MET* 3.6 14.2 - - - -
1695D PRO 3.6 18.8 - - - -
1696D TYR* 3.6 23.8 - + - +
1697D ALA* 1.4 73.0 - - - +
1699D VAL* 1.4 82.5 + - + +
1700D PHE 3.0 6.2 + - - -
1701D PHE 3.9 1.3 - - - +
1702D ILE* 3.0 55.0 + - + +
1703D PRO* 3.4 4.3 - - + +
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Residues in contact with VAL1699 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1696D TYR* 3.3 23.3 - - + +
1697D ALA 3.2 1.2 - - - -
1698D TRP* 1.4 108.3 - - + +
1700D PHE* 1.4 55.4 + - + +
1703D PRO* 3.2 25.0 - - + +
1802D PX4 4.7 5.8 - - - +
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Residues in contact with PHE1700 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1647D PHE* 3.3 43.1 - + - -
1650D MET* 3.5 41.1 - - + -
1651D ALA* 4.2 4.9 - - + -
1654D LEU* 3.7 19.1 - - + -
1655D PHE* 3.6 17.5 - + + -
1673D LEU* 4.1 13.9 - - + -
1697D ALA 3.0 12.6 + - - +
1699D VAL* 1.4 78.9 - - - +
1701D PHE* 1.3 89.2 + + - +
1703D PRO* 3.6 4.0 - - - +
1704D PHE* 3.1 24.9 + - + +
1802D PX4 5.0 5.8 - - - +
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Residues in contact with PHE1701 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1655D PHE* 3.5 37.7 - + - -
1663D PHE* 3.6 27.8 - + - -
1673D LEU* 4.6 5.8 - - + -
1676D VAL* 4.4 24.9 - - + -
1682D TRP* 5.1 2.9 - - + -
1686D ILE* 5.1 0.4 - - + -
1687D VAL* 3.6 41.1 - - + -
1690D LEU* 3.7 22.4 - - + -
1697D ALA* 3.4 15.3 - - + +
1698D TRP 3.4 2.0 + - - +
1700D PHE* 1.3 92.6 - + - +
1702D ILE* 1.4 54.9 + - + +
1704D PHE* 3.1 8.8 + + - +
1705D ILE* 2.8 39.4 + - - +
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Residues in contact with ILE1702 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1671C TYR* 3.7 32.8 - - + -
1674C PHE* 3.9 20.4 - - + -
1802C PX4 3.8 28.0 - - + -
1682D TRP* 4.7 5.4 - - + -
1698D TRP* 3.0 45.4 + - + +
1701D PHE* 1.4 72.7 - - + +
1703D PRO* 1.4 66.2 - - + +
1705D ILE* 3.0 18.4 + - - +
1706D PHE* 3.1 40.9 + - + -
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Residues in contact with PRO1703 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1647D PHE* 5.0 4.5 - - + -
1698D TRP* 3.4 13.7 - - + +
1699D VAL* 3.2 32.1 - - + +
1700D PHE 3.6 5.6 - - - +
1702D ILE* 1.4 91.2 - - + +
1704D PHE* 1.4 55.7 - - - +
1706D PHE* 3.8 10.2 + - + +
1707D VAL* 3.0 34.7 + - + +
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Residues in contact with PHE1704 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1644D PHE* 4.2 11.9 - + - -
1647D PHE* 3.5 50.7 - + + -
1673D LEU* 3.3 51.6 - - + -
1676D VAL* 3.7 26.7 - - + -
1677D MET* 4.2 9.4 - - + -
1700D PHE* 3.1 23.1 + - + +
1701D PHE* 3.1 8.5 + + - +
1703D PRO* 1.4 72.2 - - - +
1705D ILE* 1.4 70.3 + - - +
1707D VAL* 3.6 1.0 + - - +
1708D VAL* 3.1 47.9 + - + +
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Residues in contact with ILE1705 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1674C PHE* 3.7 30.3 - - + -
1678C THR* 4.7 2.2 - - + -
1676D VAL* 3.4 39.5 - - + +
1677D MET* 5.3 2.0 - - - -
1679D LEU* 3.8 23.6 - - + -
1682D TRP* 4.4 13.9 - - + -
1701D PHE 2.8 25.9 + - - +
1702D ILE* 3.0 11.4 + - - +
1704D PHE* 1.4 75.3 - - + +
1706D PHE* 1.4 55.7 + - + +
1708D VAL* 3.3 4.5 + - - +
1709D THR* 2.6 47.9 + - + +
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Residues in contact with PHE1706 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1674C PHE* 3.6 34.8 - + - -
1677C MET* 5.7 5.2 - - + -
1802C PX4 4.5 33.2 - - + -
1702D ILE* 3.1 34.1 + - + +
1703D PRO* 4.1 7.9 - - + +
1705D ILE* 1.4 78.0 - - + +
1707D VAL* 1.4 54.7 + - + +
1709D THR* 4.5 4.3 - - - -
1710D PHE* 2.9 38.6 + - - +
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Residues in contact with VAL1707 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1643D PHE* 4.1 33.0 - - + -
1647D PHE* 4.0 29.6 - - + -
1703D PRO* 3.0 26.5 + - + +
1704D PHE 3.9 3.4 - - - +
1706D PHE* 1.4 77.1 - - + +
1708D VAL* 1.3 60.5 + - + +
1710D PHE* 3.8 4.8 - - - +
1711D VAL* 3.1 29.8 + - + +
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Residues in contact with VAL1708 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1640D MET* 3.3 32.3 - - + +
1643D PHE* 5.6 3.4 - - + -
1644D PHE* 4.2 9.0 - - + -
1647D PHE* 5.4 2.2 - - + -
1677D MET* 3.6 41.3 - - + +
1704D PHE* 3.1 45.7 + - + +
1705D ILE* 4.1 4.9 - - - +
1707D VAL* 1.3 77.4 - - + +
1709D THR* 1.4 64.3 + - - +
1711D VAL* 3.6 0.7 + - - +
1712D MET* 3.0 25.0 + - + +
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Residues in contact with THR1709 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1677D MET 5.6 1.7 + - - -
1679D LEU* 5.5 9.5 - - + +
1705D ILE* 2.6 39.6 + - + +
1706D PHE* 4.0 6.1 - - - -
1708D VAL* 1.4 73.1 - - - +
1710D PHE* 1.3 60.0 + - - +
1712D MET* 3.2 9.3 + - + +
1713D ILE* 2.9 51.0 + - + +
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Residues in contact with PHE1710 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1626C LEU* 3.1 47.8 - - + -
1627C ILE* 4.6 2.2 - - + -
1629C VAL* 3.7 11.7 - - + -
1630C ILE* 3.6 25.8 - - + -
1633C MET* 3.5 39.3 - - + -
1719C ILE* 5.1 3.1 - - + -
1706D PHE 2.9 19.2 + - - +
1707D VAL* 3.8 5.2 - - - +
1709D THR* 1.3 77.1 - - - +
1711D VAL* 1.4 57.8 + - + +
1713D ILE* 3.3 12.2 + - + +
1714D ASN* 2.8 55.4 + - - -
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Residues in contact with VAL1711 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1626C LEU* 3.7 26.0 - - + -
1636D VAL* 3.8 24.7 - - + +
1639D LEU* 5.2 4.0 - - + -
1640D MET* 3.8 35.4 - - + +
1643D PHE* 4.9 19.3 - - + -
1707D VAL* 3.1 20.5 + - + +
1708D VAL 3.8 4.7 - - - +
1709D THR 3.4 0.2 - - - -
1710D PHE* 1.4 74.4 - - + +
1712D MET* 1.3 61.8 - - - +
1714D ASN* 3.5 3.8 + - - +
1715D LEU* 3.1 23.1 + - + +
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Residues in contact with MET1712 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1709A THR* 5.5 0.7 - - + -
1713A ILE* 4.6 12.6 - - + -
1640D MET* 3.8 18.4 - - + -
1677D MET* 4.3 14.1 - - + -
1708D VAL* 3.0 21.3 + - + +
1709D THR* 3.2 15.7 + - + +
1711D VAL* 1.3 72.4 - - - +
1713D ILE* 1.4 64.5 + - + +
1715D LEU* 3.1 26.9 + - + +
1716D VAL* 3.1 34.3 + - + +
1803D PX4 4.4 34.1 - - + -
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Residues in contact with ILE1713 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1633C MET* 6.0 0.2 - - + -
1712C MET* 5.9 4.0 - - - -
1715C LEU* 4.5 13.5 - - + -
1716C VAL* 3.8 45.5 - - + -
1719C ILE* 4.0 18.2 - - + -
1709D THR* 2.9 37.9 + - + +
1710D PHE* 3.6 13.9 - - + +
1712D MET* 1.4 69.5 - - + +
1714D ASN* 1.4 54.8 + - - +
1716D VAL* 3.2 10.4 + - - +
1717D VAL* 2.8 43.7 + - + +
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Residues in contact with ASN1714 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1626C LEU* 3.6 26.5 - - + +
1629C VAL* 3.8 21.0 - - - +
1719C ILE* 4.0 15.9 - - - +
1636D VAL* 5.2 2.5 - - + -
1710D PHE* 2.8 59.3 + - - +
1711D VAL 3.7 4.7 - - - +
1712D MET 3.3 0.2 - - - -
1713D ILE* 1.4 71.7 - - - +
1715D LEU* 1.3 55.7 + - - +
1717D VAL* 3.7 7.2 - - - +
1718D ALA* 2.8 34.7 + - - +
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Residues in contact with LEU1715 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1713A ILE* 5.3 6.1 - - + -
1633D MET* 3.8 35.6 - - + +
1636D VAL* 3.8 30.7 - - + +
1637D ILE* 4.1 18.8 - - + +
1640D MET* 6.5 0.2 - - + -
1711D VAL* 3.1 12.7 + - + +
1712D MET* 3.1 24.3 + - + +
1714D ASN* 1.3 75.5 - - - +
1716D VAL* 1.4 60.2 + - + +
1718D ALA* 3.2 8.8 + - - +
1719D ILE* 3.1 50.0 + - + +
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Residues in contact with VAL1716 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1713A ILE* 3.9 39.7 - - + -
1716A VAL* 6.3 3.8 - - + -
1717A VAL* 4.2 4.5 - - + +
1716C VAL* 6.4 2.2 - - + -
1712D MET* 3.1 27.3 + - + +
1713D ILE* 3.5 8.1 - - - +
1715D LEU* 1.4 72.6 - - + +
1717D VAL* 1.4 64.2 + - + +
1719D ILE* 3.3 20.7 + - - +
1720D ILE* 3.4 25.6 + - + +
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Residues in contact with VAL1717 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1716C VAL* 4.2 11.7 - - + +
1719C ILE* 3.8 26.7 - - + +
1720C ILE* 3.8 33.9 - - + -
1723C ALA* 4.9 2.2 - - + -
1713D ILE* 2.8 40.6 + - + +
1714D ASN* 3.7 7.9 - - - +
1716D VAL* 1.4 69.4 - - + +
1718D ALA* 1.4 63.8 + - - +
1720D ILE* 3.2 13.4 + - + +
1721D VAL* 3.1 35.1 + - + +
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Residues in contact with ALA1718 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1632D GLY 6.1 2.9 - - - +
1633D MET* 6.0 3.4 - - + -
1636D VAL* 5.4 9.2 - - + -
1714D ASN 2.8 20.4 + - - +
1715D LEU* 3.2 10.1 + - - +
1717D VAL* 1.4 71.3 - - - +
1719D ILE* 1.4 55.3 + - + +
1721D VAL* 3.4 6.6 + - - +
1722D ASP* 2.9 36.7 + - - +
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Residues in contact with ILE1719 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1710A PHE* 5.5 4.0 - - + -
1713A ILE* 3.8 22.2 - - + -
1714A ASN* 3.9 15.3 - - - +
1717A VAL* 3.8 23.9 - - + +
1629D VAL* 3.8 30.7 - - + +
1633D MET* 3.8 16.8 - - + -
1715D LEU* 3.1 38.7 + - + +
1716D VAL* 3.3 6.7 + - - +
1718D ALA* 1.4 74.8 - - + +
1720D ILE* 1.4 60.3 + - - +
1722D ASP* 3.8 6.3 - - - +
1723D ALA* 3.3 23.5 + - + +
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Residues in contact with ILE1720 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1717A VAL* 3.7 23.8 - - + +
1720A ILE* 3.8 30.5 - - + -
1721A VAL* 5.2 1.7 - - + +
1720C ILE* 3.7 39.7 - - + -
1724C MET* 6.0 0.4 - - + -
1716D VAL* 3.4 23.6 - - + +
1717D VAL* 3.2 12.5 + - + +
1719D ILE* 1.4 72.7 - - - +
1721D VAL* 1.3 56.2 + - + +
1723D ALA* 3.0 7.3 + - - +
1724D MET* 2.8 61.7 + - + +
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Residues in contact with VAL1721 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1720C ILE* 5.0 4.9 - - + +
1723C ALA* 3.7 32.5 - - + +
1724C MET* 4.7 6.3 - - + -
1727C LEU* 4.1 30.4 - - + +
1717D VAL* 3.1 23.7 + - + +
1718D ALA* 4.0 5.8 - - - +
1720D ILE* 1.3 74.0 - - + +
1722D ASP* 1.4 57.6 + - - +
1724D MET* 2.9 23.9 + - - +
1725D ALA* 3.0 14.0 + - - +
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Residues in contact with ASP1722 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1628D SER 5.0 2.6 - - - +
1629D VAL* 4.9 20.1 - - + +
1632D GLY* 5.1 10.2 - - - -
1718D ALA 2.9 23.3 + - - +
1719D ILE* 3.8 8.1 - - - +
1721D VAL* 1.4 71.9 - - - +
1723D ALA* 1.3 58.0 + - - +
1725D ALA* 3.7 15.2 - - - +
1726D ILE* 3.4 21.4 - - - +
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Residues in contact with ALA1723 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1717A VAL* 4.4 8.1 - - + -
1721A VAL* 3.8 23.0 - - + +
1719D ILE* 3.3 11.4 + - + +
1720D ILE 3.0 10.5 + - - +
1722D ASP* 1.3 75.9 + - - +
1724D MET* 1.4 59.7 + - - +
1725D ALA 3.4 1.1 - - - -
1726D ILE* 3.4 31.8 - - + +
1727D LEU* 3.6 13.9 + - - +
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Residues in contact with MET1724 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1720A ILE* 3.8 6.3 - - + -
1721A VAL* 5.1 2.0 - - - -
1724A MET* 3.7 47.6 - - + +
1728A ASN* 6.0 0.7 - - - -
1724B MET* 5.2 1.3 - - + -
1720C ILE* 5.1 4.0 - - + -
1724C MET* 3.5 48.5 - - + -
1727C LEU* 4.4 2.9 - - + +
1720D ILE* 2.8 46.0 + - + +
1721D VAL* 2.9 8.0 + - - +
1723D ALA* 1.4 73.4 - - - +
1725D ALA* 1.3 56.6 + - - +
1726D ILE 3.1 4.9 - - - -
1727D LEU* 3.5 15.4 + - - -
1728D ASN* 3.0 38.2 + - - +
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Residues in contact with ALA1725 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1727C LEU* 4.5 13.9 - - + +
1721D VAL 3.0 8.9 + - - +
1722D ASP* 3.7 14.6 - - - +
1724D MET* 1.3 76.4 - - - +
1726D ILE* 1.4 56.9 + - + +
1728D ASN* 5.0 2.5 - - - -
1729D GLN* 3.1 33.1 + - - +
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Residues in contact with ILE1726 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1721A VAL* 6.1 3.1 - - + -
1722D ASP* 3.4 26.0 - - - +
1723D ALA* 3.4 18.8 - - + +
1724D MET 3.1 0.2 - - - -
1725D ALA* 1.4 78.8 - - + +
1727D LEU* 1.4 63.9 + - + +
1728D ASN 3.5 0.2 - - - -
1729D GLN* 3.8 2.0 + - - +
1730D LYS* 3.3 45.5 + - + +
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Residues in contact with LEU1727 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1721A VAL* 3.7 38.1 - - + +
1724A MET* 3.6 48.2 - - + +
1725A ALA* 3.9 8.1 - - + +
1728A ASN* 3.8 17.1 - - + +
1723D ALA 3.6 16.9 + - - +
1724D MET* 3.5 17.6 + - - +
1726D ILE* 1.4 77.8 - - + +
1728D ASN* 1.3 61.7 + - - +
1730D LYS* 3.5 21.2 - - - +
1731D GLU* 3.4 21.5 + - - +
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Residues in contact with ASN1728 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1728A ASN* 3.6 24.7 - - - +
1724B MET* 5.8 1.0 - - - +
1728B ASN* 5.5 1.3 + - - +
1731B GLU* 4.9 0.3 - - - +
1724C MET* 3.8 20.3 - - - +
1727C LEU* 5.6 4.0 - - + -
1728C ASN* 3.1 26.3 + - - -
1731C GLU* 3.1 21.3 - - + +
1724D MET* 3.0 26.0 + - - +
1725D ALA* 5.0 3.1 - - - -
1727D LEU* 1.3 77.9 - - - +
1729D GLN* 1.4 55.4 + - - +
1730D LYS 3.5 0.2 - - - -
1731D GLU* 3.5 9.4 + - - +
1732D GLU* 2.8 37.2 + - - +
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Residues in contact with GLN1729 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1725D ALA* 3.1 24.5 + - - +
1726D ILE* 4.4 2.7 - - - +
1727D LEU 3.4 0.8 - - - -
1728D ASN* 1.4 75.2 - - - +
1730D LYS* 1.4 58.9 + - - +
1731D GLU 3.2 1.6 - - - -
1732D GLU* 3.3 37.1 + - - +
1733D GLN* 3.2 29.7 + - - +
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Residues in contact with LYS1730 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1721A VAL* 6.1 2.4 - - - +
1732A GLU* 4.6 0.8 - - - +
1726D ILE* 3.3 36.4 + - + +
1727D LEU* 3.5 27.6 - - - +
1729D GLN* 1.4 76.8 - - - +
1731D GLU* 1.4 56.4 + - + +
1733D GLN* 3.7 21.0 + - - +
1734D HIS* 3.3 25.8 + - - +
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Residues in contact with GLU1731 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1728A ASN* 3.0 44.9 - - + +
1731A GLU* 3.0 21.4 - - - +
1732A GLU* 3.4 23.8 - - - +
1731B GLU* 4.6 0.7 - - - +
1731C GLU* 3.0 26.0 - - - +
1735C ILE* 5.3 0.5 - - - +
1727D LEU 3.4 18.3 + - - +
1728D ASN* 3.5 6.2 - - - +
1730D LYS* 1.4 76.9 - - - +
1732D GLU* 1.4 57.6 + - - +
1733D GLN 3.5 0.2 - - - -
1734D HIS* 3.4 1.4 + - - +
1735D ILE* 2.9 48.4 + - + +
----------------------------------------------------------
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Residues in contact with GLU1732 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1731C GLU* 3.3 35.3 - - + +
1734C HIS* 3.8 24.4 + - - +
1735C ILE* 4.1 22.7 - - + +
1728D ASN* 2.8 17.4 + - - +
1729D GLN* 3.3 34.9 + - - +
1731D GLU* 1.4 77.2 + - - +
1733D GLN* 1.4 57.7 + - - +
1735D ILE* 3.0 30.0 + - - +
1736D ILE* 3.4 5.9 - - - +
----------------------------------------------------------
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Residues in contact with GLN1733 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1729D GLN* 3.2 13.6 + - - +
1730D LYS* 3.7 24.8 + - - +
1732D GLU* 1.4 74.3 - - - +
1734D HIS* 1.4 66.3 + - + +
1736D ILE* 3.4 29.3 - - + +
----------------------------------------------------------
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Residues in contact with HIS1734 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1729A GLN* 5.2 2.9 + - - -
1732A GLU* 3.2 36.3 + - + +
1736A ILE* 4.9 15.3 - - + +
1730D LYS 3.3 17.9 + - - +
1731D GLU 3.5 6.1 - - - +
1732D GLU 3.3 0.6 - - - -
1733D GLN* 1.4 81.4 - - + +
1735D ILE* 1.4 55.9 + - - +
1736D ILE 3.0 7.8 + - - -
1737D ASP* 3.4 25.4 + - - +
----------------------------------------------------------
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Residues in contact with ILE1735 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1732A GLU* 3.9 24.2 - - + +
1735A ILE* 3.7 49.6 - - + -
1736A ILE* 5.7 4.3 - - + -
1735C ILE* 3.8 35.2 - - + +
1731D GLU* 2.9 45.8 + - + +
1732D GLU* 3.0 15.9 + - - +
1734D HIS* 1.4 71.1 - - - +
1736D ILE* 1.3 65.3 + - - +
1737D ASP* 4.9 1.8 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il