Contacts of the helix formed by residues 692 - 712 (chain A) in PDB entry 5FLZ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LEU 692 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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643A ILE* 6.3 5.6 - - + -
689A LEU 5.6 0.9 - - - +
690A SER* 3.7 20.1 - - - +
691A ASP* 1.4 88.1 - - - +
693A ILE* 1.4 64.2 + - + +
694A PRO* 3.5 0.9 - - - -
695A LEU* 3.4 13.7 + - + +
696A GLN* 3.1 27.6 + - + +
790A LYS* 5.5 1.4 + - - -
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Residues in contact with ILE 693 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
588A TYR* 3.5 50.5 - - + +
591A VAL* 4.3 16.8 - - + -
690A SER 6.4 0.2 - - - -
691A ASP* 5.2 1.3 - - - -
692A LEU* 1.4 78.1 - - + +
694A PRO* 1.3 69.3 - - + +
696A GLN* 3.1 20.4 + - - +
697A LEU* 2.9 41.5 + - + +
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Residues in contact with PRO 694 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
691A ASP* 4.0 13.2 - - - +
692A LEU 3.8 2.7 - - - -
693A ILE* 1.3 94.0 - - + +
695A LEU* 1.4 65.8 + - + +
697A LEU* 3.5 14.3 - - + +
698A GLN* 3.1 20.3 + - - +
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Residues in contact with LEU 695 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
691A ASP 5.3 6.7 - - - +
692A LEU* 3.4 13.8 + - + +
693A ILE 3.3 0.4 - - - -
694A PRO* 1.4 62.6 - - + +
696A GLN* 1.4 66.2 + - - +
698A GLN* 3.1 28.4 + - - +
699A ILE* 3.2 17.6 + - - +
786A LEU* 5.7 4.9 - - + -
787A SER 5.1 7.2 - - - +
790A LYS* 4.0 35.2 - - + +
791A PHE* 4.3 38.6 - - + +
794A TYR* 5.3 6.1 - - + -
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Residues in contact with GLN 696 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
591A VAL* 4.1 5.5 - - - +
592A LEU* 4.8 12.5 - - + +
595A HIS* 3.2 37.4 + - - -
640A ILE* 6.4 1.3 - - + -
643A ILE* 5.5 11.2 - - + -
692A LEU* 3.1 16.2 + - + +
693A ILE* 3.1 25.5 + - - +
695A LEU* 1.4 80.2 - - - +
697A LEU* 1.3 55.5 + - - +
699A ILE* 3.1 17.0 + - + +
700A PHE* 2.8 38.6 + - - +
790A LYS* 5.0 4.9 - - - +
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Residues in contact with LEU 697 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
554A LYS* 4.8 15.9 - - - +
557A ILE* 5.3 8.1 - - + -
591A VAL* 5.8 3.1 - - + -
594A TYR* 4.5 16.6 - - - +
595A HIS* 4.8 11.4 - - + +
693A ILE* 2.9 24.5 + - + +
694A PRO* 3.5 13.5 - - + +
696A GLN* 1.3 83.3 - - - +
698A GLN* 1.4 57.0 + - - +
700A PHE* 3.2 6.4 + - + +
701A ASP* 2.7 41.9 + - - +
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Residues in contact with GLN 698 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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694A PRO 3.1 12.3 + - - +
695A LEU* 3.1 19.8 + - - +
697A LEU* 1.4 73.9 - - - +
699A ILE* 1.3 68.1 + - + +
701A ASP* 3.4 10.1 + - - +
702A ILE* 3.3 32.5 + - + +
774A ILE* 6.2 1.0 - - - +
790A LYS* 3.8 28.9 + - - +
793A PHE* 5.5 2.7 - - - +
794A TYR* 3.3 28.1 - - - +
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Residues in contact with ILE 699 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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636A MET* 5.6 0.2 - - - -
695A LEU 3.4 11.2 - - - +
696A GLN* 3.1 13.2 + - + +
698A GLN* 1.3 83.0 - - + +
700A PHE* 1.4 53.4 + - - +
702A ILE* 3.1 13.2 + - + +
703A VAL* 2.9 37.6 + - + +
771A ALA* 6.1 0.7 - - + -
774A ILE* 4.0 24.5 - - + -
775A PHE* 3.4 36.3 - - + -
778A CYS* 4.8 2.2 - - - -
790A LYS* 3.7 39.0 - - + +
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Residues in contact with PHE 700 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
447A THR* 6.5 1.1 - - + -
594A TYR* 3.5 24.7 - + - -
595A HIS* 3.1 53.2 - + + +
598A LEU* 4.0 19.3 - - + -
599A LEU* 4.3 14.6 - - + -
696A GLN* 2.8 29.1 + - - +
697A LEU* 3.2 13.6 + - + +
699A ILE* 1.4 71.2 - - - +
701A ASP* 1.3 57.2 + - - +
703A VAL* 3.2 17.0 + - + +
704A TYR* 2.7 50.7 + + + +
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Residues in contact with ASP 701 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
697A LEU* 2.7 38.0 + - - +
698A GLN* 3.7 8.8 - - - +
699A ILE 3.4 0.2 - - - -
700A PHE* 1.3 79.0 - - - +
702A ILE* 1.4 63.8 + - + +
704A TYR* 3.2 8.3 + - - +
705A LYS* 3.0 23.7 + - - +
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Residues in contact with ILE 702 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
698A GLN* 3.3 22.6 + - + +
699A ILE* 3.1 13.6 + - + +
701A ASP* 1.4 75.9 - - + +
703A VAL* 1.4 53.6 + - + +
705A LYS* 3.3 17.8 - - + +
706A PHE* 2.9 33.4 + - + +
767A TYR* 5.2 14.8 - - + +
770A ASN* 6.5 1.1 - - + -
771A ALA* 4.7 20.9 - - + +
774A ILE* 5.7 9.0 - - + -
793A PHE* 6.5 0.7 - - + -
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Residues in contact with VAL 703 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
599A LEU* 4.2 26.7 - - + -
603A TRP* 5.2 5.4 - - + -
636A MET* 3.6 36.6 - - + -
699A ILE* 2.9 26.6 + - + +
700A PHE* 3.3 17.9 - - + +
702A ILE* 1.4 76.2 - - + +
704A TYR* 1.4 52.3 + - - +
706A PHE* 3.1 8.8 + - + +
707A CYS* 2.9 36.7 + - - +
775A PHE* 5.1 1.3 - - + -
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Residues in contact with TYR 704 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
443A MET* 3.6 26.2 - - - +
444A GLY* 5.7 0.5 - - - -
447A THR* 3.9 31.4 + - + +
598A LEU* 4.1 24.5 - - + -
700A PHE* 2.7 43.0 + + + +
701A ASP* 3.2 10.3 + - - +
703A VAL* 1.4 67.0 - - - +
705A LYS* 1.3 62.5 + - - +
707A CYS* 3.1 14.1 - - - -
708A LYS* 3.0 42.4 + - + +
711A LYS* 4.2 17.6 + - - -
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Residues in contact with LYS 705 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
701A ASP 3.0 11.5 + - - +
702A ILE* 3.3 19.5 - - + +
704A TYR* 1.3 78.3 - - - +
706A PHE* 1.3 62.8 + - - +
708A LYS* 3.3 18.8 + - - +
709A PHE* 3.2 54.9 + - + -
763A LYS* 4.1 5.3 - - - +
764A LEU* 5.5 1.1 - - + -
767A TYR* 3.6 42.2 + - - -
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Residues in contact with PHE 706 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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603A TRP* 5.3 4.7 - + - -
629A THR* 3.9 30.1 - - - -
632A LEU* 3.5 31.9 - - + -
633A HIS* 5.5 0.4 - - + -
636A MET* 4.7 13.2 - - + -
702A ILE* 2.9 19.3 + - + +
703A VAL* 3.1 12.5 + - + +
705A LYS* 1.3 74.0 - - - +
707A CYS* 1.4 57.8 + - - +
709A PHE* 3.1 10.9 + - + +
710A ILE* 3.0 41.9 + - + +
764A LEU* 5.0 23.1 - - + -
768A ILE* 3.8 35.4 - - + -
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Residues in contact with CYS 707 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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598A LEU* 5.7 5.8 - - - -
602A THR* 3.9 27.4 - - + +
603A TRP* 5.0 9.0 - - + -
700A PHE* 6.4 0.9 - - - -
703A VAL* 2.9 15.5 + - + +
704A TYR* 3.1 44.2 - - - -
706A PHE* 1.4 77.6 - - + +
708A LYS* 1.3 64.5 + - - +
710A ILE* 3.5 11.8 - - - +
711A LYS* 3.2 35.4 + - - +
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Residues in contact with LYS 708 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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704A TYR* 3.0 30.8 + - + +
705A LYS* 3.5 22.0 - - - +
707A CYS* 1.3 76.9 - - - +
709A PHE* 1.4 99.5 + - - +
711A LYS* 3.5 31.6 - - + +
712A SER* 4.1 3.3 + - - -
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Residues in contact with PHE 709 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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705A LYS* 3.2 52.3 + - + -
706A PHE* 3.1 10.1 + - + +
708A LYS* 1.4 96.7 - - - +
710A ILE* 1.4 58.9 + - + +
712A SER* 2.9 30.6 + - - -
760A LEU* 4.3 22.0 - - + -
763A LYS* 4.1 15.0 - - - -
764A LEU* 3.9 33.2 - - + -
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Residues in contact with ILE 710 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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602A THR* 5.4 9.0 - - - +
603A TRP* 4.4 18.6 - - + -
606A LEU* 4.1 27.8 - - + -
611A SER* 5.5 2.2 - - - -
629A THR* 3.3 27.8 - - + +
706A PHE* 3.0 41.1 + - + +
707A CYS* 3.2 14.5 + - - +
709A PHE* 1.4 76.2 - - + +
711A LYS* 1.3 63.4 - - + +
712A SER 3.3 1.2 + - - -
713A MET* 3.6 16.2 + - + +
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Residues in contact with LYS 711 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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443A MET* 5.2 6.3 - - - +
598A LEU* 5.1 6.0 - - - +
602A THR* 4.2 23.3 - - + -
605A ASP* 5.5 6.3 - - - +
704A TYR* 4.2 27.7 + - - -
707A CYS* 3.2 24.1 + - - +
708A LYS* 3.5 21.6 - - + +
710A ILE* 1.3 76.8 - - + +
712A SER* 1.4 60.0 - - - +
713A MET* 3.4 21.5 + - - +
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Residues in contact with SER 712 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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708A LYS 4.1 2.6 + - - -
709A PHE* 2.9 24.2 + - - -
711A LYS* 1.4 76.6 - - - +
713A MET* 1.4 69.5 + - - +
714A ARG 4.1 5.2 - - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il