Contacts of the helix formed by residues 64 - 106 (chain C) in PDB entry 5FN3
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 64 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62C ARG* 5.8 1.1 - - - -
63C SER* 1.3 86.0 - - - +
65C ALA* 1.3 60.1 + - - +
66C ARG* 4.6 2.0 - - + +
67C LEU* 3.3 33.8 - - + +
68C GLN* 2.9 32.9 + - - +
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Residues in contact with ALA 65 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62C ARG* 6.0 2.9 - - - +
63C SER 3.9 2.2 + - - -
64C ASP* 1.3 68.5 - - - +
66C ARG* 1.3 61.2 + - - +
68C GLN* 3.2 8.2 + - - +
69C TYR* 2.9 30.4 + - - +
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Residues in contact with ARG 66 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64C ASP* 3.5 3.1 - - + +
65C ALA* 1.3 77.7 - - - +
67C LEU* 1.3 63.6 + - - +
69C TYR* 3.2 19.2 + - + +
70C GLY* 2.9 27.1 + - - -
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Residues in contact with LEU 67 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60C THR* 4.6 16.8 - - + -
61C ASP 4.4 10.5 - - - +
63C SER* 5.7 2.0 - - - -
64C ASP* 3.3 34.7 + - + +
65C ALA 3.2 0.4 - - - -
66C ARG* 1.3 86.6 - - - +
68C GLN* 1.3 67.5 + - - +
70C GLY* 3.2 3.1 + - - -
71C LEU* 2.9 61.8 + - + +
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Residues in contact with GLN 68 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57C VAL* 4.5 15.2 - - - +
61C ASP 4.0 5.3 + - - +
62C ARG* 3.7 48.7 + - - +
63C SER 3.8 4.2 - - - +
64C ASP 2.9 22.9 + - - +
65C ALA* 3.2 9.2 + - - +
67C LEU* 1.3 82.0 - - - +
69C TYR* 1.3 57.9 + - - +
71C LEU* 3.2 20.5 + - + +
72C LEU* 2.9 39.7 + - + +
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Residues in contact with TYR 69 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
463B HIS* 5.5 13.9 - + - +
465B PHE* 5.9 7.2 - + - -
65C ALA 2.9 13.2 + - - +
66C ARG* 3.3 23.3 - - + +
68C GLN* 1.3 77.6 - - - +
70C GLY* 1.3 58.2 + - - +
72C LEU* 3.2 15.0 + - + +
73C ILE* 2.9 52.6 + - + +
205C PHE* 5.7 4.6 + - + +
206C LEU* 5.8 4.0 - - - +
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Residues in contact with GLY 70 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66C ARG* 2.9 14.2 + - - -
67C LEU* 3.2 4.7 + - - -
69C TYR* 1.3 79.9 - - - +
71C LEU* 1.3 57.8 + - - +
73C ILE* 3.2 10.7 + - - +
74C PHE* 2.9 29.4 + - - +
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Residues in contact with LEU 71 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53C TRP* 4.2 10.2 - - + +
56C LEU* 4.1 43.6 - - + +
57C VAL* 4.6 14.1 - - + +
60C THR* 5.5 7.2 - - + -
61C ASP 5.4 2.2 - - - +
67C LEU* 2.9 47.6 + - + +
68C GLN* 3.2 30.1 - - + +
70C GLY* 1.3 76.2 - - - +
72C LEU* 1.3 57.3 + - - +
74C PHE* 3.2 10.5 + - - +
75C GLY* 2.9 26.2 + - - -
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Residues in contact with LEU 72 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456B PHE* 4.4 4.7 - - - -
459B GLN* 3.8 29.8 - - + -
460B LEU* 3.8 21.3 - - + +
463B HIS* 4.2 26.5 - - + +
465B PHE* 4.3 16.6 - - + -
53C TRP* 3.5 28.9 - - + +
68C GLN* 2.9 24.7 + - + +
69C TYR* 3.3 15.5 - - + +
71C LEU* 1.3 76.7 - - - +
73C ILE* 1.3 56.5 - - - +
75C GLY* 3.2 2.3 + - - -
76C ALA* 2.9 29.6 + - - +
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Residues in contact with ILE 73 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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465B PHE* 5.7 3.4 - - + -
69C TYR* 2.9 42.1 + - + +
70C GLY* 3.4 11.2 - - - +
72C LEU* 1.3 78.8 - - + +
74C PHE* 1.3 59.0 + - - +
76C ALA* 3.2 4.7 + - - +
77C ALA* 2.9 30.2 + - + +
205C PHE* 3.8 48.2 - - + -
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Residues in contact with PHE 74 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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52C VAL* 4.7 7.9 - - + -
56C LEU* 4.5 33.2 - - + -
70C GLY 2.9 12.4 + - - +
71C LEU* 3.3 11.4 - - - +
73C ILE* 1.3 79.6 - - - +
75C GLY* 1.3 61.5 + - - +
77C ALA* 3.2 9.2 + - + +
78C VAL* 2.9 55.5 + - + +
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Residues in contact with GLY 75 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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456B PHE* 4.1 8.0 - - - -
49C ALA* 4.5 4.7 - - - +
52C VAL* 5.8 1.1 - - - -
53C TRP* 4.2 23.1 - - - -
71C LEU 2.9 13.0 + - - -
72C LEU 3.2 3.8 + - - -
74C PHE* 1.3 80.8 - - - +
76C ALA* 1.3 55.3 + - - +
78C VAL* 3.2 10.2 + - - +
79C SER* 2.9 29.1 + - - -
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Residues in contact with ALA 76 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456B PHE* 4.1 11.7 - - + -
460B LEU* 5.3 2.0 - - + -
465B PHE* 5.2 4.0 - - + -
466B TYR 5.3 4.9 - - - +
467B ILE* 4.7 5.2 - - + -
72C LEU 2.9 11.5 + - - +
73C ILE 3.4 9.0 - - - +
75C GLY* 1.3 75.9 - - - +
77C ALA* 1.3 56.8 + - - +
79C SER* 2.4 28.8 + - - -
80C VAL* 2.9 19.7 + - - +
201C SER* 5.4 2.5 - - - -
205C PHE* 3.4 30.1 - - + -
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Residues in contact with ALA 77 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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73C ILE* 2.9 15.5 + - + +
74C PHE* 3.2 14.6 + - + +
76C ALA* 1.3 75.9 - - - +
78C VAL* 1.3 58.4 + - + +
80C VAL* 3.2 9.6 + - - +
81C LEU* 2.9 43.5 + - + +
198C LEU* 5.2 12.0 - - + +
201C SER* 6.3 0.4 - - - -
205C PHE* 5.1 1.9 - - + -
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Residues in contact with VAL 78 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49C ALA* 4.4 7.6 - - - +
52C VAL* 4.5 19.1 - - + -
74C PHE* 2.9 50.2 + - + +
75C GLY* 3.4 9.6 - - - +
77C ALA* 1.3 77.0 - - + +
79C SER* 1.3 53.0 + - - +
81C LEU* 3.2 10.5 + - + +
82C LEU* 2.7 60.4 + - + +
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Residues in contact with SER 79 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456B PHE* 4.5 2.9 - - - -
467B ILE* 3.1 35.4 - - - +
45C SER* 4.7 1.1 + - - -
46C LEU* 5.4 4.9 - - - -
49C ALA* 3.4 26.7 - - - -
75C GLY 2.9 9.6 + - - -
76C ALA 2.4 25.4 + - - -
78C VAL* 1.3 77.0 - - - +
80C VAL* 1.3 53.6 + - - +
82C LEU* 3.4 2.5 - - - +
83C GLN* 2.6 44.5 + - - +
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Residues in contact with VAL 80 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
467B ILE* 4.4 2.2 - - - +
76C ALA* 2.9 14.2 + - + +
77C ALA* 3.4 10.3 - - - +
79C SER* 1.3 80.9 + - - +
81C LEU* 1.3 57.5 + - - +
83C GLN* 3.2 20.0 + - - +
84C GLU* 2.9 30.3 + - + +
197C HIS* 3.6 30.1 - - + +
198C LEU* 3.3 33.7 - - + +
201C SER* 3.3 31.4 - - - +
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Residues in contact with LEU 81 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77C ALA* 2.9 31.2 + - + +
78C VAL* 3.5 11.9 - - + +
80C VAL* 1.3 76.9 - - - +
82C LEU* 1.3 59.7 + - + +
84C GLU* 3.2 7.3 + - + +
85C VAL* 2.9 36.8 + - + +
194C VAL* 4.3 13.2 - - + -
198C LEU* 4.2 26.5 - - + -
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Residues in contact with LEU 82 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45C SER* 3.5 18.6 - - - +
48C LEU* 3.7 14.6 - - + -
49C ALA* 3.2 42.6 - - + +
52C VAL* 5.3 2.2 - - + -
78C VAL* 2.7 35.6 + - + +
79C SER 3.4 4.3 - - - +
81C LEU* 1.3 77.2 - - + +
83C GLN* 1.3 55.8 + - - +
85C VAL* 3.2 10.1 + - + +
86C PHE* 2.9 40.7 + - + -
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Residues in contact with GLN 83 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
467B ILE* 3.2 36.2 + - - +
42C TRP* 3.6 21.7 + - + +
45C SER* 3.6 22.2 - - - +
46C LEU* 6.2 0.7 - - - -
79C SER* 2.6 36.5 + - - +
80C VAL* 3.3 12.6 - - - +
82C LEU* 1.3 72.9 - - - +
84C GLU* 1.3 58.3 + - - +
86C PHE* 3.2 4.8 + - - +
87C ARG* 2.9 29.4 + - - +
125C PHE* 4.2 7.5 - - + -
171C HIS* 3.3 18.0 + - + -
197C HIS* 2.9 28.7 + - + +
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Residues in contact with GLU 84 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80C VAL* 2.9 19.7 + - + +
81C LEU* 3.5 9.6 - - + +
83C GLN* 1.3 77.5 - - - +
85C VAL* 1.3 57.9 + - + +
87C ARG* 3.2 33.9 + - - +
88C PHE* 2.9 28.2 + - - +
174C TRP* 5.1 0.2 - - - -
178C PHE* 4.1 12.9 - - + -
193C VAL* 3.6 14.5 - - - +
194C VAL* 3.5 39.8 - - + -
197C HIS* 3.5 34.0 - - + +
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Residues in contact with VAL 85 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81C LEU* 2.9 21.9 + - + +
82C LEU* 3.2 14.6 + - + +
84C GLU* 1.3 75.6 - - + +
86C PHE* 1.3 65.7 + - + +
88C PHE* 3.2 10.9 + - + +
89C ALA* 2.9 29.5 + - + +
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Residues in contact with PHE 86 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41C PHE* 3.1 47.5 - + + +
44C VAL* 3.4 36.6 - - + -
45C SER* 3.7 21.5 - - - -
48C LEU* 4.1 20.9 - - + -
82C LEU* 2.9 27.2 + - + +
83C GLN* 3.2 8.3 + - - +
85C VAL* 1.3 86.5 - - + +
87C ARG* 1.3 50.2 + - - +
89C ALA* 3.2 8.6 + - + +
90C TYR* 2.6 36.5 + - - +
125C PHE* 4.7 4.3 - - + -
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Residues in contact with ARG 87 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83C GLN 2.9 12.8 + - - +
84C GLU* 3.3 30.0 + - - +
86C PHE* 1.3 75.5 - - - +
88C PHE* 1.3 57.4 + - - +
90C TYR* 3.2 8.0 + - - +
91C TYR* 2.9 28.6 + - - +
121C SER* 5.3 2.4 + - - +
122C GLY* 3.7 10.3 - - - -
125C PHE* 3.4 47.3 - - + +
171C HIS* 3.0 32.0 + - - -
174C TRP* 3.2 32.5 - - - +
175C GLY* 3.8 11.8 - - - -
178C PHE* 3.6 34.8 - - + -
179C PHE* 4.3 8.1 - - + -
197C HIS* 4.8 0.6 - - - -
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Residues in contact with PHE 88 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84C GLU 2.9 10.4 + - - +
85C VAL* 3.3 13.7 - - + +
87C ARG* 1.3 76.2 - - - +
89C ALA* 1.3 60.0 + - + +
91C TYR* 3.2 21.0 + + - +
92C LYS* 2.9 42.0 + - + +
178C PHE* 3.4 28.9 - + + -
182C CYS* 4.3 14.8 - - + -
187C TYR* 6.3 3.1 - + - -
190C LEU* 4.9 14.4 - - + -
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Residues in contact with ALA 89 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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41C PHE* 4.3 12.6 - - + -
85C VAL* 2.9 15.3 + - + +
86C PHE* 3.4 12.8 - - + +
88C PHE* 1.3 80.7 - - - +
90C TYR* 1.3 55.8 + - - +
92C LYS* 3.2 10.3 + - - +
93C LEU* 2.9 36.9 + - + +
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Residues in contact with TYR 90 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34C ILE* 2.3 41.6 + - + +
37C ALA* 3.4 17.7 - - + +
38C GLY* 3.4 19.3 - - - -
41C PHE* 3.8 29.8 - + + -
86C PHE 2.6 19.5 + - - +
87C ARG* 3.3 10.3 - - - +
89C ALA* 1.3 73.0 - - - +
91C TYR* 1.3 59.0 - - - +
93C LEU* 3.2 8.1 + - + +
94C LEU* 2.9 69.4 + - + +
121C SER* 3.0 33.2 - - - +
125C PHE* 4.6 5.2 - + + -
179C PHE* 4.1 2.7 - + - -
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Residues in contact with TYR 91 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87C ARG 2.9 10.9 + - - +
88C PHE* 3.3 22.2 - + - +
90C TYR* 1.3 74.6 - - - +
92C LYS* 1.3 89.4 + - + +
94C LEU* 3.2 4.8 + - - +
95C LYS* 2.9 42.8 + - + +
114C ILE* 4.8 4.0 - - + +
178C PHE* 4.3 4.5 - - + -
179C PHE* 3.4 48.9 - + + -
182C CYS* 3.5 42.4 + - + -
183C GLU* 3.4 28.8 + - + -
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Residues in contact with LYS 92 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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88C PHE* 2.9 31.7 + - + +
89C ALA* 3.2 11.9 + - - +
91C TYR* 1.3 96.7 - - + +
93C LEU* 1.3 60.3 + - + +
95C LYS* 3.2 10.7 + - + +
96C LYS* 2.9 35.3 + - - +
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Residues in contact with LEU 93 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41C PHE* 4.4 23.1 - - + -
89C ALA* 2.9 20.6 + - + +
90C TYR* 3.2 13.4 + - + +
92C LYS* 1.3 80.3 - - + +
94C LEU* 1.3 61.4 + - + +
96C LYS* 3.2 11.3 + - + +
97C ALA* 2.9 29.0 + - - +
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Residues in contact with LEU 94 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34C ILE* 4.1 14.6 - - + -
37C ALA* 6.0 0.2 - - + -
90C TYR* 2.9 67.0 + - + +
91C TYR* 3.3 7.0 - - - +
93C LEU* 1.3 78.4 - - + +
95C LYS* 1.3 57.5 + - - +
97C ALA* 3.2 9.1 + - + +
98C ASP* 2.9 28.5 + - - +
114C ILE* 5.1 4.3 - - + -
117C MET* 4.0 37.5 - - + +
179C PHE* 3.5 24.7 - - + -
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Residues in contact with LYS 95 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91C TYR* 2.9 25.3 + - + +
92C LYS* 3.4 16.6 - - + +
94C LEU* 1.3 77.7 - - - +
96C LYS* 1.3 62.5 + - - +
98C ASP* 3.0 30.3 + - - +
99C GLU* 3.4 7.1 + - - +
114C ILE* 3.6 23.7 - - + +
183C GLU* 3.2 30.1 - - - +
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Residues in contact with LYS 96 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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92C LYS* 2.9 18.4 + - - +
93C LEU* 3.2 14.1 + - + +
95C LYS* 1.3 75.2 - - - +
97C ALA* 1.3 64.2 + - - +
99C GLU* 3.1 38.3 - - - +
100C GLY* 3.7 2.6 + - - -
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Residues in contact with ALA 97 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93C LEU 2.9 13.2 + - - +
94C LEU* 3.2 13.7 + - + +
96C LYS* 1.3 77.6 - - - +
98C ASP* 1.3 57.3 + - - +
100C GLY* 3.2 4.4 + - - -
101C LEU* 2.9 43.8 + - + +
117C MET* 6.4 0.7 - - - -
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Residues in contact with ASP 98 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94C LEU 2.9 12.4 + - - +
95C LYS* 3.0 31.1 + - + +
97C ALA* 1.3 75.6 - - - +
99C GLU* 1.3 63.4 + - - +
101C LEU* 4.7 2.2 - - - +
102C ALA* 3.0 33.3 + - - +
110C SER* 3.2 32.0 + - - -
111C PRO* 5.4 0.2 - - - +
112C ILE* 4.8 1.9 - - - +
114C ILE* 4.7 4.7 - - - +
117C MET* 3.6 25.2 - - + +
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Residues in contact with GLU 99 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95C LYS 3.4 5.6 + - - +
96C LYS* 3.1 41.0 - - - +
98C ASP* 1.3 78.4 - - - +
100C GLY* 1.3 63.9 + - - +
102C ALA* 4.6 2.0 - - - +
103C SER* 4.0 18.4 + - - -
104C LEU* 5.3 0.2 - - - +
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Residues in contact with GLY 100 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96C LYS 3.7 2.1 + - - -
97C ALA 3.2 6.3 + - - -
99C GLU* 1.3 86.3 - - - +
101C LEU* 1.3 62.7 + - - +
104C LEU* 3.3 34.7 + - - +
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Residues in contact with LEU 101 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30C LEU* 4.7 23.8 - - + -
97C ALA* 2.9 30.2 + - + +
98C ASP* 4.5 1.8 - - - +
100C GLY* 1.3 70.9 - - - +
102C ALA* 1.3 66.7 + - - +
104C LEU* 3.2 13.9 + - + -
105C SER* 3.6 23.1 + - - +
106C GLU* 4.3 2.6 + - - +
111C PRO* 5.0 11.8 - - + +
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Residues in contact with ALA 102 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98C ASP* 3.0 20.9 + - - +
99C GLU* 4.6 2.7 - - - +
101C LEU* 1.3 76.3 - - - +
103C SER* 1.3 62.2 + - - +
106C GLU* 3.6 3.2 - - - +
107C ASP 3.4 13.0 + - - -
108C GLY 4.0 6.0 + - - +
109C ARG 3.3 15.0 - - - +
110C SER* 3.4 41.0 - - - +
111C PRO* 4.4 4.4 - - - +
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Residues in contact with SER 103 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99C GLU 4.0 14.5 + - - -
101C LEU 3.4 0.6 - - - -
102C ALA* 1.3 78.2 - - - +
104C LEU* 1.3 68.0 + - - +
107C ASP* 3.2 26.0 - - - +
108C GLY* 4.3 11.3 + - - +
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Residues in contact with LEU 104 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99C GLU 5.3 0.2 - - - +
100C GLY* 3.3 25.8 - - - +
101C LEU* 3.2 7.8 + - + +
103C SER* 1.3 91.6 - - - +
105C SER* 1.3 63.6 - - - +
106C GLU 3.4 0.2 + - - -
107C ASP* 3.3 15.9 - - - +
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Residues in contact with SER 105 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78B GLY* 5.5 8.3 + - - -
101C LEU* 3.6 17.2 + - - +
104C LEU* 1.3 78.2 - - - +
106C GLU* 1.3 57.8 + - - +
107C ASP* 5.0 2.3 - - - +
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Residues in contact with GLU 106 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101C LEU 4.3 1.9 + - - +
102C ALA 3.6 6.3 + - - +
104C LEU 3.4 0.2 - - - -
105C SER* 1.3 78.8 - - - +
107C ASP* 1.3 73.4 + - - +
109C ARG* 3.3 23.9 + - + +
111C PRO* 4.8 17.0 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il