Contacts of the helix formed by residues 382 - 429 (chain I) in PDB entry 5G04
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 382 (chain I).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370I ALA* 4.0 1.7 - - - +
380I GLY* 3.0 18.4 + - - +
381I LEU* 1.3 71.2 - - - +
383I ALA* 1.3 65.9 + - - +
384I ALA* 4.6 2.2 - - + +
385I GLY* 3.7 19.3 - - - +
386I ILE* 2.9 29.4 + - - +
536I CYS* 4.7 6.5 - - - -
539I LYS* 3.3 36.4 + - - +
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Residues in contact with ALA 383 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370I ALA* 3.6 30.8 - - - +
371I SER* 5.2 2.0 - - - -
373I LYS* 5.1 12.9 - - + +
381I LEU 3.6 5.5 + - - -
382I ASP* 1.3 72.6 - - - +
384I ALA* 1.3 63.8 + - - +
386I ILE* 3.9 1.7 - - - +
387I GLU* 3.1 31.1 + - - +
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Residues in contact with ALA 384 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
382I ASP* 5.2 2.2 - - + -
383I ALA* 1.3 78.3 - - - +
385I GLY* 1.3 60.7 + - - +
387I GLU* 3.8 5.8 + - - +
388I GLU* 3.1 27.9 + - - +
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Residues in contact with GLY 385 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
382I ASP* 3.3 16.6 + - - +
383I ALA 3.3 0.8 - - - -
384I ALA* 1.3 76.4 - - - +
386I ILE* 1.3 53.9 + - - +
388I GLU* 2.9 12.5 + - - +
389I ALA 2.7 30.8 + - - -
532I ILE* 4.4 2.6 - - - +
536I CYS* 3.2 19.3 - - - -
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Residues in contact with ILE 386 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363I LEU* 3.6 31.9 - - + +
366I LEU* 3.6 24.5 - - + +
367I LYS* 3.8 20.6 - - + -
370I ALA* 3.8 19.5 - - + -
381I LEU* 3.5 32.1 - - + -
382I ASP 2.9 16.8 + - - +
383I ALA 4.0 1.8 - - - +
385I GLY* 1.3 70.0 - - - +
387I GLU* 1.3 55.5 + - - +
389I ALA* 2.9 6.7 + - - +
390I ILE* 2.8 35.0 + - + +
536I CYS* 3.4 18.5 - - + -
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Residues in contact with GLU 387 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367I LYS* 3.4 34.6 - - + +
383I ALA* 3.1 20.9 + - - +
384I ALA* 4.0 6.1 - - - +
386I ILE* 1.3 77.0 - - - +
388I GLU* 1.3 55.3 + - - +
390I ILE* 3.6 14.6 - - + +
391I THR* 3.3 27.6 + - - +
511I PRO 5.5 3.9 - - - +
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Residues in contact with GLU 388 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384I ALA* 3.1 16.9 + - - +
385I GLY* 2.9 14.5 + - - +
387I GLU* 1.3 73.7 - - - +
389I ALA* 1.3 62.5 + - - +
390I ILE 3.2 0.9 - - - -
391I THR* 2.7 32.2 + - + +
392I ALA* 3.0 8.3 + - - +
532I ILE* 3.8 23.3 - - + +
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Residues in contact with ALA 389 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363I LEU* 3.6 24.5 - - + -
385I GLY 2.7 15.1 + - - +
386I ILE* 2.9 11.0 + - - +
388I GLU* 1.3 71.1 - - - +
390I ILE* 1.3 64.2 + - - +
392I ALA* 3.1 7.8 - - - +
393I VAL* 3.1 23.7 + - - +
532I ILE* 3.6 21.6 - - - +
533I ILE* 4.1 16.9 - - + +
536I CYS* 4.4 4.9 - - + -
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Residues in contact with ILE 390 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
360I LEU* 3.6 23.3 - - + +
363I LEU* 3.7 30.9 - - + +
364I SER* 3.8 23.6 - - - +
367I LYS* 3.9 23.6 - - + +
386I ILE* 2.8 26.1 + - + +
387I GLU* 3.6 16.6 - - + +
389I ALA* 1.3 69.4 - - - +
391I THR* 1.3 70.4 + - + +
393I VAL* 2.9 5.0 + - - +
394I GLY* 2.7 21.0 + - - -
514I PHE* 4.7 10.8 - - + -
436O THR* 4.6 12.3 - - + -
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Residues in contact with THR 391 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
387I GLU 3.3 16.5 + - - +
388I GLU* 2.7 30.4 + - + +
390I ILE* 1.3 79.7 - - + +
392I ALA* 1.3 70.0 + - - +
394I GLY* 3.0 1.7 + - - -
395I SER* 2.9 28.1 + - - -
513I LEU 5.3 7.2 - - - +
514I PHE* 5.1 6.1 - - + -
515I PRO* 4.5 21.1 - - + +
532I ILE* 5.3 2.1 - - - +
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Residues in contact with ALA 392 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388I GLU 3.0 7.5 + - - +
389I ALA* 3.1 13.5 - - - +
391I THR* 1.3 82.0 + - - +
393I VAL* 1.3 59.9 + - - +
395I SER* 2.5 23.0 + - - -
396I PHE* 3.0 11.8 + - - +
517I TYR* 6.3 0.4 - - - -
525I VAL* 4.6 2.3 - - - +
528I ARG* 4.7 3.6 - - + +
529I MET* 3.7 32.9 - - + +
532I ILE* 4.0 18.2 - - + -
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Residues in contact with VAL 393 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356I SER* 3.4 28.0 - - - +
359I LEU* 3.8 23.6 - - + -
360I LEU* 3.6 20.9 - - + +
363I LEU* 3.4 20.4 - - + -
389I ALA 3.4 13.0 - - - +
390I ILE 2.9 9.2 + - - +
392I ALA* 1.3 71.6 - - - +
394I GLY* 1.3 66.9 + - - +
396I PHE* 2.9 18.0 + - - +
397I ILE* 3.2 12.5 + - + +
529I MET* 4.1 13.2 - - + -
533I ILE* 3.9 11.7 - - + -
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Residues in contact with GLY 394 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
360I LEU* 4.0 18.1 - - - +
390I ILE 2.7 17.6 + - - -
391I THR 3.5 2.7 - - - -
393I VAL* 1.3 73.9 - - - +
395I SER* 1.3 61.7 + - - +
397I ILE* 3.2 13.5 + - - +
398I LEU* 3.4 15.8 + - - +
514I PHE* 3.9 25.5 - - - -
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Residues in contact with SER 395 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391I THR 2.9 11.9 + - - -
392I ALA* 2.5 27.5 + - - -
394I GLY* 1.3 69.5 - - - +
396I PHE* 1.3 65.7 + - - +
398I LEU* 3.1 12.0 + - - +
399I LYS* 3.0 21.1 + - - +
514I PHE* 4.0 4.7 - - - +
515I PRO* 3.3 41.1 - - - +
517I TYR* 4.0 18.4 - - - -
525I VAL* 4.3 4.6 - - - +
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Residues in contact with PHE 396 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265I ILE* 3.5 18.4 - - + -
269I LEU* 4.1 18.6 - - + -
352I LEU* 4.1 8.3 - - + -
356I SER* 3.3 28.3 - - - -
392I ALA 3.5 9.0 - - - +
393I VAL* 2.9 12.4 + - + +
395I SER* 1.3 82.0 + - - +
397I ILE* 1.3 58.3 + - - +
399I LYS* 3.1 7.6 + - - +
400I ALA* 2.9 28.0 + - + +
522I LEU* 3.3 30.1 - - + -
525I VAL* 3.5 14.4 - - + -
526I LYS* 3.9 25.6 - - + -
529I MET* 3.4 34.5 - - + -
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Residues in contact with ILE 397 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
353I GLN* 3.6 17.0 - - + +
356I SER* 3.4 48.9 - - - +
357I GLU* 4.2 1.3 - - + -
360I LEU* 3.8 14.1 - - + -
393I VAL 3.2 14.8 + - - +
394I GLY 3.2 3.6 + - - +
396I PHE* 1.3 79.5 - - + +
398I LEU* 1.3 54.4 + - + +
400I ALA* 3.1 2.8 + - - +
401I ASN* 2.7 37.6 + - - +
440O GLN* 3.5 45.5 - - + +
444O MET* 3.8 10.8 - - + -
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Residues in contact with LEU 398 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394I GLY 3.5 15.3 - - - +
395I SER* 3.1 7.8 + - - +
397I ILE* 1.3 80.0 - - + +
399I LYS* 1.3 50.4 - - - +
401I ASN* 3.3 4.8 + - - +
402I GLU* 2.7 34.9 + - - +
514I PHE* 3.9 14.1 - - + +
515I PRO 4.6 4.0 - - - +
516I TYR* 4.0 24.2 - - + -
440O GLN* 4.2 5.8 - - + +
443O GLN* 3.5 52.9 - - + +
444O MET* 4.0 9.2 - - + +
447O SER* 3.6 28.7 - - - +
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Residues in contact with LYS 399 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395I SER 3.0 11.0 + - - +
396I PHE 3.1 9.2 + - - +
398I LEU* 1.3 75.4 - - - +
400I ALA* 1.3 59.3 + - - +
401I ASN 3.2 0.2 - - - -
402I GLU* 3.6 20.0 - - - +
403I LEU* 3.0 25.5 + - - +
478I TYR* 3.4 39.6 + - + -
489I PRO 5.7 0.2 + - - -
490I PRO* 4.8 7.7 - - - +
517I TYR* 3.4 29.7 + - + +
518I PRO* 4.7 7.1 - - - +
519I ARG 5.4 0.4 - - - +
520I LYS 3.4 15.7 - - - +
521I SER 4.6 2.9 - - - +
522I LEU* 4.1 13.9 - - + +
525I VAL* 3.6 29.8 - - + -
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Residues in contact with ALA 400 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
348I VAL* 4.1 6.3 - - + +
352I LEU* 3.7 19.1 - - + -
353I GLN* 3.7 22.1 - - - +
396I PHE* 2.9 15.7 + - + +
397I ILE* 3.5 10.5 - - - +
399I LYS* 1.3 75.7 - - - +
401I ASN* 1.3 59.2 + - - +
403I LEU* 3.2 25.3 - - - +
404I LEU* 3.3 9.2 + - - +
522I LEU* 4.0 15.0 - - + +
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Residues in contact with ASN 401 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
353I GLN* 4.2 9.7 + - - +
397I ILE 2.7 19.6 + - - +
398I LEU* 3.6 8.5 - - - +
400I ALA* 1.3 72.3 - - - +
402I GLU* 1.3 63.7 + - - +
403I LEU 3.2 0.2 - - - -
404I LEU* 3.0 30.2 + - - +
405I GLN* 3.4 10.1 - - - +
410O TRP* 4.9 0.4 - - - -
422O ILE* 4.9 3.9 - - - +
444O MET* 3.3 47.5 + - + +
447O SER* 5.2 4.5 - - - +
448O MET* 3.8 26.7 - - - +
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Residues in contact with GLU 402 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
398I LEU 2.7 21.5 + - - +
399I LYS* 3.6 26.9 - - - +
401I ASN* 1.3 72.3 - - - +
403I LEU* 1.3 60.5 + - - +
404I LEU 3.3 0.2 + - - -
405I GLN* 3.5 23.3 + - - +
406I VAL* 3.3 26.0 + - - +
478I TYR* 4.7 4.3 - - - +
490I PRO* 5.8 3.6 - - + -
498I TYR* 5.8 4.5 - - - +
447O SER* 5.4 5.7 - - - +
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Residues in contact with LEU 403 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
272I MET* 4.4 6.5 - - + -
348I VAL* 4.2 17.3 - - + -
399I LYS 3.0 15.1 + - - +
400I ALA* 3.2 15.5 - - - +
402I GLU* 1.3 78.0 - - - +
404I LEU* 1.3 55.0 + - - +
406I VAL* 3.1 11.4 - - + +
407I ILE* 2.9 51.2 + - + +
475I VAL* 4.6 8.7 - - + +
478I TYR* 3.6 41.4 - - + -
479I LEU* 5.0 7.6 - - + -
522I LEU* 3.8 26.2 - - + -
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Residues in contact with LEU 404 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
345I GLN* 3.7 35.2 - - + +
348I VAL* 4.5 19.3 - - + -
349I ILE* 3.5 22.0 - - + -
353I GLN* 4.2 11.0 - - - +
400I ALA 3.3 4.8 + - - +
401I ASN* 3.0 23.5 + - - +
403I LEU* 1.3 74.1 - - - +
405I GLN* 1.3 56.1 + - - +
406I VAL 3.1 1.8 - - - -
407I ILE* 3.3 6.1 + - + +
408I ASP* 2.8 35.3 + - - +
410O TRP* 3.5 42.0 - - + +
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Residues in contact with GLN 405 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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401I ASN* 3.4 14.1 - - - +
402I GLU* 3.6 23.7 + - - +
403I LEU 3.5 0.4 - - - -
404I LEU* 1.3 72.8 - - - +
406I VAL* 1.3 54.0 + - + +
408I ASP* 3.3 6.5 + - - +
409I SER* 2.7 37.7 + - - -
410O TRP* 5.0 6.5 - - + -
447O SER* 4.0 13.3 + - - -
448O MET* 3.0 30.5 - - + +
449O ASN* 2.7 46.8 + - + +
451O LEU* 4.8 11.0 - - + +
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Residues in contact with VAL 406 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
402I GLU 3.3 13.7 + - - +
403I LEU* 3.1 13.9 + - + +
404I LEU 3.1 0.2 - - - -
405I GLN* 1.3 74.8 - - + +
407I ILE* 1.3 56.7 + - - +
409I SER* 3.6 6.9 + - - -
410I SER* 2.7 38.3 + - - -
474I ARG* 4.0 38.3 + - + +
475I VAL* 4.1 7.6 - - + -
478I TYR* 3.7 37.9 - - + +
490I PRO* 4.9 11.4 - - + -
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Residues in contact with ILE 407 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
341I TYR* 4.0 22.4 - - + +
344I ILE* 3.9 13.9 - - + -
345I GLN* 3.6 32.8 - - + +
348I VAL* 3.8 23.6 - - + -
403I LEU* 2.9 44.8 + - + +
404I LEU* 3.8 7.9 - - + +
406I VAL* 1.3 70.5 - - - +
408I ASP* 1.3 54.6 + - - +
410I SER* 3.6 0.7 - - - -
411I MET* 2.7 39.0 + - + +
475I VAL* 3.8 29.8 - - + -
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Residues in contact with ASP 408 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
345I GLN* 4.2 11.8 + - - +
404I LEU 2.8 22.4 + - - +
405I GLN* 3.5 5.6 - - - +
407I ILE* 1.3 73.4 - - - +
409I SER* 1.3 52.7 + - - +
411I MET* 3.2 4.3 + - - +
412I LYS* 2.6 44.9 + - - +
410O TRP* 3.1 53.1 - - + +
413O SER* 4.2 14.6 - - - -
451O LEU* 4.2 16.9 - - + +
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Residues in contact with SER 409 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
405I GLN 2.7 18.9 + - - -
406I VAL 3.6 1.9 + - - -
408I ASP* 1.3 72.4 + - - +
410I SER* 1.3 54.7 + - - +
412I LYS* 3.0 6.9 + - - -
413I ASN* 2.6 48.0 + - - -
474I ARG* 2.7 33.1 + - - -
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Residues in contact with SER 410 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
341I TYR* 3.3 22.8 + - - -
406I VAL* 2.7 25.7 + - - -
407I ILE 3.6 2.7 - - - -
409I SER* 1.3 75.4 + - - +
411I MET* 1.3 62.5 + - - +
413I ASN* 3.8 1.7 - - - +
414I PHE* 3.0 46.5 + - - -
474I ARG* 3.9 22.1 + - - +
475I VAL* 3.9 13.8 - - - +
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Residues in contact with MET 411 (chain I).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
338I GLU* 5.4 9.0 - - + +
341I TYR* 4.3 24.8 - - + -
345I GLN* 4.9 7.0 - - - +
407I ILE* 2.7 23.6 + - + +
408I ASP* 3.7 4.5 - - - +
410I SER* 1.3 74.5 - - - +
412I LYS* 1.3 61.0 + - - +
414I PHE* 4.1 2.4 - - - +
415I LYS* 3.2 25.9 + - - +
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Residues in contact with LYS 412 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
408I ASP* 2.6 29.9 + - - +
409I SER* 3.6 8.1 - - - +
411I MET* 1.3 71.9 - - - +
413I ASN* 1.3 66.4 + - - +
415I LYS* 3.6 5.7 + - - +
416I ALA* 3.5 19.1 + - - +
447I PHE* 4.1 13.1 - - + -
413O SER* 6.0 3.6 - - - -
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Residues in contact with ASN 413 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
409I SER* 2.6 29.3 + - - +
410I SER* 3.8 4.3 - - - +
412I LYS* 1.3 70.9 - - - +
414I PHE* 1.3 59.9 + - + +
416I ALA* 3.3 6.9 + - - +
417I PHE* 3.0 29.4 + - - +
447I PHE* 3.3 27.5 - - - -
448I VAL* 5.7 0.2 - - - +
450I GLU* 5.3 3.2 - - - +
451I PHE* 3.4 28.9 - - + +
455I HIS* 3.2 31.9 + - - -
474I ARG* 4.0 8.7 - - - +
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Residues in contact with PHE 414 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
283I MET* 4.2 11.4 - - + -
337I ILE* 4.8 12.1 - - + -
338I GLU* 4.8 3.7 - - + +
341I TYR* 4.6 4.7 - + - -
410I SER* 3.0 44.3 + - - +
411I MET* 4.3 3.1 - - - +
413I ASN* 1.3 77.6 - - + +
415I LYS* 1.3 60.4 + - - +
417I PHE* 3.9 10.5 - + - -
418I PHE* 3.0 55.1 + + + +
451I PHE* 4.0 23.3 - + - -
455I HIS* 6.1 2.2 - + - -
456I PHE* 5.9 0.2 - + - -
472I VAL* 3.6 28.5 - - + -
473I GLU* 3.3 37.0 - - - -
474I ARG* 5.5 3.6 - - - -
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Residues in contact with LYS 415 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
338I GLU* 3.5 38.1 + - + +
411I MET 3.2 19.7 + - - +
412I LYS* 3.9 8.1 - - - +
413I ASN 3.3 0.2 - - - -
414I PHE* 1.3 77.2 - - - +
416I ALA* 1.3 60.1 + - - +
418I PHE* 4.3 1.7 - - - +
419I ARG* 3.3 41.8 + - + +
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Residues in contact with ALA 416 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
412I LYS 3.5 6.1 + - - +
413I ASN 3.3 8.1 + - - +
415I LYS* 1.3 76.7 - - - +
417I PHE* 1.3 62.2 + - - +
419I ARG* 3.7 13.8 - - - +
420I TRP* 3.3 21.0 + - - +
444I ASP* 3.5 23.6 - - - +
447I PHE* 3.9 23.3 - - + -
448I VAL* 3.8 9.0 - - + +
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Residues in contact with PHE 417 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
283I MET* 4.8 10.5 - - + -
304I PHE* 4.8 8.5 - + - -
413I ASN 3.0 17.1 + - - +
414I PHE* 4.1 9.4 - + - +
416I ALA* 1.3 76.3 - - - +
418I PHE* 1.3 83.2 + + - +
420I TRP* 3.4 32.0 + + - +
421I LEU* 3.0 38.2 + - + +
448I VAL* 4.0 19.9 - - + +
451I PHE* 3.4 32.3 - + + -
452I LEU* 3.6 22.2 - - + -
456I PHE* 3.9 21.1 - + - -
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Residues in contact with PHE 418 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
283I MET* 4.3 15.0 - - - -
330I LEU* 3.7 40.6 - - + +
333I LEU* 4.0 10.8 - - + -
334I GLY* 3.8 28.7 - - - -
337I ILE* 3.6 20.9 - - + -
338I GLU* 5.5 3.8 - - - +
414I PHE* 3.0 43.0 + + + +
415I LYS* 4.4 2.5 - - - +
417I PHE* 1.3 97.5 - + - +
419I ARG* 1.3 61.2 + - - +
421I LEU* 3.9 7.6 - - + +
422I TYR* 3.0 31.0 + - - +
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Residues in contact with ARG 419 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
415I LYS* 3.3 31.8 + - + +
416I ALA* 3.7 10.8 - - - +
418I PHE* 1.3 77.0 - - - +
420I TRP* 1.3 62.3 + - - +
422I TYR* 3.5 7.8 + - + +
423I VAL* 3.2 29.8 + - - +
439I LYS 4.1 16.0 + - - -
440I MET* 4.9 4.2 - - - -
441I THR* 4.6 10.1 + - - -
444I ASP* 3.8 29.1 + - - +
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Residues in contact with TRP 420 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
304I PHE* 3.8 20.0 - + + -
307I LEU* 3.7 28.4 + - + -
308I LEU* 3.6 57.8 + - + +
416I ALA 3.3 11.4 + - - +
417I PHE* 3.4 41.3 - + - +
419I ARG* 1.3 78.4 - - - +
421I LEU* 1.3 86.8 + - + +
423I VAL* 3.5 3.3 + - - +
424I ALA* 3.0 33.1 + - + +
427I ARG* 5.6 3.8 + - - +
440I MET* 3.8 32.9 - - + +
445I ILE* 5.1 4.0 - - + -
448I VAL* 4.4 13.5 - - + -
452I LEU* 5.1 3.4 - - + -
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Residues in contact with LEU 421 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
304I PHE* 4.6 9.0 - - + -
307I LEU* 5.1 2.0 - - + -
321I LEU* 3.9 35.2 - - + -
325I LEU* 5.7 2.9 - - + -
330I LEU* 3.9 22.7 - - + -
417I PHE* 3.0 37.6 + - + +
418I PHE* 3.9 10.5 - - + +
419I ARG 3.4 0.2 - - - -
420I TRP* 1.3 95.2 - - + +
422I TYR* 1.3 63.0 + - - +
424I ALA* 3.5 8.6 + - + +
425I MET* 3.2 42.0 + - + +
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Residues in contact with TYR 422 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
327I VAL* 3.8 28.5 - - + -
330I LEU* 4.1 16.7 - - + +
331I LYS* 3.0 43.7 + - + -
418I PHE 3.0 18.7 + - - +
419I ARG* 3.9 7.6 - - + +
420I TRP 3.4 0.2 - - - -
421I LEU* 1.3 74.1 - - - +
423I VAL* 1.3 70.4 + - + +
425I MET* 3.5 7.3 + - - +
426I LEU* 3.4 47.8 + - + +
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Residues in contact with VAL 423 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
419I ARG* 3.2 18.9 + - + +
420I TRP 3.9 3.6 - - - +
422I TYR* 1.3 81.4 - - + +
424I ALA* 1.3 66.6 + - - +
426I LEU* 3.3 26.2 + - + +
427I ARG* 3.6 30.1 + - + +
439I LYS 4.5 19.3 - - - +
440I MET* 4.6 23.8 - - + -
----------------------------------------------------------
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Residues in contact with ALA 424 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
307I LEU* 4.1 26.0 - - + -
420I TRP* 3.0 24.9 + - + +
421I LEU* 3.6 14.6 - - + +
422I TYR 3.4 0.2 - - - -
423I VAL* 1.3 78.3 - - - +
425I MET* 1.3 60.4 + - + +
426I LEU 3.5 0.2 + - - -
427I ARG* 3.5 22.9 + - - +
428I MET* 3.3 25.9 + - - +
----------------------------------------------------------
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Residues in contact with MET 425 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321I LEU* 3.8 38.4 - - + -
322I MET* 5.0 13.9 - - + +
325I LEU* 4.2 25.8 - - + +
326I THR 4.6 2.0 - - - +
327I VAL* 4.3 36.8 - - + -
330I LEU* 4.3 9.2 - - + -
421I LEU* 3.2 35.0 + - + +
422I TYR* 3.8 6.3 - - - +
423I VAL 3.3 0.2 - - - -
424I ALA* 1.3 76.2 - - + +
426I LEU* 1.3 63.4 + - - +
428I MET* 3.1 20.8 + - - +
429I THR* 3.3 17.2 + - + +
----------------------------------------------------------
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Residues in contact with LEU 426 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
327I VAL* 5.0 8.3 - - + -
422I TYR* 3.4 49.1 + - + +
423I VAL* 3.3 17.5 + - + +
425I MET* 1.3 78.1 - - - +
427I ARG* 1.3 58.3 + - + +
429I THR* 2.8 34.1 + - - +
----------------------------------------------------------
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Residues in contact with ARG 427 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27D GLU* 5.6 0.4 + - - -
307I LEU 5.9 0.8 + - - -
311I GLY* 4.3 14.8 - - - -
420I TRP* 5.6 4.0 + - - +
423I VAL* 3.6 29.5 + - - +
424I ALA* 3.5 25.5 + - - +
425I MET 3.3 0.6 - - - -
426I LEU* 1.3 77.5 - - + +
428I MET* 1.3 78.4 + - + +
429I THR 3.8 5.4 - - - +
440I MET* 5.9 2.6 - - - +
127O HIS* 4.8 13.9 + - + -
129O THR* 4.0 35.5 - - - +
130O SER* 4.2 21.0 + - - +
----------------------------------------------------------
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Residues in contact with MET 428 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
307I LEU* 5.8 6.3 - - + -
311I GLY* 3.6 25.4 - - - +
312I LYS 5.3 1.3 - - - +
313I ALA* 5.3 5.8 - - - -
318I GLN* 4.0 31.4 + - - +
322I MET* 3.7 32.8 - - + +
424I ALA 3.3 20.4 - - - +
425I MET* 3.1 10.4 + - - +
427I ARG* 1.3 94.6 - - + +
429I THR* 1.3 63.1 + - + +
430I GLU* 3.9 2.3 + - - +
127O HIS* 4.5 12.6 - - + +
----------------------------------------------------------
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Residues in contact with THR 429 (chain I).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
322I MET* 6.3 3.6 - - + -
327I VAL* 5.9 8.1 - - + -
425I MET 3.3 10.0 + - - +
426I LEU* 2.8 40.4 + - + +
427I ARG 3.8 6.0 - - - +
428I MET* 1.3 80.9 - - + +
430I GLU* 1.3 65.5 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il