Contacts of the helix formed by residues 91 - 119 (chain B) in PDB entry 5G49
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA 91 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145A TYR* 4.6 4.2 + - - +
73B LEU* 5.7 0.9 - - - +
77B LYS* 6.5 1.1 - - - +
89B ILE 3.5 2.3 + - - -
90B SER* 1.3 73.4 + - - +
92B GLU* 1.3 61.9 + - + +
93B ALA 3.4 0.2 - - - -
94B PRO* 3.5 13.0 - - - +
95B VAL* 3.6 14.9 - - - +
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Residues in contact with GLU 92 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119A ALA* 3.8 15.7 + - + +
142A LEU* 4.5 3.4 - - + -
145A TYR* 3.9 20.8 - - + +
146A ARG* 2.6 56.9 + - - +
90B SER* 3.0 15.3 + - - +
91B ALA* 1.3 79.8 - - + +
93B ALA* 1.3 65.1 + - - +
94B PRO 3.4 0.2 - - - -
95B VAL* 3.0 19.3 + - - +
96B VAL* 3.1 15.4 + - - +
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Residues in contact with ALA 93 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117A ILE* 4.2 12.8 - - + +
118A THR 4.5 2.7 - - - +
119A ALA* 4.5 8.6 - - - +
122A VAL* 4.0 22.6 - - + +
80B MET* 4.4 7.2 - - + -
89B ILE* 3.9 13.7 - - + -
90B SER* 3.3 9.7 + - - +
92B GLU* 1.3 77.0 - - - +
94B PRO* 1.3 70.7 - - + +
96B VAL* 3.1 6.9 + - - +
97B PHE* 3.1 25.2 + - - -
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Residues in contact with PRO 94 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73B LEU* 3.8 25.5 - - + +
76B ILE* 3.7 25.8 - - + +
77B LYS* 4.1 29.8 - - + -
80B MET* 4.5 5.1 - - - -
89B ILE* 4.0 7.0 - - + -
90B SER 3.1 16.4 - - - +
91B ALA* 3.5 12.3 - - - +
93B ALA* 1.3 92.0 - - + +
95B VAL* 1.3 55.6 + - - +
97B PHE* 3.3 1.1 + - + -
98B ALA* 2.9 30.3 + - - +
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Residues in contact with VAL 95 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141A TYR* 2.8 45.8 + - + +
142A LEU* 5.5 1.1 - - + -
145A TYR* 3.6 49.1 - - + +
69B HIS* 6.0 1.1 - - - +
73B LEU* 4.2 26.9 - - + -
91B ALA 3.6 16.6 - - - +
92B GLU* 3.0 11.1 + - - +
94B PRO* 1.3 78.0 - - - +
96B VAL* 1.3 64.2 + - + +
98B ALA* 3.4 7.4 + - - +
99B ARG 3.7 0.2 + - - -
1150B ACT 4.4 3.6 - - - +
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Residues in contact with VAL 96 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119A ALA* 4.0 24.7 - - + +
122A VAL* 3.8 25.1 - - + -
123A LEU* 4.1 19.7 - - + -
126A MET* 4.8 1.6 - - - -
138A LEU* 3.7 18.6 - - + +
141A TYR* 4.2 8.7 - - + -
142A LEU* 4.1 24.7 - - + -
92B GLU 3.1 12.3 + - - +
93B ALA* 3.1 8.5 + - - +
95B VAL* 1.3 76.4 - - - +
97B PHE* 1.3 57.4 + - - +
98B ALA 3.2 0.5 + - - -
99B ARG 3.3 3.1 + - - -
100B ALA* 2.9 23.3 + - + +
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Residues in contact with PHE 97 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97A TYR* 4.5 6.5 - + - -
98A ILE* 3.9 25.6 - - + -
101A ILE* 3.6 44.0 - - + -
102A THR* 3.4 26.9 - - - -
122A VAL* 4.2 19.5 - - + -
126A MET* 5.5 0.4 - - - -
76B ILE* 3.8 19.1 - - + -
80B MET* 3.8 28.3 - - + -
93B ALA 3.1 18.3 + - - -
94B PRO 3.3 6.7 + - - +
96B VAL* 1.3 76.3 - - - +
98B ALA* 1.3 55.6 + - - +
100B ALA* 4.0 6.5 - - + -
101B CYS* 2.7 43.3 + - - -
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Residues in contact with ALA 98 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69B HIS* 3.9 26.6 - - + +
70B SER 5.3 0.2 + - - -
71B LEU* 3.6 29.3 + - + +
73B LEU* 3.8 15.7 - - + -
76B ILE* 3.5 18.6 - - + +
94B PRO 2.9 17.2 + - - +
95B VAL 3.7 7.0 - - - +
96B VAL 3.2 0.6 - - - -
97B PHE* 1.3 78.3 - - - +
99B ARG* 1.3 59.3 + - - +
102B GLU* 3.6 6.2 + - - +
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Residues in contact with ARG 99 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137A PRO* 5.0 5.6 + - - +
138A LEU* 3.8 10.8 - - + -
141A TYR* 3.4 53.9 + - + +
59B GLU* 2.6 43.5 + - - +
68B ASN* 3.0 36.7 + - - +
69B HIS* 4.6 1.8 - - - +
95B VAL 3.7 2.2 + - - -
96B VAL 3.3 1.6 + - - -
98B ALA* 1.3 77.4 - - - +
100B ALA* 1.3 65.6 + - - +
101B CYS 3.2 0.2 - - - -
102B GLU* 3.1 18.9 + - - +
103B MET* 3.0 42.8 + - + +
1151B ACT 4.9 4.8 + - - -
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Residues in contact with ALA 100 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97A TYR* 3.3 30.2 + - + +
126A MET* 4.0 7.6 - - + -
134A TYR* 5.0 0.2 - - - -
138A LEU* 3.6 25.7 - - + +
96B VAL 2.9 19.3 + - - +
97B PHE* 3.8 10.5 - - + +
99B ARG* 1.3 76.7 - - - +
101B CYS* 1.3 57.0 + - - +
103B MET* 3.4 6.7 + - - +
104B PHE* 2.9 23.6 + - - +
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Residues in contact with CYS 101 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63A MET* 5.8 1.1 - - + -
94A VAL* 4.1 15.9 - - + -
97A TYR* 4.0 17.9 - - - -
98A ILE* 3.7 37.0 - - - -
71B LEU* 3.7 19.1 - - + -
76B ILE* 5.2 4.5 - - + -
97B PHE* 2.7 32.6 + - - +
98B ALA* 4.9 0.2 - - - -
100B ALA* 1.3 70.4 - - - +
102B GLU* 1.3 61.3 + - - +
104B PHE* 3.3 3.0 + - - +
105B ILE* 2.9 34.4 + - - +
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Residues in contact with GLU 102 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71A ILE* 4.0 29.4 - - + +
68B ASN 4.7 3.6 - - - +
69B HIS* 4.6 14.7 - - - -
70B SER* 4.7 7.7 + - - -
71B LEU* 3.8 6.8 - - + +
98B ALA 3.6 13.5 + - - +
99B ARG* 3.1 20.1 + - - +
101B CYS* 1.3 78.7 - - - +
103B MET* 1.3 65.6 + - + +
105B ILE* 3.2 4.3 + - - +
106B LEU* 2.9 43.2 + - + +
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Residues in contact with MET 103 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134A TYR* 3.9 32.3 - - + +
137A PRO* 4.0 14.6 - - + -
138A LEU* 3.8 15.0 - - - -
57B PHE* 3.4 62.0 - - + -
99B ARG* 3.0 37.5 + - + +
100B ALA* 3.7 6.3 - - - +
102B GLU* 1.3 78.5 - - + +
104B PHE* 1.3 62.3 + - - +
106B LEU* 3.2 8.4 + - + +
107B GLU* 3.0 18.7 + - - +
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Residues in contact with PHE 104 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90A ILE* 6.0 0.2 - - + -
93A CYS* 3.7 31.0 - - + -
94A VAL* 3.9 18.2 - - + -
97A TYR* 3.5 45.8 - + + -
134A TYR* 3.5 12.5 - - - +
100B ALA 2.9 17.8 + - - +
101B CYS* 3.7 4.0 - - - +
102B GLU 3.3 0.2 - - - -
103B MET* 1.3 76.0 - - - +
105B ILE* 1.3 66.4 + - - +
107B GLU* 3.3 1.0 + - - +
108B LEU* 3.0 41.5 + - + +
139B PHE* 3.8 32.1 - + - -
141B PHE* 4.2 2.0 - + - -
142B LEU* 3.8 26.5 - - + -
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Residues in contact with ILE 105 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68A VAL* 4.2 21.5 - - + +
71A ILE* 3.7 34.8 - - + -
72A MET* 3.9 25.4 - - + +
90A ILE* 4.4 9.8 - - + +
94A VAL* 3.5 34.1 - - + -
71B LEU* 4.5 7.2 - - + -
101B CYS 2.9 25.5 + - - +
102B GLU 3.6 3.4 - - - +
104B PHE* 1.3 77.4 - - - +
106B LEU* 1.3 63.6 + - - +
108B LEU* 4.3 2.9 - - - +
109B THR* 2.8 32.4 + - - +
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Residues in contact with LEU 106 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71A ILE* 3.8 26.5 - - + +
75A ILE* 3.8 38.0 - - + +
57B PHE* 4.8 11.7 - - + -
102B GLU* 2.9 40.7 + - + +
103B MET* 3.2 11.9 + - + +
105B ILE* 1.3 77.0 - - - +
107B GLU* 1.3 57.9 + - - +
109B THR* 3.8 1.4 - - - -
110B LEU* 3.0 30.7 + - - +
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Residues in contact with GLU 107 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133A ASP* 4.8 2.6 - - - +
134A TYR* 2.6 39.5 + - - +
55B THR* 2.6 40.3 + - + +
57B PHE* 4.1 8.2 - - + -
103B MET 3.0 15.6 + - - +
104B PHE 3.3 1.1 + - - +
106B LEU* 1.3 78.1 - - - +
108B LEU* 1.3 58.1 + - - +
110B LEU* 3.2 8.5 + - + +
111B ARG* 2.9 61.6 + - + +
138B ILE* 3.8 12.3 - - - +
139B PHE* 4.0 12.2 - - + -
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Residues in contact with LEU 108 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90A ILE* 3.5 29.2 - - + -
93A CYS* 3.9 20.0 - - + -
104B PHE* 3.0 41.7 + - + +
105B ILE* 4.3 2.9 - - - +
107B GLU* 1.3 76.8 - - - +
109B THR* 1.3 57.8 + - - +
111B ARG* 4.1 0.8 - - - +
112B SER* 2.7 41.7 + - - +
129B ILE* 4.3 4.9 - - + -
132B ALA* 4.3 5.8 - - + -
133B VAL* 4.0 16.8 - - + -
139B PHE* 3.6 35.8 - - + -
142B LEU* 4.4 2.2 - - + -
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Residues in contact with THR 109 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72A MET* 3.2 40.2 - - + +
75A ILE* 3.6 23.1 - - + -
76A LEU* 3.8 26.0 - - + -
90A ILE* 4.6 7.1 - - - +
105B ILE* 2.8 23.7 + - - +
106B LEU 3.8 2.7 - - - -
108B LEU* 1.3 78.0 - - - +
110B LEU* 1.3 56.8 + - - +
112B SER* 3.3 5.7 + - - -
113B TRP* 2.9 27.7 + - - +
124B LEU* 4.0 5.0 - - + +
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Residues in contact with LEU 110 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75A ILE* 4.1 36.1 - - + +
76A LEU* 5.5 0.7 - - - -
55B THR* 6.0 6.3 - - + +
106B LEU 3.0 17.9 + - - +
107B GLU* 3.2 8.9 + - + +
109B THR* 1.3 78.7 - - - +
111B ARG* 1.3 62.8 + - + +
113B TRP* 3.2 13.6 + - + +
114B ASN* 2.9 48.1 + - - +
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Residues in contact with ARG 111 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133A ASP* 5.6 1.0 + - - -
55B THR* 3.5 15.6 + - - +
107B GLU* 2.9 53.7 + - + +
108B LEU* 4.2 2.0 - - - +
110B LEU* 1.3 81.3 - - - +
112B SER* 1.3 61.8 + - - +
114B ASN* 3.4 24.0 + - - +
115B HIS* 3.5 10.0 + - - +
132B ALA* 3.7 23.0 - - + +
135B ARG* 5.4 4.0 + - - +
136B THR* 3.1 40.3 + - - +
138B ILE* 5.6 0.4 - - - +
139B PHE* 4.5 5.2 - - + -
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Residues in contact with SER 112 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90A ILE* 5.2 0.2 - - - +
108B LEU* 2.7 25.6 + - - +
109B THR* 3.6 4.7 - - - -
111B ARG* 1.3 77.4 - - - +
113B TRP* 1.3 62.3 + - - +
115B HIS* 3.0 11.1 + - - +
116B THR* 3.0 15.6 + - - -
124B LEU* 4.2 11.9 - - - -
128B ASP* 3.4 23.4 - - - +
129B ILE* 3.3 38.2 - - - +
132B ALA* 3.6 4.9 - - - +
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Residues in contact with TRP 113 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75A ILE 5.5 1.1 - - - -
76A LEU* 3.5 26.2 - - + -
77A PRO* 3.5 31.1 - - + +
80A ALA* 3.5 26.2 - - + -
81A LYS 4.6 0.7 - - - -
109B THR 2.9 18.5 + - - +
110B LEU* 3.6 13.7 - - + +
112B SER* 1.3 73.1 - - - +
114B ASN* 1.3 72.3 + - - +
116B THR* 3.2 28.0 + - + -
117B GLU* 2.9 60.0 + - + +
121B ARG 4.4 1.8 - - - -
122B ARG* 3.9 37.5 - - - -
124B LEU* 4.3 17.0 - - + +
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Residues in contact with ASN 114 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110B LEU* 2.9 36.6 + - - +
111B ARG* 3.5 23.1 - - - +
112B SER 3.2 0.2 - - - -
113B TRP* 1.3 79.2 - - - +
115B HIS* 1.3 57.1 + - - +
117B GLU* 3.4 13.8 + - - +
118B GLU* 3.0 41.0 + - - +
135B ARG* 5.7 1.6 - - - +
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Residues in contact with HIS 115 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111B ARG 3.5 5.6 + - - +
112B SER 3.0 10.3 + - - +
114B ASN* 1.3 77.2 - - - +
116B THR* 1.3 62.4 + - - +
118B GLU* 3.2 10.7 + - - +
119B ASN* 2.7 57.0 + - - -
127B ASN* 3.9 17.5 - - - -
128B ASP* 2.8 34.2 + - - +
131B ALA* 3.5 28.6 - - + +
132B ALA* 5.4 0.7 - - - +
135B ARG* 3.5 27.9 + - - +
----------------------------------------------------------
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Residues in contact with THR 116 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112B SER 3.0 11.3 + - - -
113B TRP* 3.2 26.0 + - + -
115B HIS* 1.3 75.5 - - - +
117B GLU* 1.3 63.4 + - - +
119B ASN* 3.0 13.7 + - - +
120B LYS 3.2 8.1 + - - -
121B ARG* 3.3 40.1 + - - +
123B THR 3.4 27.6 - - - +
124B LEU* 3.8 8.0 - - - -
128B ASP* 2.9 25.1 + - - +
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Residues in contact with GLU 117 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77A PRO* 4.6 4.3 - - - +
113B TRP* 2.9 61.5 + - + +
114B ASN* 3.9 11.6 + - - +
116B THR* 1.3 76.0 - - - +
118B GLU* 1.3 63.8 + - - +
120B LYS* 2.9 20.3 + - - +
121B ARG 4.4 6.5 - - - +
122B ARG* 4.8 4.8 + - - -
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Residues in contact with GLU 118 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114B ASN* 3.0 32.4 + - + +
115B HIS* 3.4 13.6 - - - +
116B THR 3.2 0.4 - - - -
117B GLU* 1.3 76.0 - - - +
119B ASN* 1.3 63.5 + - - +
120B LYS* 3.3 11.1 + - - +
135B ARG* 3.4 36.9 + - - -
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Residues in contact with ASN 119 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115B HIS* 2.7 49.1 + - - +
116B THR 3.0 7.3 + - - +
118B GLU* 1.3 82.8 - - - +
120B LYS* 1.3 71.6 + - - +
121B ARG* 3.2 34.3 + - - +
127B ASN* 5.7 0.3 + - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il