Contacts of the helix formed by residues 31 - 72 (chain R) in PDB entry 5GAH
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with VAL 31 (chain R).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
515A A 4.4 10.8 - - - +
516A C 4.9 3.8 - - - +
580A U 3.1 52.7 - - - +
581A C 3.4 5.4 - - - +
18R LEU* 4.3 0.2 - - - -
27R ALA* 3.0 22.6 + - + +
30R ARG* 1.3 79.0 - - + +
32R TYR* 1.3 67.9 + - - +
33R ARG* 3.2 17.9 - - + +
34R VAL* 3.4 18.4 - - + +
35R ALA* 3.1 23.0 + - - +
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Residues in contact with TYR 32 (chain R).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
581A C 3.7 17.4 + - - +
582A A 5.1 1.8 - - - +
1252A G 3.7 40.8 + + - -
13R ARG* 4.6 10.0 + - - +
14R HIS* 3.2 64.1 - + + +
17R ILE* 3.8 20.2 - - + +
18R LEU* 3.7 18.1 - - + +
30R ARG 3.6 2.6 + - - -
31R VAL* 1.3 75.4 - - - +
33R ARG* 1.3 73.6 + - + +
35R ALA* 3.7 0.9 - - - +
36R PHE* 2.9 56.5 + + + +
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Residues in contact with ARG 33 (chain R).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
578A G 4.1 32.4 + - - +
580A U 3.9 21.6 + - - -
581A C 3.0 37.6 + - - +
1252A G 2.9 94.1 + - - +
1253A A 3.0 25.1 + - - -
1254A A 5.0 1.2 + - - -
2018A G 5.9 1.1 - - - +
31R VAL* 3.2 3.8 - - + +
32R TYR* 1.3 87.5 - - + +
34R VAL* 1.3 68.0 + - + +
36R PHE* 3.3 13.6 + - - +
37R GLN* 3.6 4.7 + - - -
----------------------------------------------------------
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Residues in contact with VAL 34 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
580A U 5.6 2.5 - - - -
1252A G 5.5 0.4 - - - +
2018A G 3.9 13.7 - - - +
2019A A 3.7 38.8 - - - +
27R ALA* 4.1 7.6 - - + +
28R ARG* 3.7 37.5 - - + +
31R VAL* 3.4 15.7 - - + +
32R TYR 3.4 0.2 - - - -
33R ARG* 1.3 80.5 - - + +
35R ALA* 1.3 65.6 + - - +
36R PHE 3.1 0.7 + - - -
37R GLN* 3.2 19.9 + - - +
38R ALA* 3.0 16.9 + - + +
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Residues in contact with ALA 35 (chain R).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17R ILE* 4.3 4.0 - - + -
18R LEU* 3.7 20.4 - - + -
21R ALA* 4.0 7.4 - - + +
28R ARG 3.2 26.2 + - - +
31R VAL 3.1 19.6 + - - +
32R TYR 3.7 2.5 - - - +
34R VAL* 1.3 81.6 - - - +
36R PHE* 1.3 61.3 + - - +
38R ALA* 3.1 6.2 + - - +
39R VAL* 2.9 26.9 + - - +
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Residues in contact with PHE 36 (chain R).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1252A G 3.7 38.6 - + + -
13R ARG* 6.1 2.9 - - - -
17R ILE* 3.7 28.0 - - + +
32R TYR* 2.9 46.9 + + + +
33R ARG* 3.5 10.5 - - - +
34R VAL 3.1 0.4 + - - -
35R ALA* 1.3 73.8 - - - +
37R GLN* 1.3 65.2 + - - +
39R VAL* 2.9 14.2 + - - +
40R ILE* 3.0 43.0 + - + +
84S ARG* 3.9 30.1 - - - -
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Residues in contact with GLN 37 (chain R).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
563A A 3.5 34.0 + - - +
564A C 3.0 43.8 - - - +
1252A G 3.5 34.1 + - - +
2018A G 4.7 7.3 + - - +
33R ARG 3.6 1.1 + - - +
34R VAL* 3.2 27.0 + - - +
36R PHE* 1.3 80.5 - - - +
38R ALA* 1.3 64.1 + - - +
40R ILE* 3.1 7.8 + - - +
41R LYS* 2.9 26.6 + - - +
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Residues in contact with ALA 38 (chain R).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
533A G 4.7 1.6 + - - -
24R TYR* 3.8 17.8 - - + -
28R ARG* 3.4 37.5 + - + +
34R VAL* 3.0 10.8 + - + +
35R ALA* 3.2 14.4 - - - +
37R GLN* 1.3 80.3 - - - +
39R VAL* 1.3 58.1 + - - +
41R LYS* 3.5 5.9 + - - +
42R ALA* 2.9 29.8 + - - +
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Residues in contact with VAL 39 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17R ILE* 4.0 30.3 - - + +
20R GLN* 3.9 42.2 - - + +
21R ALA* 4.2 13.7 - - + +
24R TYR* 4.8 6.5 - - + +
35R ALA 2.9 15.5 + - - +
36R PHE 2.9 7.1 + - - +
38R ALA* 1.3 76.9 - - - +
40R ILE* 1.3 63.9 + - + +
42R ALA* 3.4 7.5 - - - +
43R GLY* 2.9 22.9 + - - -
73S LYS* 5.3 7.6 - - - +
75S VAL* 5.2 1.9 - - + +
----------------------------------------------------------
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Residues in contact with ILE 40 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36R PHE* 3.0 42.5 + - + +
37R GLN* 3.6 8.3 - - - +
39R VAL* 1.3 81.5 - - + +
41R LYS* 1.3 55.1 + - - +
43R GLY* 2.7 20.4 + - - -
44R GLN* 2.9 17.9 + - - +
75S VAL* 4.0 18.1 - - + +
77S PHE* 3.6 36.8 - - + -
84S ARG* 3.8 29.4 - - - +
86S GLN* 6.4 0.2 - - - +
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Residues in contact with LYS 41 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
531A C 3.7 8.3 + - - -
532A A 3.8 19.3 + - - +
533A G 4.6 2.7 - - - +
563A A 2.8 61.9 + - - +
564A C 3.9 11.7 - - - +
28R ARG* 5.9 1.6 - - - +
37R GLN 2.9 19.3 + - - +
38R ALA* 3.8 6.3 - - - +
40R ILE* 1.3 68.1 - - - +
42R ALA* 1.3 67.0 + - - +
44R GLN* 3.1 26.8 + - - +
45R TYR* 2.9 54.3 + - + -
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Residues in contact with ALA 42 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
533A G 3.6 19.1 + - - +
534A U 3.9 13.3 - - - +
24R TYR* 3.6 22.2 - - - +
38R ALA 2.9 18.8 + - - +
39R VAL* 3.4 7.4 - - - +
41R LYS* 1.3 75.2 - - - +
43R GLY* 1.3 64.0 + - - +
45R TYR* 3.3 2.3 + - - +
46R ALA* 2.9 26.3 + - - +
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Residues in contact with GLY 43 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39R VAL 2.9 9.3 + - - -
40R ILE 2.7 16.3 + - - -
42R ALA* 1.3 72.0 - - - +
44R GLN* 1.3 55.5 + - - -
46R ALA* 3.3 5.8 + - - +
47R TYR* 2.9 28.8 + - - +
73S LYS 4.8 3.3 - - - +
75S VAL* 3.7 32.7 + - - +
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Residues in contact with GLN 44 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
564A C 4.2 4.0 + - - +
40R ILE* 2.9 15.8 + - + +
41R LYS* 3.1 42.5 + - - +
43R GLY* 1.3 68.5 - - - +
45R TYR* 1.3 72.0 + - + +
47R TYR* 3.4 4.5 + - - +
48R ARG* 2.9 24.8 + - - +
75S VAL* 4.0 12.9 - - + +
77S PHE* 3.7 50.0 + - + +
----------------------------------------------------------
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Residues in contact with TYR 45 (chain R).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
531A C 5.2 0.2 + - - -
532A A 3.0 21.1 + - - -
533A G 3.1 52.0 - + - -
534A U 3.4 23.8 - - - +
561A G 2.6 22.7 + - - -
563A A 4.4 1.7 + - - -
3411A MG 4.2 12.6 - - - -
41R LYS* 2.9 54.7 + - + +
42R ALA 3.7 1.8 - - - +
44R GLN* 1.3 82.2 - - + +
46R ALA* 1.3 65.0 + - - +
48R ARG* 3.0 18.6 + - - +
49R ASP* 2.7 29.8 + - - +
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Residues in contact with ALA 46 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
534A U 3.4 25.7 + - - +
535A G 4.7 6.9 - - - +
42R ALA 2.9 18.4 + - - +
43R GLY* 3.5 6.1 - - - +
45R TYR* 1.3 75.5 - - - +
47R TYR* 1.3 64.7 + - - +
49R ASP* 2.9 11.8 + - - +
50R ARG* 3.0 30.8 + - - +
73S LYS 5.1 3.8 - - - +
----------------------------------------------------------
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Residues in contact with TYR 47 (chain R).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
990A A 3.4 14.2 + - - +
992A C 2.8 29.0 + - - -
993A G 4.3 2.0 - - - -
1156A A 3.8 25.8 - + - -
43R GLY 2.9 14.4 + - - +
44R GLN* 3.5 8.7 - - - +
46R ALA* 1.3 78.0 - - - +
48R ARG* 1.3 69.7 + - + +
49R ASP 3.1 1.0 + - - -
50R ARG* 3.3 27.5 + - - +
51R ARG* 3.3 49.1 + - - -
74S ILE* 3.7 22.9 - - + -
75S VAL 4.2 13.5 - - - +
76S LYS* 3.7 19.7 + - + -
----------------------------------------------------------
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Residues in contact with ARG 48 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
533A G 3.6 13.7 - - - +
560A C 3.0 31.0 + - - -
561A G 3.2 31.1 + - - -
976A G 5.9 2.7 - - - -
1156A A 4.1 20.9 - - - +
3411A MG 4.1 11.1 - - - -
44R GLN 2.9 15.3 + - - +
45R TYR* 3.4 23.6 + - - +
47R TYR* 1.3 84.7 - - + +
49R ASP* 1.3 81.5 + - - +
51R ARG* 3.2 11.4 + - - +
52R GLN* 3.0 37.5 + - + +
55R ARG* 5.2 1.9 + - - +
----------------------------------------------------------
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Residues in contact with ASP 49 (chain R).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
534A U 3.1 31.3 + - - +
535A G 3.6 19.4 - - - +
559A G 2.9 27.0 + - - -
45R TYR 2.7 12.7 + - - +
46R ALA 2.9 2.2 + - - +
48R ARG* 1.3 112.7 + - - +
50R ARG* 1.3 60.2 + - - +
51R ARG 3.2 0.4 - - - -
52R GLN* 3.6 10.9 + - + +
53R ARG* 2.9 29.5 + - - +
----------------------------------------------------------
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Residues in contact with ARG 50 (chain R).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
535A G 6.2 0.2 - - - -
993A G 2.8 30.3 + - - -
994A C 3.5 34.8 - - - +
46R ALA* 3.0 21.3 + - - +
47R TYR* 3.3 32.6 + - - +
49R ASP* 1.3 79.3 - - - +
51R ARG* 1.3 66.0 + - - +
53R ARG* 3.7 21.4 + - - +
54R LYS* 3.5 26.6 + - - +
72S VAL* 3.3 38.9 - - + +
73S LYS 3.9 7.7 + - - +
74S ILE* 3.4 34.2 - - - +
----------------------------------------------------------
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Residues in contact with ARG 51 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
990A A 5.0 1.0 + - - -
992A C 4.4 7.3 + - - -
993A G 2.8 45.0 + - - -
1156A A 3.3 85.4 + - + +
47R TYR* 3.3 55.3 + - - -
48R ARG 3.2 11.3 + - - +
50R ARG* 1.3 86.3 - - - +
52R GLN* 1.3 58.5 + - - +
54R LYS* 3.9 11.2 + - + +
55R ARG* 3.7 12.7 + - - +
----------------------------------------------------------
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Residues in contact with GLN 52 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
535A G 6.3 0.2 - - - -
559A G 3.2 24.3 + - - +
560A C 3.0 37.7 + - - +
977A G 5.4 3.4 + - - -
48R ARG* 3.0 35.1 + - - +
49R ASP* 3.5 15.7 + - + -
50R ARG 3.3 0.4 - - - -
51R ARG* 1.3 75.2 - - - +
53R ARG* 1.3 57.7 + - - +
54R LYS 3.1 2.0 - - - -
55R ARG* 2.6 52.4 + - + +
56R GLN* 3.0 24.8 + - - +
----------------------------------------------------------
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Residues in contact with ARG 53 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
535A G 3.2 43.4 + - - +
536A G 3.3 14.1 + - - -
994A C 3.4 13.3 + - - -
995A C 2.7 66.9 + - - +
49R ASP 2.9 18.7 + - - +
50R ARG* 3.9 30.6 + - - +
51R ARG 3.6 0.2 - - - -
52R GLN* 1.3 75.2 - - - +
54R LYS* 1.3 57.9 + - - +
55R ARG 3.1 0.2 + - - -
56R GLN* 3.1 13.5 + - - +
57R PHE* 3.0 46.0 + - + +
----------------------------------------------------------
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Residues in contact with LYS 54 (chain R).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
994A C 3.1 64.4 + - + +
995A C 2.4 52.1 + - - +
996A A 5.7 3.8 - - - +
1156A A 5.4 2.5 - - - +
50R ARG 3.5 13.4 + - - +
51R ARG* 3.9 13.7 - - + +
52R GLN 3.1 0.2 - - - -
53R ARG* 1.3 76.1 - - - +
55R ARG* 1.3 60.3 + - - +
57R PHE* 4.4 1.3 - - - +
58R ARG* 3.8 19.3 + - - +
61R TRP* 5.9 0.2 - - - -
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Residues in contact with ARG 55 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
976A G 3.9 7.8 + - - -
977A G 3.2 32.3 + - - -
1154A G 5.3 1.2 + - - -
1155A A 3.3 46.3 + - - +
1156A A 3.4 50.2 + - - +
48R ARG* 5.2 2.0 + - - +
51R ARG* 3.7 10.9 + - - +
52R GLN* 2.6 41.1 + - + +
54R LYS* 1.3 72.4 - - - +
56R GLN* 1.3 67.0 + - + +
57R PHE 3.1 1.7 + - - -
58R ARG* 3.3 5.2 + - - +
59R GLN* 2.9 25.7 + - - +
----------------------------------------------------------
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Residues in contact with GLN 56 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
535A G 3.6 37.9 + - - +
536A G 4.9 1.7 - - - +
559A G 3.1 52.6 + - - +
52R GLN* 3.0 29.1 + - + +
53R ARG* 3.8 9.2 + - - +
55R ARG* 1.3 75.6 - - + +
57R PHE* 1.3 70.7 + - + +
59R GLN* 3.1 17.5 - - - +
60R LEU* 2.9 22.7 + - - +
----------------------------------------------------------
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Residues in contact with PHE 57 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
536A G 4.0 33.4 - - - -
537A G 5.1 0.2 - - - -
995A C 3.2 63.3 - + - +
3K THR* 3.3 38.1 - - + -
53R ARG* 3.0 28.9 + - + +
54R LYS 4.9 1.1 - - - +
56R GLN* 1.3 81.7 - - + +
58R ARG* 1.3 68.3 + - - +
60R LEU* 2.8 27.1 + - + +
61R TRP* 2.9 31.0 + + + -
----------------------------------------------------------
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Residues in contact with ARG 58 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
997A G 3.2 28.9 + - - +
998A C 3.5 24.6 + - - -
1153A C 3.7 16.8 + - - -
1154A G 2.6 36.7 + - - +
1155A A 5.3 5.2 + - - -
54R LYS 3.8 18.3 + - - +
55R ARG* 3.3 4.4 + - - +
57R PHE* 1.3 77.6 - - - +
59R GLN* 1.3 64.3 + - - +
61R TRP* 3.3 25.2 + - + +
62R ILE* 3.0 30.8 + - + +
92R ARG* 3.3 32.2 - - - +
----------------------------------------------------------
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Residues in contact with GLN 59 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
559A G 5.7 0.3 + - - -
1008A A 5.3 5.5 + - - -
1009A A 2.8 57.6 + - - +
1154A G 4.5 8.5 + - - +
55R ARG 2.9 13.7 + - - +
56R GLN* 3.1 22.0 - - - +
58R ARG* 1.3 77.4 - - - +
60R LEU* 1.3 63.1 + - - +
62R ILE* 3.0 13.1 + - - +
63R ALA* 3.0 20.3 + - - +
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Residues in contact with LEU 60 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3K THR* 4.2 15.9 - - + -
4K PHE 5.0 0.2 - - - +
44K TYR* 3.7 22.7 - - + +
45K THR* 5.5 1.3 - - + -
46K PRO* 3.6 38.6 - - + -
56R GLN 2.9 11.7 + - - +
57R PHE* 2.8 26.1 + - + +
59R GLN* 1.3 68.4 - - - +
61R TRP* 1.3 67.5 + - - +
63R ALA* 3.0 15.4 + - - +
64R ARG* 3.0 40.4 + - + +
----------------------------------------------------------
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Residues in contact with TRP 61 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
995A C 3.8 29.4 - - - -
996A A 3.9 15.3 - - - -
997A G 4.6 4.9 - - - -
3K THR* 2.8 33.6 + - + -
57R PHE* 2.9 35.1 + + + -
58R ARG* 3.3 29.8 - - + +
60R LEU* 1.3 77.1 - - + +
62R ILE* 1.3 59.0 + - - +
64R ARG* 3.2 3.8 + - - +
65R ILE* 2.9 33.1 + - - +
92R ARG* 4.0 22.9 - - + +
93R LYS* 3.5 53.7 + - + +
96R ALA* 3.9 18.7 - - + +
----------------------------------------------------------
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Residues in contact with ILE 62 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1009A A 3.7 25.8 - - - +
1010A A 3.8 14.4 - - - -
1153A C 3.9 21.3 - - - +
1154A G 4.0 5.2 - - - +
58R ARG* 3.0 40.5 + - + +
59R GLN* 3.0 7.8 + - - +
61R TRP* 1.3 80.4 - - - +
63R ALA* 1.3 63.7 + - - +
65R ILE* 3.8 2.6 - - - +
66R ASN* 2.9 22.0 + - - +
76R TYR* 3.7 36.3 - - + +
92R ARG* 3.9 13.7 - - + -
----------------------------------------------------------
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Residues in contact with ALA 63 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1009A A 4.5 11.9 + - - -
1010A A 3.8 15.5 - - - +
39K LYS* 5.1 7.4 - - - +
44K TYR* 4.0 28.5 - - + -
59R GLN 3.0 11.5 + - - +
60R LEU* 3.0 10.5 + - - +
62R ILE* 1.3 75.2 - - - +
64R ARG* 1.3 64.4 + - - +
66R ASN* 2.9 15.1 + - - +
67R ALA* 3.0 13.3 + - - +
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Residues in contact with ARG 64 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3K THR* 3.5 18.4 - - - +
4K PHE* 2.5 49.3 + - - +
5K THR* 4.3 0.4 - - - +
41K LYS 5.5 0.4 - - - -
42K ALA* 3.2 28.1 + - + +
43K GLU 4.0 5.1 + - - -
44K TYR* 3.2 25.4 + - + +
45K THR* 3.4 24.2 + - - +
60R LEU* 3.0 32.7 + - + +
61R TRP* 3.6 7.0 - - - +
63R ALA* 1.3 77.8 - - - +
65R ILE* 1.3 64.3 + - - +
67R ALA* 3.0 8.1 + - - +
68R ALA* 2.9 25.4 + - - +
96R ALA* 4.2 19.4 + - + +
99R ALA* 5.2 2.7 - - + -
100R VAL* 4.3 7.7 - - - +
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Residues in contact with ILE 65 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61R TRP 2.9 19.0 + - - +
62R ILE 3.8 3.6 - - - +
64R ARG* 1.3 75.5 - - - +
66R ASN* 1.3 63.4 + - - +
68R ALA* 3.9 4.4 - - - +
69R ALA* 2.9 23.5 + - + +
76R TYR* 3.4 24.9 - - + -
79R PHE* 4.2 23.8 - - + -
92R ARG* 3.4 33.9 - - + +
95R LEU* 3.3 35.2 - - + +
96R ALA* 3.8 15.3 - - - +
99R ALA* 5.0 1.1 - - + -
106R PHE* 4.2 6.2 - - + -
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Residues in contact with ASN 66 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1010A A 3.3 23.7 + - - +
1011A G 2.5 28.3 + - - -
62R ILE 2.9 14.8 + - - +
63R ALA 3.2 9.0 - - - +
65R ILE* 1.3 77.4 - - - +
67R ALA* 1.3 56.1 + - - +
69R ALA* 3.5 1.6 + - - +
70R ARG* 2.9 51.5 + - - +
76R TYR* 3.4 28.1 + - + +
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Residues in contact with ALA 67 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34K ARG* 5.5 1.3 - - - +
39K LYS 3.2 26.9 - - - +
40K HIS* 3.3 19.9 - - - +
41K LYS 3.8 12.8 - - - +
42K ALA* 4.1 1.1 - - - -
44K TYR* 6.1 0.2 - - + -
63R ALA 3.0 11.0 + - - +
64R ARG* 3.0 8.5 + - - +
66R ASN* 1.3 73.6 - - - +
68R ALA* 1.3 61.3 + - - +
70R ARG* 3.3 8.0 + - - +
71R GLN* 3.0 31.6 + - - +
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Residues in contact with ALA 68 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42K ALA* 4.0 14.9 - - + +
64R ARG 2.9 15.2 + - - +
67R ALA* 1.3 76.4 - - - +
69R ALA* 1.3 64.1 + - - +
71R GLN* 3.0 18.7 + - - +
72R ASN* 3.0 18.8 + - - +
99R ALA* 3.7 21.5 - - + +
106R PHE* 3.3 26.2 - - + -
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Residues in contact with ALA 69 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65R ILE 2.9 18.9 + - - +
66R ASN* 3.8 4.7 - - - +
68R ALA* 1.3 75.7 - - - +
70R ARG* 1.3 57.7 + - - +
72R ASN* 3.4 6.1 - - - -
73R GLY 3.2 6.9 + - - -
74R ILE* 2.9 45.8 + - + +
76R TYR* 4.8 3.8 - - - -
79R PHE* 4.3 21.8 - - + -
106R PHE* 3.4 13.6 - - + -
110R VAL* 4.7 0.9 - - - -
----------------------------------------------------------
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Residues in contact with ARG 70 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1011A G 3.6 13.7 + - - -
1012A U 2.7 37.0 + - - -
34K ARG* 4.8 18.4 - - - +
66R ASN* 2.9 35.3 + - - +
67R ALA* 3.7 6.3 - - - +
68R ALA 3.1 0.4 - - - -
69R ALA* 1.3 74.4 - - - +
71R GLN* 1.3 61.8 + - - +
72R ASN 3.0 1.3 - - - -
73R GLY* 2.8 19.4 + - - +
74R ILE 3.4 13.1 - - - +
75R SER* 3.5 27.3 - - - +
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Residues in contact with GLN 71 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35K ARG* 5.9 1.8 - - - +
40K HIS* 3.6 31.4 + - - +
41K LYS* 5.2 2.8 - - - +
42K ALA* 5.6 4.3 - - + +
67R ALA 3.0 18.2 + - - +
68R ALA* 3.3 11.7 - - - +
70R ARG* 1.3 76.7 - - - +
72R ASN* 1.3 65.2 + - - +
73R GLY 3.5 0.5 + - - -
----------------------------------------------------------
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Residues in contact with ASN 72 (chain R).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68R ALA* 3.0 22.0 + - - +
69R ALA 3.4 6.5 - - - +
70R ARG 3.0 0.8 - - - -
71R GLN* 1.3 82.2 - - - +
73R GLY* 1.3 51.6 + - - +
74R ILE* 4.9 0.2 - - - -
103R LYS* 5.2 3.4 + - - +
106R PHE* 3.9 16.6 - - - +
107R THR* 3.5 34.0 + - - +
110R VAL* 3.7 29.7 - - + +
114R LYS* 2.6 34.0 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il