Contacts of the helix formed by residues 244 - 295 (chain U) in PDB entry 5GJQ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 244 (chain U).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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424P LEU* 4.0 29.5 - - + +
242U LEU* 2.7 33.5 + - + +
243U GLN* 1.3 73.3 - - - +
245U PHE* 1.3 66.8 + - - +
247U LYS* 3.0 14.4 + - - +
248U ALA 3.1 9.7 + - - -
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Residues in contact with PHE 245 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
424P LEU* 5.2 1.8 - - - -
425P LEU* 4.0 18.2 - - + -
428P TRP* 3.1 61.9 - + + -
238U PRO* 4.9 0.4 - - + -
239U ASP 4.3 12.8 - - - -
240U VAL 3.8 24.2 - - - +
241U SER* 5.4 0.7 - - - -
242U LEU* 3.1 4.3 + - + +
244U GLU* 1.3 73.3 - - - +
246U VAL* 1.3 69.9 + - - +
247U LYS 2.6 5.2 + - - -
248U ALA* 2.7 20.0 + - + -
249U PHE* 3.1 38.2 + + + +
306V THR* 6.2 2.7 - - - -
310V LYS* 5.7 4.9 - - - -
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Residues in contact with VAL 246 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
326T GLU 6.1 1.3 - - - +
241U SER* 3.6 30.1 - - - +
242U LEU 2.9 22.4 + - - +
243U GLN* 4.3 11.7 - - + +
245U PHE* 1.3 76.5 - - - +
247U LYS* 1.3 64.1 + - + +
249U PHE* 4.5 2.5 - - - +
250U TYR* 3.2 48.2 + - + +
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Residues in contact with LYS 247 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
421P PRO* 4.8 0.7 - - - -
243U GLN* 3.3 41.8 + - - +
244U GLU 3.0 8.0 + - - +
245U PHE 2.6 5.3 + - - -
246U VAL* 1.3 81.0 - - + +
248U ALA* 1.3 54.8 + - - +
250U TYR* 3.0 7.2 + - + +
251U LEU* 2.7 42.9 + - + +
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Residues in contact with ALA 248 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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421P PRO* 3.3 41.8 - - + +
424P LEU* 4.1 11.4 - - + +
425P LEU* 3.8 16.8 - - + -
244U GLU 3.1 11.3 + - - +
245U PHE* 2.7 19.2 + - + +
247U LYS* 1.3 70.5 - - - +
249U PHE* 1.3 65.0 + - - +
251U LEU* 3.1 2.8 + - - +
252U LYS* 2.9 22.5 + - - +
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Residues in contact with PHE 249 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
425P LEU* 3.7 12.7 - - + +
428P TRP* 5.5 4.0 - + - -
245U PHE* 3.1 32.8 + + + +
246U VAL* 4.5 4.5 - - - +
248U ALA* 1.3 78.2 - - - +
250U TYR* 1.3 60.5 + + + +
252U LYS* 3.1 3.0 + - + +
253U THR* 2.7 40.6 + - - -
256U GLN* 5.5 3.6 - - - -
234V TYR* 5.3 2.7 - + - -
299V CYS 4.9 0.2 - - - -
302V ALA* 3.1 54.1 - - + -
303V MET* 3.6 35.0 - - + -
306V THR* 3.7 18.8 - - - -
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Residues in contact with TYR 250 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
467S TYR 4.6 14.8 - - - +
468S SER* 4.4 15.0 - - - -
469S THR* 5.1 9.4 - - + +
470S ARG* 5.1 16.1 + - - +
327T ASP* 5.2 9.5 - - - +
331T PRO* 5.5 5.9 + - - +
335T LEU* 6.2 4.0 - - + -
246U VAL* 3.2 37.2 + - + +
247U LYS* 3.0 9.3 + - + +
249U PHE* 1.3 89.8 - + + +
251U LEU* 1.3 61.6 + - - +
253U THR* 2.8 31.7 - - + +
254U ASN* 3.3 12.1 + - - +
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Residues in contact with LEU 251 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
421P PRO* 4.1 25.6 - - + -
397Q TYR* 4.9 0.7 + - - -
362R LYS* 4.8 16.6 - - + -
467S TYR* 5.3 5.2 - - + -
247U LYS* 2.7 23.4 + - + +
248U ALA 3.8 3.4 - - - +
250U TYR* 1.3 73.3 - - - +
252U LYS* 1.3 71.3 + - - +
254U ASN* 3.9 17.2 - - + +
255U ASP* 3.8 11.6 + - - +
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Residues in contact with LYS 252 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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421P PRO* 5.0 7.1 - - + +
422P ASN* 3.2 36.2 - - - +
425P LEU* 4.0 3.6 - - + -
394Q ASP* 5.3 3.4 + - - -
248U ALA 2.9 16.4 + - - +
249U PHE* 3.5 5.8 - - + +
251U LEU* 1.3 88.5 + - - +
253U THR* 1.3 65.8 + - - +
254U ASN 3.1 1.6 - - - -
255U ASP* 3.0 35.5 + - - +
256U GLN* 3.2 14.2 + - + +
234V TYR* 3.2 39.7 - - + -
237V HIS* 5.7 4.0 + - - +
238V CYS* 3.5 26.5 - - - -
298V GLN* 5.5 1.8 - - - +
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Residues in contact with THR 253 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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469S THR* 3.5 24.9 - - + +
473S GLN* 4.3 12.6 + - - +
335T LEU* 5.8 0.3 - - - +
249U PHE* 2.7 28.3 + - - +
250U TYR* 2.8 36.1 - - + +
252U LYS* 1.3 71.3 - - - +
254U ASN* 1.3 62.9 + - - +
256U GLN* 3.0 18.7 + - - +
257U MET* 3.0 24.1 + - + +
299V CYS* 4.4 6.2 - - - -
303V MET* 4.1 16.1 - - - +
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Residues in contact with ASN 254 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397Q TYR* 2.9 21.6 + - - +
467S TYR* 2.8 57.0 + - + +
469S THR* 2.3 29.2 + - - -
472S PRO* 5.2 0.2 - - - +
250U TYR* 3.3 12.5 + - - +
251U LEU* 3.9 19.3 - - + +
252U LYS 3.1 0.6 - - - -
253U THR* 1.3 81.7 - - - +
255U ASP* 1.3 54.8 + - - +
257U MET* 2.9 27.9 + - - +
258U VAL* 3.0 12.6 + - - +
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Residues in contact with ASP 255 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394Q ASP* 3.8 16.2 - - - +
396Q THR* 3.2 31.5 + - - +
397Q TYR* 3.0 17.4 + - + -
251U LEU 3.8 3.3 + - - +
252U LYS* 3.0 26.8 + - - +
254U ASN* 1.3 77.8 - - - +
256U GLN* 1.3 63.0 + - + +
258U VAL* 3.4 2.1 + - - +
259U VAL* 3.1 21.9 + - - +
237V HIS* 5.0 1.7 + - - +
238V CYS* 3.6 30.1 - - - +
241V ASN* 4.6 7.6 - - - -
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Residues in contact with GLN 256 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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249U PHE* 5.5 3.3 - - - -
252U LYS* 3.2 12.5 + - + +
253U THR* 3.0 23.4 + - - +
255U ASP* 1.3 74.2 - - - +
257U MET* 1.3 59.1 + - - +
259U VAL* 3.4 3.5 + - - +
260U VAL* 2.8 34.9 + - - +
234V TYR* 4.3 3.1 + - - -
237V HIS* 3.9 11.7 - - + +
241V ASN* 5.1 0.2 - - - -
295V ASN* 2.7 51.5 + - - +
298V GLN* 3.2 28.2 + - - +
299V CYS* 2.7 41.1 - - - +
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Residues in contact with MET 257 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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469S THR* 5.8 0.9 - - - +
473S GLN* 4.5 28.0 - - + +
476S PHE* 4.8 22.3 - - + -
342T TYR* 3.6 39.0 - - + +
253U THR* 3.0 21.7 + - + +
254U ASN* 2.9 13.9 + - - +
256U GLN* 1.3 77.5 - - - +
258U VAL* 1.3 55.5 + - + +
260U VAL* 3.1 19.2 + - + +
261U TYR* 2.6 38.4 + - - +
299V CYS* 4.3 17.5 - - - -
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Residues in contact with VAL 258 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396Q THR* 4.4 5.6 - - + -
397Q TYR* 2.7 62.8 - - + -
400Q ALA* 3.6 26.0 - - + -
365R GLN* 3.9 7.6 - - - +
369R THR* 5.9 0.7 - - - +
467S TYR* 5.2 4.0 - - - +
476S PHE* 6.2 3.8 - - + -
254U ASN 3.0 6.2 + - - +
255U ASP 3.6 6.1 - - - +
257U MET* 1.3 78.0 - - + +
259U VAL* 1.3 61.3 + - - +
261U TYR* 3.5 7.6 + - - +
262U LEU* 3.1 27.4 + - + +
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Residues in contact with VAL 259 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396Q THR* 3.9 11.7 - - + -
255U ASP 3.1 17.0 + - - +
256U GLN 3.6 2.7 - - - +
257U MET 3.2 0.2 - - - -
258U VAL* 1.3 74.4 - - - +
260U VAL* 1.3 58.2 + - - +
262U LEU* 3.3 11.2 + - - +
263U ALA* 3.1 26.2 + - - +
241V ASN* 3.3 28.0 - - + +
245V VAL* 4.7 1.6 - - + -
291V LEU* 3.3 43.1 - - + +
295V ASN* 2.9 26.9 - - - +
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Residues in contact with VAL 260 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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480S ILE* 6.5 0.7 - - + -
342T TYR* 6.4 2.9 - - + -
346T LEU* 5.3 4.0 - - + -
256U GLN* 2.8 26.1 + - + +
257U MET* 3.5 23.3 - - + +
259U VAL* 1.3 72.4 - - - +
261U TYR* 1.3 56.9 + - - +
262U LEU 2.9 10.7 + - - -
263U ALA* 4.6 0.2 - - - -
264U SER* 2.8 35.4 + - - +
291V LEU 5.3 0.4 - - - +
292V MET* 4.2 27.6 - - + +
295V ASN* 4.4 17.3 - - + +
296V ILE* 4.6 18.8 - - + -
299V CYS* 5.8 1.8 - - - -
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Residues in contact with TYR 261 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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404Q ILE* 4.7 9.9 - - + -
369R THR* 4.5 19.5 + - - -
370R ILE* 4.6 10.6 + - + +
373R GLY* 3.4 32.2 + - - -
374R ASP* 4.3 4.7 + - - -
377R LEU* 4.8 8.4 - - + +
476S PHE* 2.7 53.8 - + + -
479S ARG* 5.4 9.6 - - + +
480S ILE* 5.6 3.6 - - + -
257U MET 2.6 21.2 + - - +
258U VAL* 3.8 8.1 - - - +
259U VAL 3.4 0.2 - - - -
260U VAL* 1.3 72.8 - - - +
262U LEU* 1.3 58.6 + - + +
264U SER* 4.2 3.6 - - - -
265U LEU* 2.9 42.5 - - + +
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Residues in contact with LEU 262 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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400Q ALA* 3.1 54.7 - - + +
403Q THR* 3.8 17.5 - - + -
404Q ILE* 3.8 16.2 - - + -
258U VAL* 3.1 15.5 - - + +
259U VAL* 3.3 8.3 + - + +
260U VAL 2.9 0.8 - - - -
261U TYR* 1.3 82.3 - - + +
263U ALA* 1.3 56.0 + - - +
265U LEU* 4.4 1.8 - - - -
266U ILE* 2.7 45.3 + - + +
245V VAL* 3.6 30.1 - - + -
248V MET* 6.3 2.0 - - - -
291V LEU* 5.4 4.0 - - + -
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Residues in contact with ALA 263 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259U VAL 3.1 13.7 + - - +
262U LEU* 1.3 81.1 - - - +
264U SER* 1.3 65.9 + - - +
266U ILE* 3.1 0.3 - - - +
267U ARG 2.9 20.4 + - - -
248V MET* 5.8 0.2 - - - -
288V VAL* 2.9 42.6 - - + +
291V LEU* 3.7 17.5 - - + -
292V MET* 3.2 19.7 - - + +
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Residues in contact with SER 264 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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480S ILE* 4.8 19.3 - - - +
346T LEU* 5.0 4.3 - - - -
260U VAL* 2.8 21.7 + - - +
261U TYR* 4.2 4.2 - - - -
263U ALA* 1.3 71.7 - - - +
265U LEU* 1.3 66.1 + - - +
267U ARG* 3.4 12.8 - - - +
268U SER* 2.9 29.2 + - - -
288V VAL* 4.4 0.2 - - - -
292V MET* 2.9 36.3 - - - -
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Residues in contact with LEU 265 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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404Q ILE* 4.0 24.9 - - + -
373R GLY* 5.5 4.0 - - - +
376R LEU* 4.6 21.3 - - + -
377R LEU* 4.5 22.0 - - + -
380R VAL* 6.1 2.0 - - + -
483S CYS* 4.9 5.8 - - - -
261U TYR* 2.9 41.5 - - + +
262U LEU* 3.3 2.6 + - - +
263U ALA 3.1 0.6 - - - -
264U SER* 1.3 78.6 + - - +
266U ILE* 1.3 68.2 + - + +
268U SER* 2.1 36.4 + - - +
269U VAL* 3.0 9.9 + - + +
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Residues in contact with ILE 266 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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403Q THR* 5.1 9.4 - - + -
407Q MET* 3.7 36.8 - - + -
262U LEU* 2.7 33.2 + - + +
263U ALA* 3.1 6.3 - - - +
265U LEU* 1.3 76.5 - - + +
267U ARG* 1.3 65.4 + - - +
269U VAL* 2.9 23.5 + - - +
270U VAL* 3.0 12.6 + - + +
248V MET* 3.5 6.7 - - + -
284V LEU* 2.9 47.3 - - + -
288V VAL* 3.1 16.6 - - + -
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Residues in contact with ARG 267 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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484S LEU* 5.6 3.8 - - - +
487S HIS* 4.4 20.8 + - - -
349T ILE* 3.8 30.4 + - - +
263U ALA 2.9 19.6 + - - +
264U SER* 3.4 10.3 - - - +
266U ILE* 1.3 79.3 - - - +
268U SER* 1.3 64.4 + - - +
270U VAL* 2.8 27.4 + - - +
271U ALA* 3.0 19.7 + - - +
285V GLU* 4.6 23.1 + - + +
288V VAL* 3.4 21.1 - - + -
289V ASP* 5.4 3.1 - - - +
292V MET* 6.3 0.9 - - - -
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Residues in contact with SER 268 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
483S CYS* 4.6 22.3 - - - +
487S HIS* 5.4 3.5 - - - -
264U SER 2.9 11.9 + - - -
265U LEU* 2.1 40.0 + - - +
267U ARG* 1.3 84.2 - - - +
269U VAL* 1.3 63.7 + - - +
271U ALA* 3.1 9.6 + - - +
272U LEU* 2.9 23.0 + - - +
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Residues in contact with VAL 269 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
407Q MET* 3.7 30.5 - - + -
410Q VAL* 5.0 2.0 - - + -
411Q VAL* 4.4 24.0 - - + -
414Q LEU* 4.4 12.6 - - + -
376R LEU* 5.3 5.4 - - + -
380R VAL* 5.5 6.7 - - + -
265U LEU* 3.0 17.2 + - + +
266U ILE* 2.9 19.8 + - - +
268U SER* 1.3 82.7 + - - +
270U VAL* 1.3 56.7 + - - +
272U LEU* 3.2 12.0 + - + +
273U HIS* 2.9 27.7 + - - +
255V TYR* 4.3 11.7 - - + -
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Residues in contact with VAL 270 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266U ILE* 3.0 15.4 + - + +
267U ARG* 2.8 13.0 + - - +
269U VAL* 1.3 77.6 - - + +
271U ALA* 1.3 61.7 + - - +
273U HIS* 3.4 6.7 + - - +
274U ASN* 3.1 22.4 + - - +
255V TYR* 4.5 16.6 - - + +
281V LYS* 3.5 35.9 - - + +
284V LEU* 4.6 9.9 - - + -
285V GLU* 3.3 44.6 - - + +
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Residues in contact with ALA 271 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
487S HIS* 3.3 39.0 - - + +
267U ARG* 3.0 17.1 + - - +
268U SER* 3.1 8.7 + - - +
270U VAL* 1.3 77.7 - - - +
272U LEU* 1.3 63.5 + - - +
274U ASN* 2.9 12.8 + - - +
275U LEU* 2.8 23.6 + - - +
285V GLU* 4.9 3.3 + - - +
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Residues in contact with LEU 272 (chain U).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
411Q VAL* 5.8 2.5 - - + -
414Q LEU* 4.3 6.7 - - + -
415Q TYR* 3.0 34.8 - - + +
380R VAL* 3.6 23.1 - - + +
384R SER* 5.0 14.6 - - - -
387R ILE* 5.2 2.5 - - + -
486S ILE* 6.2 2.0 - - + -
487S HIS* 5.2 1.0 - - - -
268U SER 2.9 15.8 + - - +
269U VAL* 3.3 15.9 - - + +
271U ALA* 1.3 71.6 - - - +
273U HIS* 1.3 63.9 + - - +
275U LEU* 3.0 18.2 + - + +
276U ILE* 2.9 43.4 + - + +
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Residues in contact with HIS 273 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414Q LEU* 3.3 35.7 - - + +
269U VAL 2.9 10.7 + - - +
270U VAL 3.5 7.6 - - - +
272U LEU* 1.3 73.7 - - - +
274U ASN* 1.3 72.1 + - - +
276U ILE* 3.2 5.2 + - - +
277U ASN* 3.1 49.5 + - - -
255V TYR* 2.6 43.5 - + - +
259V VAL* 5.3 4.0 - - + +
281V LYS* 4.5 10.7 - - + +
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Residues in contact with ASN 274 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
270U VAL* 3.1 19.5 + - - +
271U ALA* 2.9 12.0 + - - +
273U HIS* 1.3 81.5 + - - +
275U LEU* 1.3 66.3 + - - +
277U ASN* 3.1 16.5 + - - +
278U ASN* 3.0 20.5 + - - +
281V LYS* 3.5 34.9 - - - +
285V GLU* 4.3 4.9 + - - -
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Residues in contact with LEU 275 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384R SER 6.0 0.4 - - - +
387R ILE* 4.0 9.2 - - + -
388R ASN* 5.3 0.4 - - + +
490S SER* 3.5 26.7 - - - +
491S VAL* 4.7 7.9 - - + +
494S MET* 3.4 28.0 - - + -
271U ALA 2.8 14.7 + - - +
272U LEU* 3.2 18.8 - - + +
274U ASN* 1.3 71.8 - - - +
276U ILE* 1.3 70.2 + - + +
278U ASN* 3.0 22.6 + - + +
279U LYS* 3.0 42.1 + - + +
----------------------------------------------------------
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Residues in contact with ILE 276 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414Q LEU* 3.2 49.6 - - + +
415Q TYR* 4.5 2.9 - - + -
417Q LYS* 4.8 1.8 - - + -
418Q ALA* 3.3 33.0 - - + +
387R ILE* 3.7 32.3 - - + +
272U LEU* 2.9 27.6 + - + +
273U HIS* 3.2 6.0 + - - +
275U LEU* 1.3 81.4 - - + +
277U ASN* 1.3 65.6 - - - +
279U LYS* 3.3 4.5 + - - +
280U ILE* 3.0 32.8 + - + +
----------------------------------------------------------
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Residues in contact with ASN 277 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
273U HIS* 3.1 42.1 + - - -
274U ASN* 3.1 18.8 + - - +
276U ILE* 1.3 77.8 - - - +
278U ASN* 1.3 62.3 + - - +
280U ILE* 3.0 34.4 + - - +
281U ALA* 3.0 8.7 + - - +
----------------------------------------------------------
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Residues in contact with ASN 278 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48J GLN* 5.5 5.1 + - - -
494S MET* 5.3 13.4 + - + +
495S ARG* 5.6 5.6 - - - +
274U ASN 3.0 10.6 + - - +
275U LEU* 3.0 21.4 + - + +
277U ASN* 1.3 75.2 - - - +
279U LYS* 1.3 63.8 + - - +
281U ALA* 2.8 22.3 + - - +
282U ASN* 2.9 22.5 + - - +
----------------------------------------------------------
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Residues in contact with LYS 279 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
421Q LEU 4.7 2.2 - - - -
422Q THR* 5.5 7.2 - - - -
387R ILE* 3.3 26.2 - - + +
388R ASN* 2.9 44.1 + - - +
389R MET 6.4 0.2 - - - -
490S SER* 3.8 5.7 + - - -
494S MET* 3.0 38.5 - - + +
275U LEU* 3.0 40.0 + - + +
276U ILE 3.6 8.3 - - - +
278U ASN* 1.3 75.3 - - - +
280U ILE* 1.3 56.8 + - + +
282U ASN* 3.9 6.0 - - - +
283U ARG* 3.0 32.6 + - - +
----------------------------------------------------------
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Residues in contact with ILE 280 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
417Q LYS* 3.9 27.6 - - + +
418Q ALA* 5.3 0.2 - - - -
421Q LEU* 2.8 37.5 - - + -
276U ILE* 3.0 32.5 + - + +
277U ASN* 3.0 27.3 + - - +
278U ASN 3.0 0.4 - - - -
279U LYS* 1.3 76.3 - - + +
281U ALA* 1.3 56.4 + - - +
283U ARG* 4.0 0.5 - - - +
284U ASP* 3.1 45.1 + - - +
----------------------------------------------------------
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Residues in contact with ALA 281 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
277U ASN 3.0 10.0 + - - +
278U ASN* 2.8 16.9 + - - +
280U ILE* 1.3 74.6 - - - +
282U ASN* 1.3 66.9 + - - +
284U ASP* 3.7 4.7 + - - +
285U ALA* 2.9 29.3 + - - +
----------------------------------------------------------
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Residues in contact with ASN 282 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
494S MET 4.8 9.0 - - - +
495S ARG 5.0 2.5 + - - +
496S PHE 2.6 28.0 - - - +
278U ASN* 2.9 22.7 + - - +
279U LYS* 4.1 5.6 - - - +
281U ALA* 1.3 79.5 + - - +
283U ARG* 1.3 58.0 + - - +
285U ALA* 2.7 27.1 + - - +
286U GLU* 2.9 29.9 + - - +
----------------------------------------------------------
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Residues in contact with ARG 283 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
421Q LEU 3.3 19.5 - - - +
422Q THR* 3.1 37.2 + - - +
389R MET 5.2 7.5 + - - -
279U LYS 3.0 19.4 + - - +
280U ILE 4.0 1.1 - - - +
282U ASN* 1.3 74.7 - - - +
284U ASP* 1.3 70.7 + - - +
286U GLU* 3.5 7.6 + - - +
287U LYS* 3.1 24.5 + - - +
----------------------------------------------------------
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Residues in contact with ASP 284 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
421Q LEU* 5.1 4.2 - - - +
280U ILE* 3.1 37.1 + - - +
281U ALA* 4.0 4.4 - - - +
283U ARG* 1.3 83.6 - - - +
285U ALA* 1.3 63.9 + - - +
287U LYS* 3.3 9.0 + - - +
288U LYS* 3.1 38.8 + - - +
----------------------------------------------------------
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Residues in contact with ALA 285 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
281U ALA 2.9 19.6 + - - +
282U ASN* 2.7 20.3 + - - +
284U ASP* 1.3 70.9 - - - +
286U GLU* 1.3 59.9 + - + +
288U LYS* 3.1 8.9 + - - +
289U GLU* 2.8 28.3 + - - +
----------------------------------------------------------
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Residues in contact with GLU 286 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
496S PHE 4.3 8.8 - - - +
282U ASN* 2.9 34.8 + - - +
283U ARG* 4.2 7.3 + - - +
285U ALA* 1.3 71.0 - - + +
287U LYS* 1.3 61.2 + - - +
289U GLU* 4.2 7.6 - - + -
290U GLY* 2.8 28.1 + - - -
----------------------------------------------------------
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Residues in contact with LYS 287 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
283U ARG* 3.1 19.1 + - - +
284U ASP* 3.4 13.0 - - - +
286U GLU* 1.3 77.3 - - - +
288U LYS* 1.3 58.6 + - + +
290U GLY* 4.2 0.2 - - - -
291U GLN* 2.9 29.9 + - - +
----------------------------------------------------------
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Residues in contact with LYS 288 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
284U ASP* 3.1 23.7 + - - +
285U ALA* 3.1 9.4 + - - +
287U LYS* 1.3 75.2 - - + +
289U GLU* 1.3 59.9 + - - +
291U GLN* 3.2 8.6 - - - +
292U GLU* 2.9 27.2 + - - +
----------------------------------------------------------
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Residues in contact with GLU 289 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
285U ALA 2.8 16.5 + - - +
286U GLU* 3.9 8.5 - - + +
287U LYS 3.4 0.2 - - - -
288U LYS* 1.3 75.4 - - - +
290U GLY* 1.3 55.4 + - - +
292U GLU* 2.7 29.4 + - - +
293U LYS* 2.9 12.2 + - - +
----------------------------------------------------------
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Residues in contact with GLY 290 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
286U GLU 2.8 18.7 + - - -
287U LYS 4.2 0.2 - - - -
289U GLU* 1.3 72.2 - - - +
291U GLN* 1.3 62.5 + - - +
293U LYS* 3.4 21.2 + - - +
294U GLU* 3.7 4.0 + - - +
----------------------------------------------------------
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Residues in contact with GLN 291 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287U LYS 2.9 22.0 + - - +
288U LYS* 3.2 10.8 - - - +
290U GLY* 1.3 75.7 - - - +
292U GLU* 1.3 62.5 + - - +
294U GLU* 3.1 24.9 + - - +
295U GLU 4.2 1.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 292 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288U LYS 2.9 13.0 + - - +
289U GLU* 2.7 17.7 + - - +
291U GLN* 1.3 72.1 - - - +
293U LYS* 1.3 61.5 + - - +
295U GLU* 2.9 29.9 + - - +
----------------------------------------------------------
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Residues in contact with LYS 293 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
289U GLU 2.9 10.0 + - - +
290U GLY* 3.6 16.6 - - - +
291U GLN 3.2 0.6 - - - -
292U GLU* 1.3 75.2 - - - +
294U GLU* 1.3 64.2 + - - +
295U GLU* 4.5 0.2 - - - -
----------------------------------------------------------
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Residues in contact with GLU 294 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290U GLY 3.7 4.1 + - - +
291U GLN* 3.1 16.6 + - - +
292U GLU 3.0 0.4 - - - -
293U LYS* 1.3 80.7 - - - +
295U GLU* 1.3 67.3 + - + +
----------------------------------------------------------
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Residues in contact with GLU 295 (chain U).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
291U GLN 4.8 0.9 - - - +
292U GLU* 2.9 24.4 + - - +
293U LYS 4.5 0.2 - - - -
294U GLU* 1.3 82.9 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il