Contacts of the helix formed by residues 414 - 466 (chain B) in PDB entry 5GNA
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 414 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
412B ASN 5.5 1.1 - - - +
413B ALA* 1.3 77.4 - - - +
415B LEU* 1.3 64.2 + - - +
416B LYS* 3.9 8.0 + - - +
417B SER* 3.1 27.7 + - - -
418B LEU* 3.0 22.4 + - - +
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Residues in contact with LEU 415 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
413B ALA 3.7 1.0 + - - -
414B THR* 1.3 73.4 - - - +
416B LYS* 1.3 51.3 + - - +
418B LEU* 3.2 16.2 + - + +
419B THR* 2.8 50.0 + - - +
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Residues in contact with LYS 416 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
414B THR* 3.2 7.6 - - - +
415B LEU* 1.3 78.4 - - - +
417B SER* 1.3 56.3 + - - +
419B THR* 3.3 7.4 + - - -
420B LYS* 2.9 53.0 + - + +
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Residues in contact with SER 417 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
413B ALA* 4.7 6.2 - - - +
414B THR* 3.1 28.5 + - - -
416B LYS* 1.3 77.6 - - - +
418B LEU* 1.3 60.3 + - - +
420B LYS* 3.4 11.6 + - - +
421B GLN* 3.2 37.8 + - - +
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Residues in contact with LEU 418 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
413B ALA* 4.2 26.5 - - + +
414B THR 3.0 19.2 + - - +
415B LEU* 3.6 17.5 - - + +
417B SER* 1.3 76.0 - - - +
419B THR* 1.3 58.6 + - - +
421B GLN* 3.3 22.1 + - - +
422B TYR* 2.9 29.3 + - - +
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Residues in contact with THR 419 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
415B LEU* 2.8 35.9 + - - +
416B LYS* 3.6 7.8 - - - -
418B LEU* 1.3 75.3 - - - +
420B LYS* 1.3 64.6 + - - +
422B TYR* 3.4 10.9 + - + +
423B LEU* 3.0 41.2 + - + +
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Residues in contact with LYS 420 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
416B LYS* 2.9 46.9 + - + +
417B SER* 3.6 9.2 - - - +
419B THR* 1.3 76.1 - - - +
421B GLN* 1.3 55.8 + - + +
423B LEU* 3.3 7.8 + - - +
424B SER* 2.9 31.0 + - - -
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Residues in contact with GLN 421 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
417B SER* 3.2 31.9 + - - +
418B LEU* 3.6 23.6 - - - +
420B LYS* 1.3 75.3 - - + +
422B TYR* 1.3 63.6 + - - +
424B SER* 3.2 6.3 + - - -
425B VAL* 2.9 34.7 + - + +
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Residues in contact with TYR 422 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
418B LEU 2.9 19.0 + - - +
419B THR* 3.4 13.2 - - + +
421B GLN* 1.3 76.2 - - - +
423B LEU* 1.3 76.6 + - + +
425B VAL* 3.5 5.1 + - - +
426B SER* 2.9 35.5 + - - -
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Residues in contact with LEU 423 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
419B THR* 3.0 35.2 + - + +
420B LYS* 3.8 6.1 - - + +
422B TYR* 1.3 90.8 - - + +
424B SER* 1.3 61.1 + - - +
426B SER* 3.3 8.3 + - - +
427B ASN* 2.8 43.5 + - - +
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Residues in contact with SER 424 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
420B LYS 2.9 17.7 + - - -
421B GLN* 3.5 7.6 - - - -
423B LEU* 1.3 76.5 - - - +
425B VAL* 1.3 64.0 + - - +
427B ASN* 3.2 11.1 + - - +
428B SER* 3.1 25.5 + - - -
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Residues in contact with VAL 425 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
421B GLN* 2.9 29.2 + - + +
422B TYR* 4.0 5.2 - - - +
424B SER* 1.3 73.4 - - - +
426B SER* 1.3 63.1 + - - +
428B SER* 3.2 9.4 + - - -
429B ILE* 3.0 37.4 + - + +
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Residues in contact with SER 426 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
422B TYR* 2.9 28.1 + - - -
423B LEU* 3.5 14.4 - - - +
425B VAL* 1.3 77.8 - - - +
427B ASN* 1.3 59.9 + - - +
429B ILE* 3.3 12.1 + - - +
430B ASP* 3.0 38.0 + - - +
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Residues in contact with ASN 427 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
423B LEU* 2.8 32.2 + - - +
424B SER* 3.2 8.7 + - - +
426B SER* 1.3 76.4 + - - +
428B SER* 1.3 59.5 + - - +
430B ASP* 3.3 13.3 + - - +
431B GLU* 2.9 44.8 + - - +
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Residues in contact with SER 428 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
424B SER* 3.1 15.4 + - - -
425B VAL* 3.2 13.0 + - - -
427B ASN* 1.3 72.5 - - - +
429B ILE* 1.3 58.7 + - - +
431B GLU* 3.8 13.3 + - - +
432B THR* 2.7 39.7 + - - -
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Residues in contact with ILE 429 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
425B VAL* 3.0 34.8 + - + +
426B SER* 3.6 10.8 - - - +
427B ASN 3.3 0.2 - - - -
428B SER* 1.3 75.0 - - - +
430B ASP* 1.3 63.4 + - - +
432B THR* 3.0 8.4 + - - -
433B VAL* 2.8 41.3 + - + +
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Residues in contact with ASP 430 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
426B SER* 3.0 23.1 + - - +
427B ASN* 3.3 16.9 + - - +
429B ILE* 1.3 81.8 - - - +
431B GLU* 1.3 57.7 + - + +
433B VAL* 3.4 5.4 + - - +
434B ALA* 2.9 30.7 + - - +
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Residues in contact with GLU 431 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427B ASN* 2.9 30.7 + - + +
428B SER* 3.8 11.8 + - - +
430B ASP* 1.3 77.4 - - + +
432B THR* 1.3 63.2 + - - +
434B ALA* 3.6 7.5 - - - +
435B ARG* 3.1 35.2 + - - +
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Residues in contact with THR 432 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
428B SER* 2.7 24.2 + - - -
429B ILE* 3.4 6.9 - - - -
431B GLU* 1.3 76.8 - - - +
433B VAL* 1.3 63.7 + - + +
435B ARG* 3.2 32.2 + - - +
436B TYR* 3.1 52.6 + - + +
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Residues in contact with VAL 433 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92A LEU 5.1 7.6 - - - +
93A ILE* 4.4 21.5 - - + +
429B ILE* 2.8 35.1 + - + +
430B ASP* 3.9 5.4 - - - +
432B THR* 1.3 70.3 - - + +
434B ALA* 1.3 66.5 + - - +
436B TYR* 3.2 12.5 + - + +
437B LYS* 3.0 47.5 + - + +
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Residues in contact with ALA 434 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
430B ASP 2.9 18.6 + - - +
431B GLU* 3.6 8.7 - - - +
433B VAL* 1.3 76.8 - - - +
435B ARG* 1.3 62.8 + - - +
437B LYS* 3.4 10.8 + - - +
438B ALA* 3.1 23.4 + - - +
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Residues in contact with ARG 435 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
428B SER 5.3 0.2 + - - -
431B GLU* 3.1 29.0 + - - +
432B THR* 3.3 42.8 + - - +
433B VAL 3.2 0.2 - - - -
434B ALA* 1.3 76.3 - - - +
436B TYR* 1.3 67.4 + - + +
438B ALA* 3.3 7.2 + - + +
439B GLN* 2.9 31.4 + - - +
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Residues in contact with TYR 436 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85A ARG* 5.1 7.2 - - - -
89A LEU* 3.9 23.0 - - + +
92A LEU* 3.9 46.0 - - + +
93A ILE* 3.8 16.8 - - + +
432B THR* 3.1 40.8 + - + +
433B VAL* 3.6 11.9 - - + +
435B ARG* 1.3 91.1 + - + +
437B LYS* 1.3 57.7 + - - +
439B GLN* 3.3 8.1 + - - +
440B PHE* 2.8 30.7 + - - +
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Residues in contact with LYS 437 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93A ILE* 3.7 39.7 - - + -
433B VAL* 3.0 33.2 + - + +
434B ALA* 3.7 8.7 - - - +
435B ARG 3.3 0.2 - - - -
436B TYR* 1.3 76.1 - - - +
438B ALA* 1.3 58.3 + - - +
440B PHE* 3.3 3.9 + - - +
441B THR* 2.9 34.4 + - - +
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Residues in contact with ALA 438 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
434B ALA 3.1 17.2 + - - +
435B ARG* 3.3 7.6 + - - +
437B LYS* 1.3 75.6 - - - +
439B GLN* 1.3 62.1 + - - +
441B THR* 3.3 6.6 + - - -
442B GLN* 3.1 43.7 + - - +
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Residues in contact with GLN 439 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30A TRP* 3.5 19.9 - - + +
31A ASP* 3.5 24.8 + - - +
34A LEU* 4.2 13.5 - - + -
85A ARG* 2.8 41.1 + - - +
89A LEU* 3.7 7.4 - - + +
435B ARG* 2.9 17.9 + - - +
436B TYR* 3.7 9.9 - - - +
438B ALA* 1.3 74.1 - - - +
440B PHE* 1.3 65.7 + - - +
442B GLN* 3.3 5.8 + - - +
443B LEU* 2.9 41.6 + - + +
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Residues in contact with PHE 440 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86A LEU* 3.4 55.8 - - + +
89A LEU* 3.7 18.1 - - + +
90A SER* 3.5 18.2 - - - -
93A ILE* 4.1 13.5 - - + -
436B TYR 2.8 22.2 + - - +
437B LYS* 3.6 4.9 - - - +
438B ALA 3.3 0.2 - - - -
439B GLN* 1.3 73.2 - - - +
441B THR* 1.3 65.0 + - - +
444B ASP* 2.9 41.8 + - + +
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Residues in contact with THR 441 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
437B LYS* 2.9 19.6 + - - +
438B ALA* 3.6 7.4 - - - -
439B GLN 3.3 0.2 - - - -
440B PHE* 1.3 83.3 - - - +
442B GLN* 1.3 61.8 + - + +
444B ASP* 3.5 4.3 + - - +
445B THR* 2.9 38.2 + - - +
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Residues in contact with GLN 442 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34A LEU* 3.8 37.6 - - + +
438B ALA* 3.1 34.7 + - - +
439B GLN* 3.9 1.1 - - - +
441B THR* 1.3 76.8 - - + +
443B LEU* 1.3 60.6 + - - +
445B THR* 3.5 8.0 + - - -
446B MET* 2.9 27.5 + - - +
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Residues in contact with LEU 443 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30A TRP* 4.1 9.6 - - + +
33A LEU* 3.6 30.7 - - + -
34A LEU* 3.9 20.0 - - + -
82A LEU* 3.7 17.4 - - + +
85A ARG* 3.5 33.4 - - + -
86A LEU* 3.9 13.4 - - + +
89A LEU* 3.9 7.0 - - + -
439B GLN* 2.9 39.6 + - + +
442B GLN* 1.3 76.1 - - - +
444B ASP* 1.3 58.1 + - - +
446B MET* 3.3 5.1 + - - +
447B MET* 2.9 28.2 + - - +
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Residues in contact with ASP 444 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86A LEU* 3.7 25.9 - - + +
440B PHE* 2.9 32.0 + - + +
441B THR* 3.7 5.4 - - - +
443B LEU* 1.3 74.4 - - - +
445B THR* 1.3 67.4 + - - +
447B MET* 3.2 7.6 + - - +
448B SER* 3.0 28.9 + - - -
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Residues in contact with THR 445 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441B THR* 2.9 28.0 + - - +
442B GLN* 3.5 8.7 - - - +
443B LEU 3.4 0.2 - - - -
444B ASP* 1.3 79.6 + - - +
446B MET* 1.3 63.1 + - - +
448B SER* 3.3 8.0 + - - -
449B LYS* 3.0 27.3 + - + +
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Residues in contact with MET 446 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21A LEU* 4.0 8.1 - - + -
33A LEU* 4.0 38.8 - - + -
34A LEU* 4.3 10.3 - - + -
37A GLU* 3.5 48.7 - - + +
78A LEU* 3.8 30.5 - - + -
82A LEU* 3.9 11.9 - - + -
442B GLN 2.9 15.4 + - - +
443B LEU* 3.4 10.1 - - - +
444B ASP 3.2 0.2 - - - -
445B THR* 1.3 76.5 - - - +
447B MET* 1.3 59.3 + - - +
449B LYS* 3.1 6.2 + - - +
450B LEU* 2.9 31.7 + - + +
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Residues in contact with MET 447 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A LYS* 3.5 22.4 - - + +
82A LEU* 3.3 27.1 - - + +
83A GLN* 2.9 59.0 - - + +
86A LEU* 3.4 18.8 - - + -
443B LEU 2.9 12.6 + - - +
444B ASP* 3.2 13.2 + - - +
446B MET* 1.3 76.9 - - - +
448B SER* 1.3 61.7 + - - +
450B LEU* 3.3 13.6 + - - +
451B ASN* 3.5 9.2 + - - +
----------------------------------------------------------
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Residues in contact with SER 448 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
444B ASP* 3.0 20.5 + - - -
445B THR* 3.3 10.0 + - - -
447B MET* 1.3 76.1 - - - +
449B LYS* 1.3 62.7 + - - +
451B ASN* 3.1 24.2 + - - +
452B ASN* 3.6 10.5 + - - -
----------------------------------------------------------
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Residues in contact with LYS 449 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37A GLU* 4.2 3.1 - - - +
41A LEU* 3.6 45.3 - - + +
445B THR* 3.0 19.1 + - + +
446B MET* 3.1 11.9 + - - +
448B SER* 1.3 78.0 - - - +
450B LEU* 1.3 57.7 + - + +
452B ASN* 3.2 23.0 + - + +
453B THR* 3.0 30.2 + - + +
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Residues in contact with LEU 450 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37A GLU* 4.8 11.2 - - - +
40A TYR* 4.3 12.3 - - + -
41A LEU* 6.0 0.4 - - + -
75A GLU* 3.5 29.4 - - + +
78A LEU* 3.7 30.5 - - + -
79A LYS* 3.3 35.0 - - + -
82A LEU* 3.8 19.3 - - + -
446B MET* 2.9 18.9 + - + +
447B MET* 3.6 5.2 - - - +
448B SER 3.2 0.2 - - - -
449B LYS* 1.3 73.8 - - + +
451B ASN* 1.3 59.8 + - - +
453B THR* 3.1 5.4 + - + +
454B SER* 2.9 34.3 + - - -
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Residues in contact with ASN 451 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A LYS* 3.8 14.1 - - - +
447B MET 3.5 6.3 + - - +
448B SER* 3.1 16.1 + - - +
450B LEU* 1.3 78.7 - - - +
452B ASN* 1.3 69.1 + - - +
454B SER* 3.8 2.1 + - - -
455B SER* 3.3 22.1 + - - -
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Residues in contact with ASN 452 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
448B SER* 3.6 12.6 + - - +
449B LYS* 3.2 26.0 + - + +
451B ASN* 1.3 82.3 - - - +
453B THR* 1.3 66.2 + - + +
455B SER* 3.3 7.9 + - - -
456B TYR* 3.1 21.3 + - - +
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Residues in contact with THR 453 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40A TYR* 4.7 4.5 - - + -
41A LEU* 4.2 25.4 - - + -
44A ILE* 4.5 22.4 - - + -
48A MET* 6.4 0.2 - - + -
75A GLU* 2.6 28.2 + - - +
449B LYS* 3.0 16.2 + - + +
450B LEU* 3.1 15.1 + - + +
452B ASN* 1.3 75.5 - - + +
454B SER* 1.3 54.5 + - - +
456B TYR* 3.2 8.4 + - - +
457B LEU* 2.7 41.1 + - - +
----------------------------------------------------------
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Residues in contact with SER 454 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72A LEU* 3.5 17.3 + - - +
75A GLU* 2.5 28.6 + - - +
76A GLN* 5.6 1.0 + - - -
79A LYS* 3.2 19.0 + - - -
450B LEU 2.9 16.5 + - - -
451B ASN* 4.0 3.4 - - - -
453B THR* 1.3 76.6 + - - +
455B SER* 1.3 54.2 + - - +
457B LEU* 4.3 0.2 - - - -
458B THR* 2.7 38.9 + - - -
----------------------------------------------------------
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Residues in contact with SER 455 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
451B ASN* 3.3 11.8 + - - -
452B ASN* 3.3 12.5 + - - -
453B THR 3.2 0.4 - - - -
454B SER* 1.3 78.0 - - - +
456B TYR* 1.3 62.1 + - - +
458B THR* 3.5 6.1 + - - -
459B GLN* 3.3 34.9 + - - +
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Residues in contact with TYR 456 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11A TRP* 4.6 3.1 - + - -
44A ILE* 4.1 12.8 - - + -
47A VAL* 3.4 39.6 + - + +
48A MET* 3.4 47.2 - - + +
452B ASN 3.1 13.1 + - - +
453B THR* 3.5 8.7 - - - +
455B SER* 1.3 75.2 + - - +
457B LEU* 1.3 73.0 + - + +
459B GLN* 3.2 22.1 + - - +
460B GLN* 3.0 58.5 + - + +
----------------------------------------------------------
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Residues in contact with LEU 457 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11A TRP* 3.7 31.2 - - + -
14A ILE* 4.7 0.2 - - + -
40A TYR* 3.8 11.4 - - - +
44A ILE* 3.9 20.4 - - + -
68A ILE* 3.4 14.2 - - + +
71A THR* 3.5 33.4 - - + -
72A LEU* 3.5 22.0 - - + +
75A GLU* 3.9 14.4 - - - +
453B THR 2.7 23.9 + - - +
456B TYR* 1.3 79.4 - - + +
458B THR* 1.3 57.1 + - - +
460B GLN* 3.2 2.3 + - - -
461B PHE* 2.9 26.7 + - - +
----------------------------------------------------------
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Residues in contact with THR 458 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72A LEU* 3.7 19.6 - - + +
454B SER* 2.7 23.2 + - - -
455B SER* 3.7 7.0 - - - -
457B LEU* 1.3 77.5 - - - +
459B GLN* 1.3 63.6 + - + +
461B PHE* 3.4 4.8 + - + +
462B THR* 3.2 31.6 + - + +
----------------------------------------------------------
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Residues in contact with GLN 459 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
455B SER* 3.3 25.0 + - - +
456B TYR* 3.2 23.4 + - - +
458B THR* 1.3 80.4 - - + +
460B GLN* 1.3 62.9 + - - +
462B THR* 3.0 23.2 + - - -
463B ALA* 3.0 16.3 + - - +
----------------------------------------------------------
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Residues in contact with GLN 460 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11A TRP* 3.6 33.8 - - + -
47A VAL 5.0 2.4 - - - +
52A THR* 5.3 2.8 + - - -
68A ILE* 4.0 4.9 - - + -
456B TYR* 3.0 61.0 + - + +
457B LEU 3.2 8.2 + - - +
459B GLN* 1.3 78.8 - - - +
461B PHE* 1.3 55.2 + - - +
463B ALA* 3.2 10.5 + - - +
464B MET* 2.7 43.0 + - - +
----------------------------------------------------------
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Residues in contact with PHE 461 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65A ALA* 3.4 36.3 - - + -
66A GLY* 5.5 0.2 - - - -
68A ILE* 3.7 15.1 - - + +
69A LYS* 3.8 29.4 - - + -
72A LEU* 4.5 8.3 - - + -
457B LEU 2.9 13.4 + - - +
458B THR* 3.5 12.8 - - + +
460B GLN* 1.3 75.2 - - - +
462B THR* 1.3 67.1 + - + +
464B MET* 3.2 3.5 + - - +
465B ASN* 2.9 53.7 + - - -
----------------------------------------------------------
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Residues in contact with THR 462 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458B THR* 3.2 22.5 + - + +
459B GLN* 3.0 18.4 + - - -
461B PHE* 1.3 83.9 - - + +
463B ALA* 1.3 61.8 + - - +
465B ASN* 3.3 7.9 + - - +
466B LYS* 3.1 22.9 + - - +
----------------------------------------------------------
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Residues in contact with ALA 463 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61A GLN* 4.8 1.2 - - - +
459B GLN 3.0 13.9 + - - +
460B GLN* 3.6 13.5 - - - +
462B THR* 1.3 78.7 + - - +
464B MET* 1.3 67.4 + - + +
466B LYS* 3.0 47.2 - - - +
----------------------------------------------------------
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Residues in contact with MET 464 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7A PHE* 3.7 34.8 - - + -
11A TRP* 4.1 10.8 - - + +
52A THR* 3.8 20.0 - - - +
58A ARG* 3.4 7.1 + - - -
61A GLN* 3.1 61.4 - - - +
64A VAL* 3.8 12.8 - - + -
65A ALA* 3.8 16.2 - - + +
68A ILE* 4.0 12.6 - - + -
460B GLN* 2.7 25.5 + - - +
461B PHE 3.2 5.1 + - - +
463B ALA* 1.3 73.0 - - + +
465B ASN* 1.3 60.6 + - - +
----------------------------------------------------------
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Residues in contact with ASN 465 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58A ARG* 3.7 12.2 + - - +
62A ASP* 4.9 6.2 - - - +
65A ALA* 3.3 22.0 - - - +
461B PHE* 2.9 51.8 + - - +
462B THR* 3.7 7.3 - - - +
463B ALA 3.2 0.2 - - - -
464B MET* 1.3 73.6 - - - +
466B LYS* 1.3 68.6 + - - +
467B SER 4.1 3.5 - - - +
----------------------------------------------------------
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Residues in contact with LYS 466 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58A ARG* 2.6 29.3 + - - -
61A GLN* 3.5 5.0 - - - +
462B THR 3.1 11.4 + - - +
463B ALA* 3.0 41.3 + - - +
465B ASN* 1.3 76.7 - - - +
467B SER* 1.3 65.3 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il