Contacts of the helix formed by residues 76 - 125 (chain B) in PDB entry 5HMG
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ARG 76 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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75B GLY* 1.3 71.9 - - - +
77B ILE* 1.3 64.2 + - - +
79B ASP* 3.3 12.8 + - - +
80B LEU* 3.2 20.3 + - - +
104C ASP* 4.7 3.9 + - - +
106C ALA* 3.8 26.9 - - + +
107C SER* 2.8 27.3 + - - +
110C SER* 5.3 0.7 - - - -
70D PHE* 4.2 5.3 - - - -
74D GLU* 2.8 43.4 + - - -
77D ILE* 3.8 26.5 - - + +
78D GLN* 4.3 1.4 - - - +
81D GLU* 2.8 42.7 + - - +
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Residues in contact with ILE 77 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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74B GLU* 4.5 10.8 - - + +
75B GLY 4.8 0.4 - - - +
76B ARG* 1.3 76.9 - - - +
78B GLN* 1.3 66.2 + - + +
80B LEU* 3.0 7.7 + - + +
81B GLU* 3.0 24.2 + - - +
77D ILE* 4.0 14.1 - - + -
76F ARG* 3.6 41.7 - - - +
77F ILE* 3.9 27.8 - - + -
80F LEU* 3.8 28.0 - - + -
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Residues in contact with GLN 78 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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70B PHE* 3.3 37.3 - - + +
72B GLU 2.9 27.6 + - - +
73B VAL* 4.9 2.9 - - - +
74B GLU* 3.1 37.8 + - + +
75B GLY 3.0 9.2 + - - +
77B ILE* 1.3 81.9 - - - +
79B ASP* 1.3 58.4 + - - +
81B GLU* 3.2 11.9 + - - +
82B LYS* 2.9 56.1 + - - +
76F ARG* 4.0 2.5 - - - +
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Residues in contact with ASP 79 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75B GLY* 2.9 19.6 + - - +
76B ARG* 3.3 12.0 - - - +
78B GLN* 1.3 77.5 - - - +
80B LEU* 1.3 56.3 + - - +
82B LYS* 3.5 8.9 + - - +
83B TYR* 3.0 27.5 + - - +
110C SER* 2.7 34.4 + - - -
114C SER* 5.3 0.2 + - - -
64D HIS* 3.4 18.8 + - - -
65D GLN 4.5 11.2 - - - +
66D ILE* 3.7 7.9 - - + +
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Residues in contact with LEU 80 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76B ARG 3.2 7.3 + - - +
77B ILE* 3.0 9.7 + - + +
79B ASP* 1.3 77.3 - - - +
81B GLU* 1.3 64.6 + - - +
83B TYR* 3.1 2.1 + - + +
84B VAL* 2.9 30.4 + - + +
66D ILE* 3.9 25.7 - - + +
77D ILE* 3.8 20.2 - - + -
80D LEU* 3.7 17.5 - - + -
81D GLU* 4.1 26.9 - - + +
84D VAL* 4.2 23.6 - - + -
80F LEU* 3.5 28.5 - - + -
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Residues in contact with GLU 81 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66B ILE* 4.0 17.6 - - + +
67B GLU* 4.7 7.1 + - - +
70B PHE* 3.3 24.2 - - + -
77B ILE* 3.0 13.3 + - - +
78B GLN* 3.2 14.6 + - - +
80B LEU* 1.3 76.6 - - - +
82B LYS* 1.3 61.2 - - - +
84B VAL* 3.4 2.6 + - - +
85B GLU* 3.3 20.4 + - - +
76F ARG* 2.7 56.3 + - - +
80F LEU* 4.1 28.0 - - + +
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Residues in contact with LYS 82 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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68B LYS 6.0 0.2 - - - +
70B PHE* 3.5 27.7 - - + +
78B GLN* 2.9 45.4 + - - +
79B ASP* 3.8 7.8 + - - +
81B GLU* 1.3 75.2 - - - +
83B TYR* 1.3 57.3 + - - +
85B GLU* 3.5 3.6 + - - +
86B ASP* 3.0 30.4 + - - +
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Residues in contact with TYR 83 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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79B ASP 3.0 9.0 + - - +
80B LEU* 3.1 3.8 + - - +
82B LYS* 1.3 73.3 - - - +
84B VAL* 1.3 66.1 + - - +
86B ASP* 4.5 7.4 - - - +
87B THR* 2.9 45.4 + - + +
62D LYS* 6.4 1.3 - - + -
65D GLN* 3.5 39.6 + - + -
66D ILE* 3.5 46.0 - - + -
68D LYS* 3.2 11.3 + - - -
84D VAL* 3.7 18.2 - - + -
85D GLU* 2.7 30.1 + - - -
88D LYS* 2.7 23.7 + - + -
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Residues in contact with VAL 84 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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66B ILE* 4.4 2.5 - - + -
80B LEU* 2.9 19.6 + - + +
81B GLU 3.8 4.3 - - - +
83B TYR* 1.3 74.1 - - - +
85B GLU* 1.3 63.1 + - - +
87B THR* 3.2 7.6 + - - -
88B LYS* 3.0 23.1 + - + +
84D VAL* 3.8 23.3 - - + -
80F LEU* 4.1 10.8 - - + -
83F TYR* 3.5 32.8 - - + -
84F VAL* 3.7 32.5 - - + -
87F THR* 4.8 5.2 - - - +
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Residues in contact with GLU 85 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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299A LYS* 3.9 13.7 - - + +
308A TYR* 5.8 1.2 - - - +
66B ILE* 4.8 3.1 - - + +
68B LYS* 2.7 45.0 + - + +
81B GLU 3.3 13.2 + - - +
82B LYS* 4.0 4.0 - - - +
83B TYR 3.3 0.4 - - - -
84B VAL* 1.3 78.9 - - - +
86B ASP* 1.3 59.1 + - - +
88B LYS* 3.0 15.9 + - - +
89B ILE* 2.9 54.3 + - + +
83F TYR* 2.5 31.5 + - - -
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Residues in contact with ASP 86 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310A LYS* 3.4 16.6 + - - -
82B LYS 3.0 18.4 + - - +
83B TYR* 3.3 8.9 + - + +
85B GLU* 1.3 74.6 - - - +
87B THR* 1.3 69.4 + - + +
89B ILE* 3.3 7.9 + - - +
90B ASP* 3.0 21.5 + - - +
62D LYS* 2.7 41.5 + - - +
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Residues in contact with THR 87 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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83B TYR* 2.9 54.0 + - + +
84B VAL* 3.2 10.6 + - - -
86B ASP* 1.3 83.3 - - - +
88B LYS* 1.3 60.8 + - - +
90B ASP* 3.4 5.6 + - - +
91B LEU* 3.1 32.0 + - - +
84D VAL* 5.0 4.5 - - - +
88D LYS* 3.8 34.1 - - + +
92D TRP* 6.3 0.4 - - - -
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Residues in contact with LYS 88 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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62B LYS* 6.0 3.2 - - - +
65B GLN* 4.5 6.5 + - - -
68B LYS* 4.7 0.8 - - - +
84B VAL 3.0 14.3 + - - +
85B GLU* 3.0 22.5 + - - +
87B THR* 1.3 77.3 + - - +
89B ILE* 1.3 64.9 + - - +
91B LEU* 3.1 9.4 + - - +
92B TRP* 3.0 43.8 + - + +
83F TYR* 2.7 35.6 + - + +
87F THR* 3.7 32.5 - - + +
91F LEU* 5.2 4.9 - - + -
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Residues in contact with ILE 89 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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299A LYS* 4.0 14.8 - - + -
308A TYR* 3.8 41.7 - - + +
309A VAL 4.9 0.2 - - - -
310A LYS* 3.6 38.4 - - + +
85B GLU* 2.9 46.0 + - + +
86B ASP* 3.6 7.2 - - - +
88B LYS* 1.3 78.4 - - + +
90B ASP* 1.3 61.9 + - - +
92B TRP* 3.5 5.3 + - - +
93B SER* 2.9 30.6 + - - +
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Residues in contact with ASP 90 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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310A LYS* 2.7 39.1 + - - +
86B ASP* 3.0 15.7 + - - +
87B THR* 4.0 5.9 - - - +
88B LYS 3.3 0.2 - - - -
89B ILE* 1.3 78.0 - - - +
91B LEU* 1.3 63.5 + - + +
93B SER* 3.3 5.6 + - - -
94B TYR* 3.0 24.1 + - - +
307C LYS* 6.0 0.4 - - - -
60D ASN* 3.5 15.6 + - - +
62D LYS* 2.7 33.5 + - - -
92D TRP* 4.4 12.9 - - + +
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Residues in contact with LEU 91 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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87B THR* 3.1 24.4 + - - +
88B LYS* 3.6 3.8 - - - +
90B ASP* 1.3 76.3 - - - +
92B TRP* 1.3 63.4 + - - +
94B TYR* 3.2 5.6 + - - +
95B ASN* 3.0 29.1 + - - +
88D LYS* 5.2 9.0 - - + +
91D LEU* 3.6 25.4 - - + -
92D TRP* 3.3 41.1 - - + +
95D ASN* 3.9 16.4 - - - +
91F LEU* 3.4 34.1 - - + -
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Residues in contact with TRP 92 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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294A PHE* 4.2 14.6 - + - -
307A LYS* 3.6 47.3 - - + +
308A TYR 4.1 15.5 - - - +
309A VAL* 3.8 8.9 - - + +
88B LYS* 3.0 44.2 + - + +
89B ILE* 4.1 3.8 - - - +
91B LEU* 1.3 76.8 - - - +
93B SER* 1.3 55.9 + - - +
95B ASN* 3.2 23.3 + - + +
96B ALA* 2.9 24.6 + - - +
87F THR* 6.3 0.6 - - - -
90F ASP* 4.4 15.6 - - + +
91F LEU* 3.4 27.8 - - + +
94F TYR* 3.6 43.5 - + + -
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Residues in contact with SER 93 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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309A VAL* 3.6 5.8 - - - -
310A LYS* 2.8 40.6 + - - +
311A GLN* 2.9 37.4 + - - -
89B ILE 2.9 18.9 + - - -
90B ASP* 3.7 7.0 - - - -
91B LEU 3.2 0.2 - - - -
92B TRP* 1.3 75.9 - - - +
94B TYR* 1.3 63.3 + - - +
96B ALA 3.2 1.7 + - - -
97B GLU* 3.0 9.4 + - - +
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Residues in contact with TYR 94 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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90B ASP 3.0 13.1 + - - +
91B LEU 3.5 7.9 - - - +
93B SER* 1.3 75.0 - - - +
95B ASN* 1.3 71.1 + - - +
97B GLU* 3.2 6.3 + - + +
98B LEU* 2.9 55.2 + - + +
294C PHE* 5.9 3.1 - + - -
92D TRP* 3.6 26.7 - + + -
95D ASN* 3.2 44.8 + - + -
99D LEU* 3.9 33.4 - - + +
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Residues in contact with ASN 95 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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294A PHE* 5.7 0.2 - - + -
91B LEU* 3.0 15.2 + - - +
92B TRP* 3.4 26.8 - - + +
94B TYR* 1.3 92.3 - - - +
96B ALA* 1.3 63.2 + - - +
98B LEU* 3.9 4.7 - - - +
99B LEU* 2.9 25.9 + - - +
95D ASN* 4.5 7.1 + - - +
91F LEU* 3.9 16.6 - - - +
94F TYR* 3.1 45.6 + - + -
95F ASN* 4.5 7.0 + - - +
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Residues in contact with ALA 96 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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294A PHE* 3.5 34.7 - - + -
309A VAL* 3.9 10.8 - - + -
314A LEU* 3.5 24.5 - - + -
92B TRP 2.9 15.6 + - - +
93B SER 3.2 6.3 + - - +
95B ASN* 1.3 71.3 - - - +
97B GLU* 1.3 62.7 + - - +
99B LEU* 3.6 2.2 - - - +
100B VAL* 3.1 29.3 + - - +
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Residues in contact with GLU 97 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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27A LYS* 2.9 30.6 + - - +
311A GLN* 3.2 28.2 + - - +
314A LEU* 4.1 9.2 - - - +
93B SER 3.0 9.9 + - - +
94B TYR* 3.7 7.0 - - + +
96B ALA* 1.3 74.6 - - - +
98B LEU* 1.3 65.4 + - - +
100B VAL* 3.6 4.0 + - - +
101B ALA* 3.1 24.1 + - - +
54D ARG* 2.8 34.6 + - - +
58D LYS* 3.5 22.2 + - - +
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Residues in contact with LEU 98 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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29A ILE* 5.9 1.8 - - + -
94B TYR* 2.9 50.6 + - + +
95B ASN* 4.1 3.6 - - - +
97B GLU* 1.3 76.7 - - - +
99B LEU* 1.3 63.7 + - - +
101B ALA* 3.3 6.0 + - + -
102B LEU* 2.9 59.1 + - + +
98D LEU* 5.8 7.6 - - + -
99D LEU* 4.4 22.7 - - + -
102D LEU* 5.0 8.5 - - + -
98F LEU* 5.6 8.7 - - + -
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Residues in contact with LEU 99 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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42A LEU* 5.2 0.7 - - + -
294A PHE* 4.2 25.1 - - + -
55B VAL* 3.7 29.2 - - + -
95B ASN 2.9 17.7 + - - +
96B ALA 3.6 2.9 - - - +
97B GLU 3.2 0.2 - - - -
98B LEU* 1.3 77.7 - - - +
100B VAL* 1.3 69.6 + - + +
102B LEU* 3.6 7.1 - - + +
103B GLU* 2.9 47.6 + - + +
94F TYR* 3.9 23.1 - - + +
98F LEU* 4.4 19.7 - - + -
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Residues in contact with VAL 100 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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27A LYS* 5.0 12.6 - - + -
42A LEU* 3.7 28.9 - - + -
294A PHE* 5.6 0.2 - - + -
314A LEU* 4.0 30.1 - - + -
315A LYS 4.1 20.2 - - - +
316A LEU* 4.4 6.3 - - + -
96B ALA* 3.1 16.5 + - + +
97B GLU* 3.9 7.6 - - - +
99B LEU* 1.3 79.0 - - + +
101B ALA* 1.3 63.0 + - + +
103B GLU* 4.1 5.8 - - - -
104B ASN* 2.8 39.0 + - - +
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Residues in contact with ALA 101 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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27A LYS 4.1 10.1 - - - -
28A THR 3.7 11.7 - - - +
29A ILE* 3.9 12.6 + - + +
97B GLU 3.1 19.4 + - - +
98B LEU* 3.6 8.3 - - + +
100B VAL* 1.3 80.2 - - - +
102B LEU* 1.3 62.9 + - - +
104B ASN* 3.8 1.4 - - - +
105B GLN* 3.0 25.3 + - - +
54D ARG* 3.6 22.2 - - - +
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Residues in contact with LEU 102 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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29A ILE* 3.7 26.8 - - + +
98B LEU* 2.9 44.9 + - + +
99B LEU* 3.6 5.6 - - + +
101B ALA* 1.3 75.7 - - - +
103B GLU* 1.3 64.0 + - + +
105B GLN* 3.3 3.6 - - - +
106B HIS* 3.1 21.6 + - - +
102D LEU* 4.0 22.9 - - + -
29E ILE* 6.3 1.6 - - + -
98F LEU* 4.9 10.1 - - + -
102F LEU* 3.9 38.8 - - + -
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Residues in contact with GLU 103 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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316A LEU* 3.8 23.8 - - + -
51B LYS* 2.8 48.4 + - + +
55B VAL* 5.0 7.5 - - + +
99B LEU* 2.9 40.8 + - + +
100B VAL 3.7 3.4 - - - +
102B LEU* 1.3 76.9 - - + +
104B ASN* 1.3 50.5 + - - +
106B HIS* 2.8 9.5 + - - +
107B THR* 2.8 36.6 + - - -
29E ILE* 3.5 24.5 - - - +
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Residues in contact with ASN 104 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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26A VAL* 3.4 22.3 - - + +
27A LYS 2.9 31.1 + - - +
28A THR* 3.8 6.3 - - - +
315A LYS 3.1 21.8 + - - -
316A LEU* 3.6 8.3 - - - +
317A ALA* 2.7 27.7 + - + +
100B VAL* 2.8 25.9 + - - +
101B ALA 3.8 0.4 - - - +
103B GLU* 1.3 70.0 - - - +
105B GLN* 1.3 63.3 + - - +
107B THR* 3.2 6.6 + - - -
108B ILE* 3.0 28.9 + - - +
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Residues in contact with GLN 105 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28A THR* 3.1 31.9 + - - +
29A ILE* 3.2 35.0 - - + +
30A THR* 3.2 14.9 + - - -
101B ALA 3.0 16.8 + - - +
102B LEU 3.3 5.8 - - - +
104B ASN* 1.3 79.2 - - - +
106B HIS* 1.3 62.0 + - - +
108B ILE* 3.3 10.1 + - - +
109B ASP* 3.2 33.9 + - - +
106D HIS* 4.2 18.0 + - + +
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Residues in contact with HIS 106 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51B LYS* 2.7 23.0 + - - +
102B LEU 3.1 9.3 + - - +
103B GLU* 2.8 10.3 + - - +
105B GLN* 1.3 79.6 - - - +
107B THR* 1.3 57.9 + - - +
109B ASP* 3.3 7.2 + - + +
110B LEU* 2.9 52.1 + - + +
29E ILE* 3.9 16.5 - - + +
30E THR* 3.9 14.6 - - + -
2F LEU* 5.0 15.2 - - + +
105F GLN* 4.1 27.4 + - + +
109F ASP* 5.1 3.6 + - - -
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Residues in contact with THR 107 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316A LEU* 6.1 0.3 - - - +
317A ALA* 3.8 24.4 + - + +
319A GLY 3.8 22.0 - - - +
48B ILE* 4.0 26.2 - - + -
51B LYS* 2.9 28.9 + - - +
103B GLU* 2.8 13.2 + - - +
104B ASN* 3.2 9.2 + - - -
106B HIS* 1.3 69.3 - - - +
108B ILE* 1.3 59.3 + - - +
110B LEU* 3.3 5.7 + - - +
111B THR* 2.9 32.4 + - - +
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Residues in contact with ILE 108 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26A VAL* 5.0 1.3 - - + -
28A THR* 3.9 11.2 - - + +
34A ILE* 3.8 40.4 - - + -
36A VAL* 4.3 19.7 - - + -
317A ALA* 5.6 0.7 - - + -
319A GLY 5.1 2.5 - - - +
320A MET* 5.4 0.4 - - - +
321A ARG* 4.0 28.0 - - + +
1B GLY* 5.0 13.1 - - - +
6B ILE* 5.5 0.5 - - - +
104B ASN 3.0 15.8 + - - +
105B GLN* 3.6 13.5 - - - +
107B THR* 1.3 77.3 - - - +
109B ASP* 1.3 67.3 + - - +
111B THR* 3.2 6.9 + - - -
112B GLY* 3.1 19.2 + - - -
----------------------------------------------------------
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Residues in contact with ASP 109 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1B GLY* 3.6 8.5 - - - -
2B LEU* 3.1 54.5 + - + +
3B PHE* 4.1 6.1 - - + -
105B GLN* 3.2 31.5 + - - +
106B HIS* 3.8 10.2 - - + +
107B THR 3.2 0.2 - - - -
108B ILE* 1.3 76.4 - - - +
110B LEU* 1.3 55.0 + - - +
112B GLY* 3.3 1.9 + - - -
113B SER* 2.7 36.2 + - - -
106D HIS* 5.1 4.0 + - - -
2F LEU* 4.6 10.3 - - + -
----------------------------------------------------------
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Residues in contact with LEU 110 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44B ALA* 4.0 11.9 - - - +
47B GLN* 3.7 52.3 - - + +
48B ILE* 4.3 5.8 - - + -
51B LYS* 4.1 9.4 - - - +
106B HIS* 2.9 47.3 + - + +
107B THR* 3.6 4.9 - - - +
109B ASP* 1.3 75.6 - - - +
111B THR* 1.3 76.2 + - + +
113B SER* 3.1 17.2 + - - -
114B GLU* 3.1 17.2 + - - +
30E THR* 4.0 6.5 - - + -
2F LEU* 4.5 7.7 - - + +
----------------------------------------------------------
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Residues in contact with THR 111 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319A GLY 4.4 0.7 - - - -
320A MET* 3.4 38.2 - - + +
321A ARG 4.5 0.3 + - - -
6B ILE* 3.8 4.1 - - - +
21B TRP* 4.2 6.5 - - + -
22B TYR* 2.8 32.0 + - - +
44B ALA* 4.6 0.9 - - + -
48B ILE* 3.9 27.6 - - + -
107B THR 2.9 20.5 + - - +
108B ILE* 3.2 7.1 + - - -
110B LEU* 1.3 79.1 - - + +
112B GLY* 1.3 63.1 + - - +
114B GLU* 3.3 1.9 + - - -
115B MET 3.1 13.0 + - - -
----------------------------------------------------------
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Residues in contact with GLY 112 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1B GLY* 6.4 1.6 - - - -
3B PHE* 4.4 9.7 - - - +
5B ALA* 4.4 3.0 - - - +
6B ILE* 3.6 21.9 - - - +
108B ILE 3.1 11.6 + - - -
109B ASP* 3.5 4.0 - - - -
110B LEU 3.2 0.2 - - - -
111B THR* 1.3 83.4 + - - +
113B SER* 1.3 60.1 + - - +
115B MET* 3.3 4.3 + - - +
116B ASN* 3.2 22.2 + - - +
----------------------------------------------------------
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Residues in contact with SER 113 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3B PHE* 3.8 20.6 - - - -
109B ASP 2.7 16.6 + - - -
110B LEU* 3.1 13.9 + - - -
112B GLY* 1.3 70.9 - - - +
114B GLU* 1.3 54.8 + - - +
116B ASN* 3.0 5.6 + - - +
117B LYS* 2.8 48.2 + - - +
2F LEU* 2.7 39.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 114 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22B TYR* 3.5 29.8 - - + +
40B SER* 4.6 12.1 - - - +
43B ALA* 3.6 22.0 - - + +
44B ALA* 4.2 14.4 - - - +
47B GLN* 3.3 24.5 + - - +
110B LEU 3.1 11.8 + - - +
111B THR 3.3 0.4 + - - +
113B SER* 1.3 75.0 + - - +
115B MET* 1.3 65.1 + - - +
117B LYS* 2.7 38.1 + - - +
118B LEU* 3.0 22.9 + - - +
----------------------------------------------------------
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Residues in contact with MET 115 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15A LEU* 3.8 25.8 - - + -
16A GLY 3.6 30.1 - - - +
17A HIS* 4.0 7.6 - - - -
5B ALA* 3.7 11.7 - - + -
6B ILE* 4.0 19.3 - - + -
9B PHE* 5.7 0.2 - - + -
10B ILE* 3.7 33.7 - - + -
22B TYR* 3.8 16.7 - - + -
111B THR 3.1 10.2 + - - +
112B GLY 3.4 9.4 - - - +
113B SER 3.2 0.2 - - - -
114B GLU* 1.3 78.5 - - - +
116B ASN* 1.3 64.0 + - - +
118B LEU* 3.0 17.7 + - + +
119B PHE* 3.1 11.0 + - + +
----------------------------------------------------------
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Residues in contact with ASN 116 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3B PHE* 4.2 31.9 - - + +
5B ALA* 4.1 11.4 - - + -
9B PHE* 4.0 20.7 - - - -
112B GLY 3.2 8.7 + - - +
113B SER* 3.0 8.3 + - - +
115B MET* 1.3 78.9 - - - +
117B LYS* 1.3 67.4 + - - +
119B PHE* 3.2 8.3 + - - +
120B GLU* 2.9 37.8 + - - +
124D ARG* 5.4 2.4 + - - -
2F LEU 5.9 0.4 + - - -
----------------------------------------------------------
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Residues in contact with LYS 117 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113B SER* 2.8 39.5 + - - +
114B GLU* 2.7 38.5 + - - +
116B ASN* 1.3 78.1 - - - +
118B LEU* 1.3 61.8 + - - +
120B GLU* 3.3 5.9 + - - +
121B LYS* 2.9 25.4 + - - +
1F GLY 3.1 26.4 + - - +
2F LEU 3.6 10.1 - - - +
3F PHE 4.5 4.3 - - - +
4F GLY* 3.8 22.0 - - - -
----------------------------------------------------------
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Residues in contact with LEU 118 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15A LEU* 3.7 16.8 - - + -
22B TYR* 3.8 17.7 - - + -
23B GLY 4.2 7.2 - - - +
24B PHE* 3.6 28.0 - - + -
37B ASP* 3.7 26.9 - - + +
40B SER* 3.8 21.3 - - - +
114B GLU 3.0 13.6 + - - +
115B MET* 3.4 12.6 - - + +
117B LYS* 1.3 73.7 - - - +
119B PHE* 1.3 63.9 + - - +
121B LYS* 3.3 14.1 + - + +
122B THR* 2.9 30.5 + - - +
----------------------------------------------------------
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Residues in contact with PHE 119 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15A LEU* 3.8 25.0 - - + +
9B PHE* 3.7 23.6 - + + -
10B ILE* 5.0 0.4 - - + -
115B MET* 3.1 14.5 + - + +
116B ASN* 3.2 13.4 + - - +
118B LEU* 1.3 75.0 - - - +
120B GLU* 1.3 71.2 + - + +
122B THR* 3.0 5.5 + - - -
123B ARG* 2.8 31.1 + - + -
132B GLU* 3.4 41.7 - - + -
136B GLY* 3.6 32.1 - - - -
138B PHE* 3.4 30.5 - + - -
124D ARG* 4.1 8.5 - - - -
----------------------------------------------------------
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Residues in contact with GLU 120 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116B ASN* 2.9 33.9 + - - +
117B LYS* 3.7 6.5 - - - +
119B PHE* 1.3 82.0 - - + +
121B LYS* 1.3 58.1 + - - +
123B ARG* 2.6 55.1 + - - +
124B ARG* 2.9 50.1 + - - +
123D ARG* 5.8 1.2 + - - -
124D ARG* 5.2 5.0 + - - -
----------------------------------------------------------
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Residues in contact with LYS 121 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39B LYS* 4.9 21.4 - - - +
117B LYS 2.9 18.2 + - - +
118B LEU* 3.5 14.6 - - + +
119B PHE 3.1 0.2 - - - -
120B GLU* 1.3 74.7 - - - +
122B THR* 1.3 65.7 + - - +
124B ARG* 3.2 11.6 + - - +
125B GLN* 3.2 32.4 + - - +
155B GLY* 5.6 8.3 - - - -
----------------------------------------------------------
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Residues in contact with THR 122 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13A LEU* 4.0 22.0 - - + -
15A LEU* 4.0 8.7 - - + +
24B PHE* 3.7 20.1 - - + -
118B LEU* 2.9 18.8 + - - +
119B PHE 3.5 6.5 - - - -
121B LYS* 1.3 75.4 - - - +
123B ARG* 1.3 64.0 + - - +
125B GLN* 3.2 13.8 + - - +
126B LEU* 3.2 24.0 + - + +
138B PHE* 3.6 25.1 - - + -
152B ILE* 4.3 10.8 + - + +
----------------------------------------------------------
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Residues in contact with ARG 123 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119B PHE* 2.8 18.0 + - + +
120B GLU* 2.6 68.2 + - - +
121B LYS 3.2 0.2 - - - -
122B THR* 1.3 74.5 - - - +
124B ARG* 1.3 83.2 + - - +
126B LEU* 3.1 15.3 + - - +
127B ARG* 3.6 8.7 + - - +
132B GLU* 5.4 4.5 - - + -
138B PHE* 3.5 27.7 - - + -
123D ARG* 5.5 6.7 - - - +
120F GLU* 5.8 1.0 + - - -
123F ARG* 5.4 8.3 - - - +
132F GLU* 3.0 27.3 + - - +
----------------------------------------------------------
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Residues in contact with ARG 124 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120B GLU* 2.9 43.3 + - - +
121B LYS* 3.2 8.7 + - - +
123B ARG* 1.3 96.0 - - - +
125B GLN* 1.3 61.7 + - - +
127B ARG* 3.3 22.6 + - - +
9F PHE* 3.7 37.0 - - - +
116F ASN* 5.4 2.0 + - - -
119F PHE* 4.1 13.3 - - - -
120F GLU* 5.1 4.9 + - - -
132F GLU* 2.7 50.4 + - + +
133F MET 5.5 1.2 - - - -
134F GLY* 4.0 22.2 + - - +
----------------------------------------------------------
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Residues in contact with GLN 125 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121B LYS* 3.2 18.1 + - + +
122B THR* 3.4 16.3 + - - +
124B ARG* 1.3 79.6 - - - +
126B LEU* 1.3 58.0 + - - +
127B ARG* 3.1 6.4 + - - +
152B ILE* 2.8 37.7 + - + +
155B GLY* 3.1 33.2 - - - +
157B TYR* 3.6 41.0 + - + +
159B HIS* 3.9 8.7 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il