Contacts of the helix formed by residues 76 - 125 (chain D) in PDB entry 5HMG
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ARG 76 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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74D GLU 3.9 0.2 + - - -
75D GLY* 1.3 71.3 - - - +
77D ILE* 1.3 63.0 + - - +
79D ASP* 3.3 11.4 + - - +
80D LEU* 3.2 20.8 + - - +
104E ASP* 4.8 3.3 + - - +
106E ALA* 3.9 31.2 - - + +
107E SER* 2.8 23.1 + - - +
110E SER* 4.8 1.1 - - - -
70F PHE* 3.9 7.9 - - - -
74F GLU* 2.7 45.0 + - - -
77F ILE* 3.8 21.5 - - + +
78F GLN* 4.1 5.3 - - - +
81F GLU* 2.7 42.6 + - - +
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Residues in contact with ILE 77 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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76B ARG* 3.8 40.8 - - + +
77B ILE* 4.0 16.2 - - + -
80B LEU* 3.8 24.2 - - + -
74D GLU* 4.5 11.7 - - + +
75D GLY 4.8 0.7 - - - +
76D ARG* 1.3 77.1 - - - +
78D GLN* 1.3 66.2 + - + +
80D LEU* 3.1 8.4 + - + +
81D GLU* 3.0 23.0 + - - +
107E SER* 4.9 0.2 + - - -
77F ILE* 3.8 28.0 - - + -
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Residues in contact with GLN 78 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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70D PHE* 3.3 38.2 - - + +
72D GLU 2.9 27.8 + - - +
73D VAL* 4.9 3.1 - - - +
74D GLU* 3.2 40.4 + - + +
75D GLY 3.0 9.0 + - - +
77D ILE* 1.3 80.4 - - - +
79D ASP* 1.4 58.2 + - - +
81D GLU* 3.2 12.3 + - - +
82D LYS* 2.9 55.8 + - - +
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Residues in contact with ASP 79 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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75D GLY* 2.9 20.1 + - - +
76D ARG* 3.3 12.4 - - - +
78D GLN* 1.4 78.9 - - - +
80D LEU* 1.3 55.9 + - - +
82D LYS* 3.5 9.0 + - - +
83D TYR* 3.0 27.0 + - - +
110E SER* 2.7 33.8 + - - -
114E SER* 5.3 0.2 + - - -
64F HIS* 3.4 20.4 + - - -
65F GLN 4.3 11.6 - - - +
66F ILE* 3.6 9.6 - - + +
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Residues in contact with LEU 80 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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80B LEU* 3.7 14.4 - - + -
76D ARG 3.2 7.5 + - - +
77D ILE* 3.1 9.3 + - + +
79D ASP* 1.3 77.5 - - - +
81D GLU* 1.3 60.9 + - - +
83D TYR* 3.1 1.9 + - - +
84D VAL* 2.9 37.5 + - + +
66F ILE* 3.7 28.9 - - + +
77F ILE* 3.9 20.2 - - + -
80F LEU* 3.7 29.8 - - + -
81F GLU* 4.0 21.3 - - + +
84F VAL* 4.1 26.9 - - + -
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Residues in contact with GLU 81 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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76B ARG* 2.8 53.7 + - - +
80B LEU* 4.1 29.3 - - + +
66D ILE* 4.0 17.6 - - + +
67D GLU* 4.7 8.3 + - - +
70D PHE* 3.3 24.2 - - + -
77D ILE* 3.0 13.5 + - - +
78D GLN* 3.2 15.4 + - - +
80D LEU* 1.3 76.5 - - - +
82D LYS* 1.3 62.5 + - - +
84D VAL* 3.4 2.6 + - - +
85D GLU* 3.3 19.9 + - - +
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Residues in contact with LYS 82 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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68D LYS 6.0 0.2 - - - +
70D PHE* 3.5 27.7 - - + +
78D GLN* 2.9 44.9 + - - +
79D ASP* 3.9 7.4 + - - +
81D GLU* 1.3 76.5 - - - +
83D TYR* 1.3 55.1 + - - +
85D GLU* 3.4 5.1 + - - +
86D ASP* 2.9 30.9 + - - +
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Residues in contact with TYR 83 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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79D ASP 3.0 8.6 + - - +
80D LEU 3.1 3.3 + - - +
82D LYS* 1.3 71.7 - - - +
84D VAL* 1.3 67.2 + - - +
86D ASP* 4.5 7.9 - - - +
87D THR* 2.9 42.8 + - + +
62F LYS* 6.3 1.6 - - + -
65F GLN* 3.6 40.0 + - + -
66F ILE* 3.4 47.8 - - + -
68F LYS* 3.1 11.2 + - - -
84F VAL* 3.7 16.6 - - + -
85F GLU* 2.5 30.2 + - - -
88F LYS* 2.6 27.1 + - + -
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Residues in contact with VAL 84 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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80B LEU* 4.2 10.1 - - + -
83B TYR* 3.7 30.1 - - + -
84B VAL* 3.8 20.4 - - + -
87B THR* 5.0 4.9 - - - +
66D ILE* 4.4 2.9 - - + -
80D LEU* 2.9 21.0 + - + +
81D GLU 3.8 4.7 - - - +
82D LYS 3.4 0.2 - - - -
83D TYR* 1.3 74.8 - - - +
85D GLU* 1.3 58.7 + - - +
87D THR* 3.2 6.9 + - - -
88D LYS* 3.0 28.2 + - + +
84F VAL* 3.7 37.9 - - + -
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Residues in contact with GLU 85 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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83B TYR* 2.7 32.3 + - - -
299C LYS* 3.9 14.0 - - + +
308C TYR* 5.9 1.0 - - - +
66D ILE* 5.0 3.1 - - + +
68D LYS* 2.8 45.2 + - + +
81D GLU 3.3 13.2 + - - +
82D LYS* 4.0 4.3 - - - +
83D TYR 3.3 0.4 - - - -
84D VAL* 1.3 75.8 - - - +
86D ASP* 1.3 66.5 + - - +
88D LYS* 3.0 15.8 + - - +
89D ILE* 2.9 46.3 + - + +
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Residues in contact with ASP 86 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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310C LYS* 3.4 15.9 + - - -
82D LYS 2.9 18.6 + - - +
83D TYR* 4.0 8.0 - - + +
85D GLU* 1.3 76.0 - - - +
87D THR* 1.3 69.3 + - - +
89D ILE* 3.2 7.1 + - - +
90D ASP* 3.0 22.2 + - - +
62F LYS* 2.7 43.5 + - - +
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Residues in contact with THR 87 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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83D TYR* 2.9 37.7 + - + +
84D VAL* 3.2 14.6 + - - -
86D ASP* 1.3 82.6 - - - +
88D LYS* 1.3 59.9 + - - +
90D ASP* 3.5 6.4 + - - +
91D LEU* 3.1 31.4 + - - +
84F VAL* 5.0 3.8 - - - +
88F LYS* 3.6 48.7 - - + +
92F TRP* 5.5 1.2 + - - -
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Residues in contact with LYS 88 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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83B TYR* 2.7 30.9 + - + +
87B THR* 3.8 31.6 - - + +
91B LEU* 5.3 4.9 - - + -
62D LYS* 6.1 3.0 - - - +
65D GLN* 4.5 5.5 + - - -
68D LYS* 4.7 1.0 - - - +
84D VAL* 3.0 14.6 + - + +
85D GLU* 3.0 29.5 + - - +
87D THR* 1.3 77.6 + - - +
89D ILE* 1.3 59.0 + - - +
91D LEU* 3.2 8.2 + - - +
92D TRP* 2.9 48.9 + - + +
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Residues in contact with ILE 89 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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299C LYS* 4.1 14.1 - - + -
308C TYR* 3.8 42.3 - - + +
309C VAL 4.9 0.7 - - - -
310C LYS* 3.6 37.7 - - + +
85D GLU* 2.9 46.5 + - + +
86D ASP* 3.6 6.3 - - - +
88D LYS* 1.3 75.7 - - + +
90D ASP* 1.3 65.4 + - - +
92D TRP* 3.8 4.5 - - - +
93D SER* 2.9 30.4 + - - +
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Residues in contact with ASP 90 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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310C LYS* 2.6 39.7 + - - +
86D ASP* 3.0 16.9 + - - +
87D THR* 4.1 5.8 - - - +
89D ILE* 1.3 77.1 - - - +
91D LEU* 1.3 63.8 + - + +
93D SER* 3.3 5.6 + - - -
94D TYR* 3.0 23.6 + - - +
307E LYS* 5.9 0.4 - - - -
60F ASN* 3.4 14.1 + - - +
62F LYS* 2.8 33.2 + - - -
92F TRP* 4.3 13.9 - - + +
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Residues in contact with LEU 91 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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91B LEU* 3.6 19.3 - - + -
87D THR* 3.1 24.1 + - - +
88D LYS* 3.6 3.6 - - - +
90D ASP* 1.3 76.1 - - - +
92D TRP* 1.3 63.7 + - - +
94D TYR* 3.2 4.2 + - - +
95D ASN* 3.0 29.1 + - - +
88F LYS* 5.2 9.0 - - + +
91F LEU* 3.5 40.4 - - + -
92F TRP* 3.3 42.4 - - + +
95F ASN* 3.7 18.4 - - - +
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Residues in contact with TRP 92 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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87B THR* 6.3 0.6 - - - -
90B ASP* 4.4 14.1 - - + +
91B LEU* 3.3 30.2 - - + +
94B TYR* 3.6 42.4 - + + -
294C PHE* 4.1 15.7 - + - -
307C LYS* 3.6 45.8 - - + +
308C TYR 4.1 15.7 - - - +
309C VAL* 3.8 5.1 - - + +
88D LYS* 2.9 44.4 + - + +
89D ILE* 4.1 3.4 - - - +
91D LEU* 1.3 76.5 - - - +
93D SER* 1.3 56.9 + - - +
95D ASN* 3.2 22.1 + - + +
96D ALA* 2.9 28.2 + - - +
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Residues in contact with SER 93 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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309C VAL* 3.6 6.0 - - - +
310C LYS* 2.8 40.4 + - - +
311C GLN* 2.9 37.2 + - - -
89D ILE 2.9 19.0 + - - -
90D ASP* 3.7 7.0 - - - -
92D TRP* 1.3 73.9 - - - +
94D TYR* 1.3 63.3 + - - +
96D ALA 3.2 1.2 + - - -
97D GLU* 3.0 9.6 + - - +
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Residues in contact with TYR 94 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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90D ASP 3.0 14.1 + - - +
91D LEU 3.5 7.4 - - - +
93D SER* 1.3 74.1 - - - +
95D ASN* 1.3 71.3 + - - +
97D GLU* 3.2 7.5 + - + +
98D LEU* 2.9 57.4 + - + +
294E PHE* 5.9 2.9 - + - -
92F TRP* 3.7 26.5 - + + -
95F ASN* 3.2 45.6 + - + -
99F LEU* 3.7 35.4 - - + +
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Residues in contact with ASN 95 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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91B LEU* 3.9 16.0 - - - +
94B TYR* 3.2 43.2 + - + -
95B ASN* 4.5 6.2 + - - +
294C PHE* 5.1 0.7 - - + -
91D LEU* 3.0 19.4 + - - +
92D TRP* 3.2 27.6 + - + +
94D TYR* 1.3 89.4 - - - +
96D ALA* 1.3 62.7 + - - +
98D LEU* 4.2 4.1 - - - +
99D LEU* 2.9 26.4 + - - +
95F ASN* 4.5 8.1 + - - +
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Residues in contact with ALA 96 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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294C PHE* 3.6 34.9 - - + -
309C VAL* 3.9 10.8 - - + -
311C GLN* 4.3 0.2 - - - +
314C LEU* 3.5 24.5 - - + -
92D TRP 2.9 15.7 + - - +
93D SER 3.2 6.5 + - - +
95D ASN* 1.3 72.8 - - - +
97D GLU* 1.3 62.3 + - - +
99D LEU* 3.6 2.2 - - - +
100D VAL* 3.1 30.0 + - - +
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Residues in contact with GLU 97 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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27C LYS* 2.9 27.2 + - - +
311C GLN* 3.2 27.3 + - - +
314C LEU* 4.0 11.0 - - - +
93D SER 3.0 10.4 + - - +
94D TYR* 3.7 6.5 - - + +
96D ALA* 1.3 76.0 - - - +
98D LEU* 1.3 65.2 + - - +
100D VAL* 3.6 4.0 + - - +
101D ALA* 3.2 23.6 + - - +
54F ARG* 2.7 38.9 + - - +
58F LYS* 3.6 22.2 + - - +
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Residues in contact with LEU 98 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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98B LEU* 5.8 7.4 - - + -
29C ILE* 5.9 1.8 - - + -
94D TYR* 2.9 49.8 + - + +
95D ASN* 4.2 3.6 - - - +
97D GLU* 1.3 77.4 - - - +
99D LEU* 1.3 63.6 + - - +
101D ALA* 3.3 5.7 + - + +
102D LEU* 2.9 58.8 + - + +
98F LEU* 5.7 7.9 - - + -
99F LEU* 4.3 22.2 - - + -
102F LEU* 4.9 9.2 - - + -
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Residues in contact with LEU 99 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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94B TYR* 3.9 23.6 - - + +
98B LEU* 4.4 20.2 - - + -
42C LEU* 5.2 0.9 - - + -
294C PHE* 4.2 24.5 - - + -
316C LEU* 5.9 0.4 - - + -
55D VAL* 3.8 28.7 - - + -
95D ASN 2.9 18.1 + - - +
96D ALA 3.6 2.9 - - - +
98D LEU* 1.3 77.2 - - - +
100D VAL* 1.3 67.9 + - + +
102D LEU* 3.6 6.3 - - + +
103D GLU* 2.9 48.3 + - + +
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Residues in contact with VAL 100 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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27C LYS* 5.0 13.5 - - + -
42C LEU* 3.7 29.4 - - + -
294C PHE* 5.6 0.4 - - + -
314C LEU* 4.0 29.8 - - + -
315C LYS 4.2 21.5 - - - +
316C LEU* 4.4 5.2 - - + -
96D ALA* 3.1 15.4 + - + +
97D GLU* 3.9 7.9 - - - +
99D LEU* 1.3 77.3 - - + +
101D ALA* 1.3 61.8 + - + +
103D GLU* 4.1 6.1 - - - -
104D ASN* 2.8 39.6 + - - +
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Residues in contact with ALA 101 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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27C LYS 4.1 11.4 - - - -
28C THR 3.7 11.9 - - - +
29C ILE* 3.9 12.9 + - + +
97D GLU 3.2 15.7 + - - +
98D LEU* 3.6 8.3 - - + +
100D VAL* 1.3 82.6 - - - +
102D LEU* 1.3 62.7 + - - +
104D ASN* 3.2 1.6 + - - +
105D GLN* 3.0 25.5 + - - +
54F ARG* 3.7 21.1 - - - +
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Residues in contact with LEU 102 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29A ILE* 6.5 0.4 - - - -
98B LEU* 5.0 9.6 - - + -
102B LEU* 4.0 28.3 - - + -
29C ILE* 3.6 27.1 - - + +
98D LEU* 2.9 39.9 + - + +
99D LEU* 3.6 6.5 - - + +
101D ALA* 1.3 75.1 - - - +
103D GLU* 1.3 64.4 + - + +
105D GLN* 3.4 3.1 - - - +
106D HIS* 3.1 22.3 + - - +
102F LEU* 3.9 35.4 - - + -
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Residues in contact with GLU 103 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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29A ILE* 3.6 22.4 - - - +
316C LEU* 3.8 23.3 - - + -
51D LYS* 2.8 48.3 + - + +
55D VAL* 4.9 7.8 - - + +
99D LEU* 2.9 41.1 + - + +
100D VAL 3.7 3.8 - - - +
102D LEU* 1.3 76.7 - - + +
104D ASN* 1.3 51.1 + - - +
106D HIS* 2.8 25.5 + - - +
107D THR* 2.8 21.2 + - - +
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Residues in contact with ASN 104 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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26C VAL* 3.4 22.5 - - + +
27C LYS 2.8 32.3 + - - +
28C THR* 3.8 6.7 - - - +
315C LYS 3.1 21.8 + - - -
316C LEU* 3.6 9.0 - - - +
317C ALA* 2.8 26.1 + - + +
100D VAL* 2.8 26.0 + - - +
101D ALA 3.8 0.2 - - - +
103D GLU* 1.3 68.3 - - - +
105D GLN* 1.3 65.9 + - - +
107D THR* 3.2 7.5 + - - -
108D ILE* 3.1 28.8 + - - +
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Residues in contact with GLN 105 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28C THR* 3.1 31.7 + - - +
29C ILE* 3.1 38.0 + - + +
30C THR* 3.3 11.8 + - - -
101D ALA 3.0 16.2 + - - +
102D LEU 3.4 5.8 - - - +
104D ASN* 1.3 78.7 - - - +
106D HIS* 1.3 62.3 + - - +
108D ILE* 3.3 10.5 + - - +
109D ASP* 3.2 32.9 + - - +
106F HIS* 4.1 17.5 + - + +
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Residues in contact with HIS 106 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29A ILE* 4.0 20.3 - - + +
30A THR* 4.0 11.2 - - + -
2B LEU* 5.0 14.7 - - + +
105B GLN* 4.2 22.3 + - + +
109B ASP* 5.1 3.4 + - - -
51D LYS* 2.7 26.0 + - - +
102D LEU 3.1 8.6 + - - +
103D GLU* 2.8 10.7 + - - +
105D GLN* 1.3 79.4 - - - +
107D THR* 1.3 57.5 + - - +
109D ASP* 3.3 7.6 + - + +
110D LEU* 2.9 52.1 + - + +
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Residues in contact with THR 107 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316C LEU* 6.0 0.3 - - - +
317C ALA* 3.8 26.4 + - + +
319C GLY 3.9 19.1 - - - +
48D ILE* 4.0 28.3 - - + -
51D LYS* 2.9 28.6 + - - +
103D GLU 2.8 12.6 + - - -
104D ASN* 3.2 9.3 + - - -
106D HIS* 1.3 68.4 - - - +
108D ILE* 1.3 61.8 + - - +
110D LEU* 3.6 5.5 - - - +
111D THR* 3.0 32.6 + - + +
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Residues in contact with ILE 108 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26C VAL* 5.1 1.3 - - + -
28C THR* 3.9 11.0 - - + +
34C ILE* 3.8 39.5 - - + -
36C VAL* 4.3 20.6 - - + -
317C ALA* 5.6 1.1 - - + -
319C GLY 5.1 2.5 - - - +
320C MET* 5.4 1.1 - - - +
321C ARG* 4.0 27.6 - - + +
1D GLY* 5.1 12.9 - - - +
6D ILE* 5.5 0.5 - - - +
104D ASN 3.1 16.3 + - - +
105D GLN* 3.7 12.8 - - - +
107D THR* 1.3 77.2 - - - +
109D ASP* 1.3 64.9 + - - +
111D THR* 3.2 6.7 + - - -
112D GLY* 3.1 19.9 + - - -
----------------------------------------------------------
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Residues in contact with ASP 109 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2B LEU* 4.6 11.0 - - + -
1D GLY* 3.6 9.6 - - - -
2D LEU* 3.1 52.2 + - + +
3D PHE* 4.1 6.6 - - + -
105D GLN* 3.2 31.6 + - - +
106D HIS* 3.8 10.7 - - + +
107D THR 3.3 0.4 - - - -
108D ILE* 1.3 75.0 - - - +
110D LEU* 1.3 55.9 + - - +
112D GLY* 3.3 1.8 + - - -
113D SER* 2.8 35.4 + - - -
106F HIS* 5.2 4.3 + - - -
----------------------------------------------------------
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Residues in contact with LEU 110 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30A THR* 4.1 2.5 - - + -
2B LEU* 4.5 8.0 - - + +
44D ALA* 4.1 11.0 - - - +
47D GLN* 3.7 52.0 - - + +
48D ILE* 4.3 6.1 - - + -
51D LYS* 4.1 13.5 - - - +
106D HIS* 2.9 45.8 + - + +
107D THR* 3.6 5.2 - - - +
109D ASP* 1.3 75.6 - - - +
111D THR* 1.3 77.8 + - + +
113D SER* 3.1 16.4 + - - -
114D GLU* 3.1 17.5 + - - +
----------------------------------------------------------
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Residues in contact with THR 111 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319C GLY 4.4 0.7 - - - -
320C MET* 3.4 38.8 - - + +
321C ARG 4.6 0.3 + - - -
6D ILE* 3.8 3.3 - - - +
21D TRP* 4.2 5.8 - - + -
22D TYR* 2.9 33.5 + - - +
44D ALA* 4.5 0.9 - - + -
48D ILE* 3.9 27.6 - - + -
107D THR* 3.0 17.3 + - + +
108D ILE* 3.2 7.1 + - - -
110D LEU* 1.3 79.6 - - + +
112D GLY* 1.3 63.3 + - - +
114D GLU* 3.3 2.2 + - - -
115D MET 3.2 12.6 + - - -
----------------------------------------------------------
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Residues in contact with GLY 112 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3D PHE* 4.4 9.8 - - - +
5D ALA* 4.4 2.5 - - - +
6D ILE* 3.6 22.2 - - - +
108D ILE 3.1 11.0 + - - -
109D ASP* 3.6 4.5 - - - -
110D LEU 3.2 0.2 - - - -
111D THR* 1.3 83.6 + - - +
113D SER* 1.3 59.7 + - - +
115D MET* 3.3 4.5 + - - +
116D ASN* 3.2 22.5 + - - +
----------------------------------------------------------
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Residues in contact with SER 113 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2B LEU* 2.7 38.8 + - - +
3D PHE* 3.8 20.6 - - - -
109D ASP 2.8 16.5 + - - -
110D LEU* 3.3 13.9 - - - -
112D GLY* 1.3 70.5 - - - +
114D GLU* 1.3 53.9 + - - +
116D ASN* 3.0 5.5 + - - +
117D LYS* 2.8 48.3 + - - +
----------------------------------------------------------
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Residues in contact with GLU 114 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22D TYR* 3.5 29.8 - - + +
40D SER* 4.6 11.8 - - - +
43D ALA* 3.6 23.3 - - + +
44D ALA* 4.2 13.0 - - - +
47D GLN* 3.3 24.9 + - - +
110D LEU 3.1 12.3 + - - +
111D THR 3.3 0.6 + - - +
113D SER* 1.3 76.8 + - - +
115D MET* 1.3 63.0 + - - +
117D LYS* 2.7 37.6 + - - +
118D LEU* 3.0 23.0 + - - +
----------------------------------------------------------
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Residues in contact with MET 115 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15C LEU* 3.9 26.7 - - + -
16C GLY 3.6 30.7 - - - +
17C HIS* 3.9 7.4 - - - -
5D ALA* 3.7 12.6 - - + -
6D ILE* 4.0 19.7 - - + -
10D ILE* 3.7 33.7 - - + -
22D TYR* 3.8 19.0 - - + -
111D THR 3.2 6.8 + - - +
112D GLY 3.5 9.0 - - - +
113D SER 3.1 0.6 - - - -
114D GLU* 1.3 73.8 - - - +
116D ASN* 1.3 64.0 + - - +
118D LEU* 3.0 21.6 + - + +
119D PHE* 3.1 10.4 + - + +
----------------------------------------------------------
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Residues in contact with ASN 116 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2B LEU 5.9 0.8 + - - -
3D PHE* 4.2 31.8 - - + +
5D ALA* 4.1 12.6 - - + -
9D PHE* 4.0 19.6 - - - -
112D GLY 3.2 8.7 + - - +
113D SER* 3.0 7.9 + - - +
115D MET* 1.3 78.8 - - - +
117D LYS* 1.3 67.1 + - - +
119D PHE* 3.1 9.5 + - - +
120D GLU* 2.9 36.6 + - - +
124F ARG* 5.4 2.6 + - - -
----------------------------------------------------------
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Residues in contact with LYS 117 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1B GLY 3.1 25.4 + - - +
2B LEU 3.6 9.9 - - - +
3B PHE 4.5 4.3 - - - +
4B GLY* 3.8 22.7 - - - +
113D SER* 2.8 39.3 + - - +
114D GLU* 2.7 39.4 + - - +
116D ASN* 1.3 77.0 - - - +
118D LEU* 1.3 61.9 + - - +
120D GLU* 3.3 5.8 + - - +
121D LYS* 2.9 25.9 + - - +
----------------------------------------------------------
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Residues in contact with LEU 118 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15C LEU* 3.7 17.0 - - + -
22D TYR* 3.8 18.6 - - + -
23D GLY* 4.3 6.7 - - - +
24D PHE* 3.6 27.8 - - + -
37D ASP* 3.7 27.6 - - + +
40D SER* 3.8 20.6 - - - +
114D GLU 3.0 12.3 + - - +
115D MET* 3.0 12.3 + - + +
117D LYS* 1.3 73.3 - - - +
119D PHE* 1.3 58.7 + - - +
121D LYS* 3.3 14.8 + - + +
122D THR* 2.9 35.7 + - - +
----------------------------------------------------------
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Residues in contact with PHE 119 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15C LEU* 3.8 24.4 - - + +
9D PHE* 3.7 24.0 - + + -
10D ILE* 4.9 0.7 - - + -
115D MET* 3.1 13.6 + - + +
116D ASN* 3.4 13.5 - - - +
118D LEU* 1.3 77.7 - - - +
120D GLU* 1.3 70.9 + - + +
122D THR* 3.0 5.9 + - - -
123D ARG* 2.8 30.3 + - + -
132D GLU* 3.4 40.2 - - + -
136D GLY* 3.6 32.3 - - - -
138D PHE* 3.4 29.6 - + - -
124F ARG* 4.2 7.6 - - - -
----------------------------------------------------------
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Residues in contact with GLU 120 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116D ASN* 2.9 34.0 + - - +
117D LYS* 3.7 6.1 - - - +
119D PHE* 1.3 83.2 - - + +
121D LYS* 1.3 57.9 + - - +
123D ARG* 2.6 55.6 + - - +
124D ARG* 2.9 50.3 + - - +
123F ARG* 5.8 1.4 + - - -
124F ARG* 5.2 4.9 + - - -
----------------------------------------------------------
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Residues in contact with LYS 121 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39D LYS* 4.9 21.6 - - - +
117D LYS 2.9 18.6 + - - +
118D LEU* 3.4 15.2 - - + +
120D GLU* 1.3 74.9 - - - +
122D THR* 1.3 66.9 + - - +
124D ARG* 3.2 10.9 + - - +
125D GLN* 3.1 32.3 + - + +
155D GLY* 5.6 8.3 - - - -
----------------------------------------------------------
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Residues in contact with THR 122 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13C LEU* 4.0 23.1 - - + -
15C LEU* 4.0 9.1 - - + +
24D PHE* 3.7 19.5 - - + -
118D LEU* 2.9 19.4 + - - +
119D PHE 3.5 7.2 - - - -
121D LYS* 1.3 75.3 - - - +
123D ARG* 1.3 64.8 + - - +
125D GLN* 3.2 13.2 + - - +
126D LEU* 3.2 22.9 + - + +
138D PHE* 3.6 24.7 - - + -
152D ILE* 4.3 10.3 + - + +
----------------------------------------------------------
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Residues in contact with ARG 123 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120B GLU* 5.8 1.2 + - - -
123B ARG* 5.5 8.1 - - - +
132B GLU* 3.0 27.9 + - - +
119D PHE* 2.8 19.7 + - + +
120D GLU* 2.6 69.4 + - - +
122D THR* 1.3 74.3 - - - +
124D ARG* 1.3 80.2 + - - +
126D LEU* 3.1 15.7 + - - +
127D ARG* 3.6 8.8 + - - +
132D GLU* 5.4 4.9 - - + -
138D PHE* 3.5 28.4 - - + -
123F ARG* 5.5 6.2 - - - +
----------------------------------------------------------
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Residues in contact with ARG 124 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9B PHE* 3.6 36.4 - - - +
116B ASN* 5.4 2.4 + - - -
119B PHE* 4.1 13.1 - - - -
120B GLU* 5.2 4.8 + - - -
132B GLU* 2.7 48.5 + - + +
133B MET 5.6 1.0 - - - -
134B GLY* 4.0 21.9 + - - +
120D GLU* 2.9 39.8 + - - +
121D LYS* 3.7 6.8 - - - +
123D ARG* 1.3 100.6 - - - +
125D GLN* 1.3 62.9 + - - +
127D ARG* 3.3 21.9 + - - +
----------------------------------------------------------
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Residues in contact with GLN 125 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121D LYS* 3.1 18.4 + - + +
122D THR* 3.4 15.5 + - - +
123D ARG 3.2 0.2 - - - -
124D ARG* 1.3 79.1 - - - +
126D LEU* 1.3 58.9 + - + +
127D ARG* 3.0 7.0 + - - +
152D ILE* 2.8 37.4 + - + +
155D GLY* 3.1 33.1 - - - +
157D TYR* 3.6 38.4 + - + +
159D HIS* 3.9 9.0 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il