Contacts of the helix formed by residues 76 - 125 (chain F) in PDB entry 5HMG
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ARG 76 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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104A ASP* 4.7 4.4 + - - +
106A ALA* 4.1 30.2 - - + +
107A SER* 2.7 21.6 + - - +
110A SER* 5.0 0.4 - - - -
70B PHE* 4.2 4.8 - - - -
74B GLU* 2.6 44.4 + - - -
77B ILE* 3.6 30.5 - - + +
78B GLN* 4.0 2.8 - - - +
81B GLU* 2.7 43.1 + - - +
74F GLU 3.9 0.2 + - - -
75F GLY* 1.3 72.4 - - - +
77F ILE* 1.3 63.4 + - - +
79F ASP* 3.3 11.6 + - - +
80F LEU* 3.2 19.9 + - - +
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Residues in contact with ILE 77 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77B ILE* 3.9 15.5 - - + -
76D ARG* 3.8 38.1 - - + +
77D ILE* 3.8 34.5 - - + -
80D LEU* 3.9 15.7 - - + -
74F GLU* 4.5 11.7 - - + +
75F GLY 4.8 0.4 - - - +
76F ARG* 1.3 78.4 - - - +
78F GLN* 1.3 65.7 + - + +
80F LEU* 3.1 8.2 + - + +
81F GLU* 3.0 23.6 + - - +
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Residues in contact with GLN 78 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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70F PHE* 3.3 37.5 - - + +
72F GLU 2.9 28.2 + - - +
73F VAL* 4.9 2.8 - - - +
74F GLU* 3.1 40.4 + - + +
75F GLY 3.0 8.4 + - - +
77F ILE* 1.3 81.9 - - - +
79F ASP* 1.3 57.5 + - - +
81F GLU* 3.2 11.3 + - - +
82F LYS* 2.9 55.4 + - - +
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Residues in contact with ASP 79 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110A SER* 2.8 33.7 + - - -
64B HIS* 3.6 17.6 + - - -
65B GLN 4.5 6.8 - - - +
66B ILE* 3.6 13.4 - - + +
75F GLY* 2.9 20.6 + - - +
76F ARG* 3.3 12.6 - - - +
78F GLN* 1.3 76.1 - - - +
80F LEU* 1.3 55.3 + - - +
82F LYS* 3.5 8.4 + - - +
83F TYR* 3.0 27.4 + - - +
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Residues in contact with LEU 80 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66B ILE* 3.9 19.2 - - + +
77B ILE* 3.8 21.5 - - + -
80B LEU* 3.5 30.7 - - + -
81B GLU* 4.1 29.2 - - + +
84B VAL* 4.1 27.1 - - + -
80D LEU* 3.7 14.1 - - + -
76F ARG 3.2 7.2 + - - +
77F ILE* 3.1 9.2 + - + +
79F ASP* 1.3 75.2 - - - +
81F GLU* 1.3 67.3 + - - +
83F TYR* 3.1 1.7 + - - +
84F VAL* 2.9 30.5 + - + +
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Residues in contact with GLU 81 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76D ARG* 2.7 57.4 + - - +
80D LEU* 4.0 28.6 - - + +
66F ILE* 4.0 16.2 - - + +
67F GLU* 4.7 8.3 + - - +
70F PHE* 3.3 22.1 - - + -
77F ILE* 3.0 13.7 + - - +
78F GLN* 3.2 15.2 + - - +
80F LEU* 1.3 75.9 - - - +
82F LYS* 1.3 63.7 + - - +
84F VAL* 3.4 2.8 + - - +
85F GLU* 3.3 20.1 + - - +
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Residues in contact with LYS 82 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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68F LYS 6.0 0.2 - - - +
70F PHE* 3.5 28.6 - - + +
78F GLN* 2.9 45.3 + - - +
79F ASP* 3.9 7.4 + - - +
81F GLU* 1.3 77.2 - - - +
83F TYR* 1.3 56.0 + - - +
85F GLU* 3.4 3.8 + - - +
86F ASP* 3.0 30.8 + - - +
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Residues in contact with TYR 83 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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62B LYS* 6.5 0.2 - - + -
65B GLN* 3.7 36.1 + - + -
66B ILE* 3.4 50.7 - - + -
68B LYS* 3.3 9.7 + - - -
84B VAL* 3.5 22.9 - - + -
85B GLU* 2.5 29.8 + - - -
88B LYS* 2.7 27.2 + - + -
79F ASP 3.0 7.2 + - - +
80F LEU* 3.1 3.6 + - - +
82F LYS* 1.3 73.9 - - - +
84F VAL* 1.3 65.8 + - + +
86F ASP* 4.5 7.9 - - - +
87F THR* 2.9 42.0 + - + +
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Residues in contact with VAL 84 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84B VAL* 3.7 25.1 - - + -
80D LEU* 4.1 11.0 - - + -
83D TYR* 3.7 31.0 - - + -
84D VAL* 3.7 33.4 - - + -
87D THR* 5.0 4.3 - - - +
66F ILE* 4.4 2.7 - - + -
80F LEU* 2.9 18.6 + - + +
81F GLU 3.8 4.7 - - - +
83F TYR* 1.3 74.3 - - - +
85F GLU* 1.3 58.7 + - - +
87F THR* 3.2 7.2 + - - -
88F LYS* 3.0 27.9 + - - +
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Residues in contact with GLU 85 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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83D TYR* 2.5 34.8 + - - -
299E LYS* 3.9 13.2 - - + +
308E TYR* 5.9 0.9 - - - +
66F ILE* 4.9 3.4 - - + -
68F LYS* 2.7 45.2 + - + +
81F GLU 3.3 11.9 + - - +
82F LYS* 4.0 4.5 - - - +
83F TYR 3.3 0.6 - - - -
84F VAL* 1.3 76.6 - - - +
86F ASP* 1.3 65.8 + - - +
88F LYS* 3.0 15.5 + - - +
89F ILE* 2.9 44.8 + - + +
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Residues in contact with ASP 86 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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62B LYS* 2.8 41.2 + - - +
310E LYS* 3.4 15.6 + - - -
82F LYS 3.0 18.6 + - - +
83F TYR* 4.0 8.5 - - + +
85F GLU* 1.3 75.1 - - - +
87F THR* 1.3 69.2 + - + +
89F ILE* 3.3 7.8 + - - +
90F ASP* 3.0 21.8 + - - +
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Residues in contact with THR 87 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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84B VAL* 4.8 4.9 - - - +
88B LYS* 3.7 46.7 - - + +
92B TRP* 6.3 0.4 - - - -
83F TYR* 2.9 41.1 + - + +
84F VAL* 3.2 10.0 + - - -
86F ASP* 1.3 81.5 - - - +
88F LYS* 1.3 61.9 + - - +
90F ASP* 3.4 6.6 + - - +
91F LEU* 3.1 32.8 + - - +
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Residues in contact with LYS 88 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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83D TYR* 2.6 30.6 + - + +
87D THR* 3.6 34.6 - - + +
91D LEU* 5.2 4.5 - - + -
62F LYS* 6.0 2.6 - - - +
65F GLN* 4.5 4.9 + - - -
68F LYS* 4.7 1.0 - - - +
84F VAL 3.0 15.2 + - - +
85F GLU* 3.3 29.1 + - - +
87F THR* 1.3 77.6 + - - +
89F ILE* 1.3 65.2 + - - +
91F LEU* 3.2 10.1 + - - +
92F TRP* 3.0 43.2 + - + +
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Residues in contact with ILE 89 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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299E LYS* 4.0 14.8 - - + -
308E TYR* 3.8 43.2 - - + +
309E VAL 4.9 0.2 - - - -
310E LYS* 3.6 36.6 - - + +
85F GLU* 2.9 47.3 + - + +
86F ASP* 3.7 7.0 - - - +
88F LYS* 1.3 78.3 - - + +
90F ASP* 1.3 63.1 + - - +
92F TRP* 3.8 4.9 - - - +
93F SER* 2.9 30.7 + - - +
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Residues in contact with ASP 90 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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307A LYS* 6.0 0.4 - - - -
60B ASN* 3.5 14.3 + - - +
62B LYS* 2.7 31.6 + - - -
92B TRP* 4.4 14.7 - - + +
310E LYS* 2.6 40.0 + - - +
86F ASP* 3.0 16.7 + - - +
87F THR* 4.0 6.2 - - - +
89F ILE* 1.3 77.4 - - - +
91F LEU* 1.3 61.8 + - + +
93F SER* 3.3 6.1 + - - -
94F TYR* 3.0 24.1 + - - +
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Residues in contact with LEU 91 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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88B LYS* 5.2 7.0 - - + -
91B LEU* 3.4 40.2 - - + -
92B TRP* 3.4 39.7 - - + +
95B ASN* 3.9 17.0 - - - +
91D LEU* 3.5 20.0 - - + -
87F THR* 3.1 25.8 + - - +
88F LYS* 3.6 3.8 - - - +
90F ASP* 1.3 76.2 - - + +
92F TRP* 1.3 61.5 + - - +
94F TYR* 3.2 5.5 + - - +
95F ASN* 3.0 28.5 + - - +
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Residues in contact with TRP 92 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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87D THR* 5.5 1.6 + - - -
90D ASP* 4.3 18.8 - - + +
91D LEU* 3.3 30.2 - - + +
94D TYR* 3.7 38.8 - + + -
294E PHE* 4.2 15.5 - + - -
307E LYS* 3.6 45.8 - - + +
308E TYR 4.1 15.7 - - - +
309E VAL* 3.8 8.5 - - + +
88F LYS* 3.0 43.8 + - + +
89F ILE* 4.1 3.1 - - - +
91F LEU* 1.3 76.7 - - - +
93F SER* 1.3 55.9 + - - +
95F ASN* 3.2 24.6 + - + +
96F ALA* 2.9 24.6 + - - +
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Residues in contact with SER 93 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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309E VAL* 3.6 5.8 - - - -
310E LYS* 2.9 40.3 + - - +
311E GLN* 2.9 37.8 + - - -
89F ILE 2.9 18.8 + - - -
90F ASP* 3.7 7.2 - - - -
91F LEU 3.3 0.2 - - - -
92F TRP* 1.3 72.6 - - - +
94F TYR* 1.4 65.7 + - - +
96F ALA 3.2 1.2 + - - -
97F GLU* 3.0 9.7 + - - +
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Residues in contact with TYR 94 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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294A PHE* 5.9 2.5 - + - -
92B TRP* 3.6 27.1 - + + -
95B ASN* 3.1 45.7 + - + -
99B LEU* 3.9 33.1 - - + +
90F ASP 3.0 12.7 + - - +
91F LEU 3.2 7.6 + - - +
93F SER* 1.4 75.5 - - - +
95F ASN* 1.3 72.6 + - - +
97F GLU* 3.2 6.4 + - + +
98F LEU* 2.9 56.3 + - + +
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Residues in contact with ASN 95 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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95B ASN* 4.5 6.9 + - - +
91D LEU* 3.7 20.4 - - - +
94D TYR* 3.2 43.7 + - + -
95D ASN* 4.5 7.5 + - - +
294E PHE* 5.1 0.7 - - + -
91F LEU* 3.0 12.8 + - - +
92F TRP* 3.2 27.6 + - + +
94F TYR* 1.3 91.4 - - - +
96F ALA* 1.3 63.1 + - - +
98F LEU* 4.0 3.8 - - - +
99F LEU* 2.9 26.4 + - - +
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Residues in contact with ALA 96 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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294E PHE* 3.5 34.7 - - + -
309E VAL* 3.9 11.0 - - + -
311E GLN* 4.3 0.2 - - - +
314E LEU* 3.5 24.5 - - + -
92F TRP 2.9 15.7 + - - +
93F SER 3.2 5.6 + - - +
95F ASN* 1.3 73.1 - - - +
97F GLU* 1.3 62.6 + - - +
99F LEU* 3.3 1.8 + - - +
100F VAL* 3.1 29.3 + - - +
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Residues in contact with GLU 97 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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54B ARG* 2.8 35.5 + - - +
58B LYS* 3.5 21.4 + - - +
27E LYS* 2.9 29.7 + - - +
311E GLN* 3.2 31.5 + - - +
314E LEU* 4.0 7.6 - - - +
93F SER 3.0 10.0 + - - +
94F TYR* 3.7 6.7 - - + +
96F ALA* 1.3 75.0 - - - +
98F LEU* 1.3 65.5 + - - +
100F VAL* 3.5 3.9 + - - +
101F ALA* 3.1 23.6 + - - +
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Residues in contact with LEU 98 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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98B LEU* 5.6 8.1 - - + -
99B LEU* 4.4 22.4 - - + -
102B LEU* 4.9 9.4 - - + -
98D LEU* 5.7 7.6 - - + -
29E ILE* 5.9 1.6 - - + -
94F TYR* 2.9 51.1 + - + +
95F ASN* 4.2 3.8 - - - +
97F GLU* 1.3 76.5 - - - +
99F LEU* 1.3 63.5 + - - +
101F ALA* 3.3 6.7 + - + +
102F LEU* 3.0 59.3 + - + +
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Residues in contact with LEU 99 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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94D TYR* 3.7 25.6 - - + +
98D LEU* 4.3 20.0 - - + -
42E LEU* 5.7 0.2 - - + -
294E PHE* 4.2 23.8 - - + -
316E LEU* 6.0 0.2 - - + -
55F VAL* 3.8 28.7 - - + -
95F ASN 2.9 18.7 + - - +
96F ALA 3.5 2.9 - - - +
97F GLU 3.2 0.2 - - - -
98F LEU* 1.3 77.5 - - - +
100F VAL* 1.3 69.0 + - + +
102F LEU* 3.6 6.3 - - + +
103F GLU* 2.9 48.3 + - + +
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Residues in contact with VAL 100 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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27E LYS* 5.0 12.8 - - + -
42E LEU* 3.7 30.1 - - + -
294E PHE* 5.6 0.7 - - + -
314E LEU* 4.0 29.8 - - + -
315E LYS 4.2 20.9 - - - +
316E LEU* 4.4 5.6 - - + -
96F ALA* 3.1 15.4 + - - +
97F GLU* 3.9 8.1 - - - +
99F LEU* 1.3 78.6 - - + +
101F ALA* 1.3 62.4 + - + +
103F GLU* 4.1 6.5 - - - -
104F ASN* 2.8 39.4 + - - +
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Residues in contact with ALA 101 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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54B ARG* 3.7 20.6 - - - +
27E LYS 4.1 10.1 - - - -
28E THR 3.7 12.6 - - - +
29E ILE* 3.9 12.1 + - + +
97F GLU 3.1 18.8 + - - +
98F LEU* 3.6 8.7 - - + +
99F LEU 3.2 0.2 - - - -
100F VAL* 1.3 79.8 - - - +
102F LEU* 1.3 64.2 + - - +
104F ASN* 3.7 1.6 - - - +
105F GLN* 3.0 25.1 + - - +
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Residues in contact with LEU 102 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102B LEU* 3.9 23.3 - - + -
29C ILE* 6.5 1.1 - - - -
98D LEU* 4.9 11.7 - - + -
102D LEU* 3.9 39.5 - - + -
29E ILE* 3.6 27.5 - - + +
98F LEU* 3.0 44.1 + - + +
99F LEU* 3.6 5.6 - - + +
101F ALA* 1.3 74.3 - - - +
103F GLU* 1.3 65.7 + - + +
105F GLN* 3.4 3.6 - - - +
106F HIS* 3.1 21.8 + - - +
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Residues in contact with GLU 103 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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29C ILE* 3.6 23.0 - - - +
316E LEU* 3.7 23.3 - - + -
51F LYS* 2.8 49.5 + - + +
55F VAL* 4.9 7.0 - - + +
99F LEU* 2.9 41.3 + - + +
100F VAL 3.6 3.8 - - - +
102F LEU* 1.3 75.4 - - + +
104F ASN* 1.3 56.0 + - - +
106F HIS* 2.8 22.1 + - - +
107F THR* 2.8 17.9 + - - -
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Residues in contact with ASN 104 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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26E VAL* 3.5 18.6 - - + +
27E LYS 2.9 31.6 + - - +
28E THR* 3.8 5.8 - - - +
315E LYS 3.1 22.8 + - - -
316E LEU* 3.6 8.8 - - - +
317E ALA* 2.7 29.6 + - + +
100F VAL* 2.8 25.8 + - - +
101F ALA 3.7 0.7 - - - +
103F GLU* 1.3 71.4 - - - +
105F GLN* 1.3 63.8 + - - +
107F THR* 3.2 7.2 + - - -
108F ILE* 3.0 28.4 + - - +
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Residues in contact with GLN 105 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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106B HIS* 4.1 19.0 + - + +
28E THR* 3.1 30.7 + - - +
29E ILE* 3.2 36.9 - - + +
30E THR* 3.2 11.5 + - - -
101F ALA 3.0 17.0 + - - +
102F LEU 3.4 6.3 - - - +
104F ASN* 1.3 80.0 - - - +
106F HIS* 1.3 61.6 + - - +
108F ILE* 3.4 10.4 + - - +
109F ASP* 3.3 32.8 + - - +
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Residues in contact with HIS 106 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29C ILE* 3.8 19.6 - - + +
30C THR* 3.9 15.3 - - + -
2D LEU* 5.1 12.7 - - + +
105D GLN* 4.1 22.3 + - + +
109D ASP* 5.2 3.8 + - - -
51F LYS* 2.7 23.0 + - - +
102F LEU 3.1 9.1 + - - +
103F GLU* 2.8 11.1 + - - +
105F GLN* 1.3 82.3 - - - +
107F THR* 1.3 55.7 + - - +
109F ASP* 3.3 7.8 + - + +
110F LEU* 2.9 52.4 + - + +
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Residues in contact with THR 107 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316E LEU* 6.0 0.3 - - - +
317E ALA* 3.8 24.6 + - + +
319E GLY 3.8 21.5 - - - +
48F ILE* 4.0 27.4 - - + -
51F LYS* 2.9 29.5 + - - +
103F GLU 2.8 9.1 + - - -
104F ASN* 3.2 9.9 + - - -
106F HIS* 1.3 70.6 - - - +
108F ILE* 1.3 66.4 + - + +
110F LEU* 3.3 6.2 + - - +
111F THR* 2.9 26.2 + - + +
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Residues in contact with ILE 108 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26E VAL* 5.0 1.6 - - + -
28E THR* 3.9 11.7 - - + +
34E ILE* 3.8 39.0 - - + -
36E VAL* 4.3 20.6 - - + -
317E ALA* 5.6 0.7 - - + -
319E GLY 5.1 2.7 - - - +
320E MET* 5.4 0.7 - - - +
321E ARG* 4.0 27.6 - - + +
1F GLY* 5.0 13.2 - - - +
6F ILE* 5.5 0.3 - - - +
104F ASN 3.0 15.6 + - - +
105F GLN* 3.7 13.0 - - - +
107F THR* 1.3 76.7 - - - +
109F ASP* 1.3 65.9 + - - +
111F THR* 3.2 7.1 + - - -
112F GLY* 3.1 19.6 + - - -
----------------------------------------------------------
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Residues in contact with ASP 109 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106B HIS* 5.1 4.2 + - - -
2D LEU* 4.6 10.5 - - + -
1F GLY* 3.6 8.8 - - - -
2F LEU* 3.1 54.3 + - + +
3F PHE* 4.1 6.4 - - + -
105F GLN* 3.3 31.1 + - - +
106F HIS* 3.8 10.5 - - + +
107F THR 3.2 0.4 - - - -
108F ILE* 1.3 74.5 - - - +
110F LEU* 1.3 54.8 + - - +
112F GLY* 3.3 2.0 + - - -
113F SER* 2.7 36.1 + - - -
----------------------------------------------------------
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Residues in contact with LEU 110 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30C THR* 4.0 7.0 - - + -
2D LEU* 4.5 8.2 - - + +
44F ALA* 4.1 11.7 - - - +
47F GLN* 3.7 51.8 - - + +
48F ILE* 4.3 5.8 - - + -
51F LYS* 4.1 9.2 - - - +
106F HIS* 2.9 45.0 + - + +
107F THR* 3.6 5.4 - - - +
109F ASP* 1.3 74.8 - - - +
111F THR* 1.3 78.3 + - + +
113F SER* 3.1 17.2 + - - -
114F GLU* 3.1 17.2 + - - +
----------------------------------------------------------
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Residues in contact with THR 111 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319E GLY 4.4 0.7 - - - -
320E MET* 3.3 39.0 - - + +
321E ARG 4.5 0.2 + - - -
6F ILE* 3.9 4.4 - - - +
21F TRP* 4.2 6.7 - - + -
22F TYR* 2.9 32.6 + - - +
44F ALA* 4.6 0.7 - - + -
48F ILE* 3.9 27.8 - - + -
107F THR 2.9 17.4 + - - +
108F ILE* 3.2 7.3 + - - -
110F LEU* 1.3 80.2 - - + +
112F GLY* 1.4 63.1 + - - +
114F GLU* 3.2 2.4 + - - -
115F MET 3.1 13.2 + - - -
----------------------------------------------------------
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Residues in contact with GLY 112 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1F GLY* 6.4 1.6 - - - -
3F PHE* 4.4 9.4 - - - +
5F ALA* 4.4 2.9 - - - +
6F ILE* 3.7 21.0 - - - +
108F ILE 3.1 12.0 + - - -
109F ASP* 3.5 4.3 - - - -
111F THR* 1.4 80.5 + - - +
113F SER* 1.3 63.5 + - - +
115F MET* 3.3 4.0 + - - +
116F ASN* 3.2 22.3 + - - +
----------------------------------------------------------
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Residues in contact with SER 113 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2D LEU* 2.7 39.0 + - - +
3F PHE* 3.8 23.1 - - - -
109F ASP 2.7 17.5 + - - -
110F LEU* 3.2 11.0 - - - -
112F GLY* 1.3 72.9 - - - +
114F GLU* 1.3 53.2 + - - +
116F ASN* 3.0 5.2 + - - +
117F LYS* 2.8 48.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 114 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22F TYR* 3.5 29.8 - - + +
40F SER* 4.6 11.8 - - - +
43F ALA* 3.6 22.8 - - + +
44F ALA* 4.2 13.9 - - - +
47F GLN* 3.3 24.0 + - - +
110F LEU 3.1 12.2 + - - +
111F THR 3.2 1.1 + - - +
113F SER* 1.3 76.8 + - - +
115F MET* 1.3 63.6 + - - +
117F LYS* 2.7 36.7 + - - +
118F LEU* 3.0 22.9 + - - +
----------------------------------------------------------
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Residues in contact with MET 115 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15E LEU* 3.8 26.5 - - + -
16E GLY 3.6 30.7 - - - +
17E HIS* 3.9 8.3 - - - -
5F ALA* 3.7 11.4 - - + -
6F ILE* 4.0 19.3 - - + -
9F PHE* 5.7 0.2 - - + -
10F ILE* 3.6 33.9 - - + -
22F TYR* 3.8 17.8 - - + -
111F THR 3.1 9.0 + - - +
112F GLY 3.5 9.2 - - - +
113F SER 3.2 0.2 - - - -
114F GLU* 1.3 75.4 - - - +
116F ASN* 1.3 65.7 + - - +
118F LEU* 3.0 21.8 + - + +
119F PHE* 3.1 10.8 + - + +
----------------------------------------------------------
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Residues in contact with ASN 116 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124B ARG* 5.4 2.3 + - - -
2D LEU 5.8 1.0 + - - -
3F PHE* 4.2 32.1 - - + +
5F ALA* 4.1 11.7 - - + -
9F PHE* 4.0 19.8 - - - -
112F GLY 3.2 7.8 + - - +
113F SER* 3.0 7.9 + - - +
115F MET* 1.3 80.2 - - - +
117F LYS* 1.3 66.2 + - - +
119F PHE* 3.1 8.2 + - - +
120F GLU* 2.9 37.9 + - - +
----------------------------------------------------------
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Residues in contact with LYS 117 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1D GLY 3.1 26.3 + - - +
2D LEU 3.6 10.1 - - - +
3D PHE 4.5 4.7 - - - +
4D GLY* 3.9 21.1 - - - +
113F SER* 2.8 40.1 + - - +
114F GLU* 2.7 38.2 + - - +
116F ASN* 1.3 76.5 - - - +
118F LEU* 1.4 61.5 + - - +
120F GLU* 3.3 6.1 + - - +
121F LYS* 2.9 26.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU 118 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15E LEU* 3.7 16.4 - - + -
22F TYR* 3.7 28.7 - - + -
23F GLY* 4.2 6.3 - - - +
24F PHE* 3.6 28.5 - - + -
37F ASP* 3.7 27.4 - - + +
40F SER* 3.8 10.8 - - - +
114F GLU 3.0 13.4 + - - +
115F MET* 3.0 13.0 + - + +
117F LYS* 1.4 75.1 - - - +
119F PHE* 1.3 62.8 + - - +
121F LYS* 3.3 14.9 + - + +
122F THR* 2.9 29.8 + - - +
----------------------------------------------------------
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Residues in contact with PHE 119 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124B ARG* 4.1 7.9 - - - -
15E LEU* 3.8 25.5 - - + +
9F PHE* 3.7 24.2 - + + -
10F ILE* 5.0 0.2 - - + -
115F MET* 3.1 11.1 + - + +
116F ASN* 3.4 13.9 - - - +
118F LEU* 1.3 79.5 - - - +
120F GLU* 1.3 71.3 + - + +
122F THR* 3.0 5.5 + - - -
123F ARG* 2.8 30.5 + - + +
132F GLU* 3.4 41.1 - - + -
136F GLY* 3.6 32.1 - - - -
138F PHE* 3.4 28.7 - + - -
----------------------------------------------------------
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Residues in contact with GLU 120 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123B ARG* 5.8 0.9 + - - -
124B ARG* 5.1 4.9 + - - -
116F ASN* 2.9 36.4 + - - +
117F LYS* 3.7 6.1 - - - +
119F PHE* 1.3 80.4 - - + +
121F LYS* 1.3 57.7 + - - +
123F ARG* 2.6 55.2 + - - +
124F ARG* 2.9 50.5 + - - +
----------------------------------------------------------
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Residues in contact with LYS 121 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39F LYS* 4.9 21.2 - - - +
117F LYS 2.9 17.8 + - - +
118F LEU* 3.4 15.2 - - + +
119F PHE 3.1 0.2 - - - -
120F GLU* 1.3 74.7 - - - +
122F THR* 1.3 65.7 + - - +
124F ARG* 3.2 11.3 + - - +
125F GLN* 3.1 31.7 + - + +
155F GLY* 5.6 8.1 - - - -
----------------------------------------------------------
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Residues in contact with THR 122 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13E LEU* 4.0 22.4 - - + -
15E LEU* 4.1 8.7 - - + -
24F PHE* 3.6 20.2 - - + -
118F LEU* 2.9 19.0 + - - +
119F PHE 3.5 7.2 - - - -
121F LYS* 1.3 76.0 - - - +
123F ARG* 1.3 64.2 + - - +
125F GLN* 3.3 13.6 + - - +
126F LEU* 3.2 23.0 + - + +
138F PHE* 3.6 24.9 - - + -
152F ILE* 4.3 10.7 + - + +
----------------------------------------------------------
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Residues in contact with ARG 123 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123B ARG* 5.4 6.7 - - - +
120D GLU* 5.8 1.0 + - - -
123D ARG* 5.5 7.7 - - - +
132D GLU* 3.0 27.7 + - - +
119F PHE* 2.8 19.7 + - + +
120F GLU* 2.6 67.5 + - - +
122F THR* 1.3 74.7 - - - +
124F ARG* 1.3 83.1 + - - +
126F LEU* 3.2 15.7 + - - +
127F ARG* 3.6 8.7 + - - +
132F GLU* 5.4 4.9 - - + -
138F PHE* 3.5 26.6 - - + -
----------------------------------------------------------
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Residues in contact with ARG 124 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9D PHE* 3.7 38.8 - - - +
116D ASN* 5.4 2.4 + - - -
119D PHE* 4.2 10.7 - - - -
120D GLU* 5.2 4.0 + - - -
132D GLU* 2.8 46.6 + - + +
133D MET 5.6 1.0 - - - -
134D GLY* 4.0 23.4 + - - +
120F GLU* 2.9 39.1 + - - +
121F LYS* 3.2 8.4 + - - +
123F ARG* 1.3 99.4 - - - +
125F GLN* 1.3 64.1 + - - +
127F ARG* 3.3 22.5 + - - +
----------------------------------------------------------
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Residues in contact with GLN 125 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121F LYS* 3.1 18.2 + - + +
122F THR* 3.4 15.7 + - - +
123F ARG 3.2 0.2 - - - -
124F ARG* 1.3 78.6 - - - +
126F LEU* 1.3 59.4 + - - +
127F ARG* 3.1 6.1 + - - +
152F ILE* 2.8 37.9 + - + +
155F GLY* 3.1 32.9 - - - +
157F TYR* 3.6 40.3 + - + +
159F HIS* 3.9 8.8 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il