Contacts of the helix formed by residues 889 - 942 (chain A) in PDB entry 5I4E
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 889 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
867A TYR* 4.7 10.8 - - - +
885A PRO* 4.2 27.1 - - + +
887A GLY* 3.5 3.4 - - - +
888A LEU* 1.4 78.1 - - - +
890A PRO* 1.4 67.4 - - - +
891A ASN* 4.1 6.6 + - - +
892A GLU* 3.0 30.5 + - - +
893A ILE* 2.9 26.6 + - - +
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Residues in contact with PRO 890 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
808A TYR* 3.5 16.7 - - - +
860A VAL* 5.8 0.2 - - - +
863A LEU 5.4 0.2 - - - -
864A GLU* 3.7 44.7 - - + +
867A TYR* 3.4 43.7 - - + -
868A ASN* 4.9 2.7 - - - +
889A THR* 1.4 82.4 - - - +
891A ASN* 1.4 63.4 + - - +
893A ILE* 3.4 14.5 + - + +
894A ASP* 3.1 25.8 + - - +
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Residues in contact with ASN 891 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
864A GLU* 5.6 2.9 - - - +
889A THR* 3.2 6.0 + - - +
890A PRO* 1.4 84.8 - - + +
892A GLU* 1.4 60.1 + - + +
894A ASP* 3.4 8.9 - - - +
895A SER* 3.2 26.5 + - - -
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Residues in contact with GLU 892 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
887A GLY* 4.2 20.9 - - - +
889A THR* 3.0 22.6 + - - +
891A ASN* 1.4 76.2 - - + +
893A ILE* 1.4 62.7 + - - +
894A ASP 3.3 0.7 - - - -
895A SER* 3.8 17.5 + - - +
896A THR* 3.0 38.7 + - + +
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Residues in contact with ILE 893 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
808A TYR* 4.8 3.1 - - - +
812A ALA* 4.4 15.0 - - + +
815A LEU* 3.9 23.3 - - + -
816A VAL* 3.7 29.2 - - + -
819A ILE* 4.8 3.5 - - + +
860A VAL* 3.9 28.9 - - + +
863A LEU* 6.1 3.8 - - + -
887A GLY 4.4 2.2 - - - +
888A LEU* 4.1 21.5 - - - +
889A THR 2.9 21.0 + - - +
890A PRO* 3.4 12.6 - - + +
891A ASN 3.3 0.2 - - - -
892A GLU* 1.4 75.7 - - - +
894A ASP* 1.3 56.9 + - - +
896A THR* 3.2 6.1 + - - -
897A TRP* 3.1 29.5 + - + +
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Residues in contact with ASP 894 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
860A VAL* 5.2 6.5 - - + +
864A GLU* 5.0 8.2 - - - +
890A PRO 3.1 13.0 + - - +
891A ASN* 3.4 13.2 - - - +
893A ILE* 1.3 77.4 - - - +
895A SER* 1.4 58.7 + - - +
897A TRP* 3.3 12.0 + - - +
898A SER* 2.9 41.5 + - - -
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Residues in contact with SER 895 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
891A ASN 3.2 16.3 + - - -
892A GLU* 3.5 24.3 + - - -
893A ILE 3.5 0.4 - - - -
894A ASP* 1.4 78.7 + - - +
896A THR* 1.3 60.3 + - - +
898A SER* 4.0 7.4 - - - -
899A ALA* 3.6 17.5 + - - +
902A LYS* 5.9 0.3 + - - -
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Residues in contact with THR 896 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
816A VAL* 4.9 7.8 - - + +
819A ILE* 3.4 24.6 - - - +
820A ASN* 5.1 9.0 - - - +
823A GLN* 4.3 2.8 - - - +
887A GLY 6.1 0.9 - - - +
892A GLU* 3.0 26.0 + - - +
893A ILE* 3.2 11.3 + - - -
895A SER* 1.3 76.5 - - - +
897A TRP* 1.4 59.3 + - - +
898A SER 3.4 0.4 - - - -
899A ALA* 3.5 8.7 + - + +
900A LEU* 3.1 22.9 + - - +
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Residues in contact with TRP 897 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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818A TRP* 5.5 0.2 - - - -
819A ILE* 4.1 16.7 - - + +
853A LYS* 3.9 24.0 - - + +
856A LYS* 5.0 4.6 - - - +
857A GLY* 3.9 28.1 - - - +
860A VAL* 3.9 32.0 - - + +
893A ILE 3.1 19.6 + - - +
894A ASP* 3.7 12.1 - - - +
896A THR* 1.4 75.9 + - - +
898A SER* 1.4 62.5 + - - +
899A ALA 3.3 0.2 - - - -
900A LEU* 3.3 27.9 + - + +
901A GLU* 3.1 55.7 + - - +
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Residues in contact with SER 898 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
894A ASP* 2.9 28.0 + - - -
895A SER* 4.1 8.7 - - - -
897A TRP* 1.4 78.7 - - - +
899A ALA* 1.3 58.5 + - - +
901A GLU* 3.5 11.2 + - - +
902A LYS* 3.0 45.1 + - - +
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Residues in contact with ALA 899 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
823A GLN* 3.1 26.5 + - - +
895A SER 3.6 13.4 + - - +
896A THR* 3.5 13.0 + - - +
897A TRP 3.3 0.4 - - - -
898A SER* 1.3 76.6 - - - +
900A LEU* 1.4 58.0 + - - +
902A LYS* 3.8 14.2 - - - +
903A ALA 3.2 18.9 + - - -
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Residues in contact with LEU 900 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
818A TRP* 4.3 10.8 - - + -
819A ILE* 3.4 38.8 - - + +
822A LYS* 4.3 3.6 - - + -
823A GLN* 3.4 23.1 + - - +
826A LEU* 4.0 12.6 - - + -
848A TYR* 4.1 7.4 - - - +
853A LYS* 5.5 4.3 - - + -
896A THR 3.1 13.6 + - - +
897A TRP* 3.3 38.3 + - + +
899A ALA* 1.4 77.6 - - - +
901A GLU* 1.4 57.1 + - - +
903A ALA* 3.3 5.2 + - - +
904A GLU* 3.0 43.3 + - - +
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Residues in contact with GLU 901 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
849A LYS* 5.0 2.3 + - - -
853A LYS* 3.0 22.7 + - - +
897A TRP* 3.1 52.8 + - + +
898A SER* 3.9 9.2 + - - +
900A LEU* 1.4 76.2 - - + +
902A LYS* 1.4 55.7 + - - +
903A ALA 3.2 0.4 - - - -
904A GLU* 3.1 22.6 + - - +
905A GLN* 3.1 43.6 + - - +
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Residues in contact with LYS 902 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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895A SER 5.9 0.2 + - - -
898A SER* 3.0 35.1 + - - +
899A ALA* 3.8 13.4 - - - +
901A GLU* 1.4 74.8 - - - +
903A ALA* 1.3 58.5 + - - +
905A GLN* 4.2 13.5 - - - +
906A GLU* 3.3 42.5 + - - +
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Residues in contact with ALA 903 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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823A GLN* 3.8 23.1 - - + +
826A LEU* 3.8 24.1 - - + +
827A GLU* 5.5 5.8 - - + +
829A ARG* 5.1 0.7 + - - -
899A ALA 3.2 14.8 + - - +
900A LEU 3.4 9.2 - - - +
901A GLU 3.2 0.4 - - - -
902A LYS* 1.3 75.9 - - - +
904A GLU* 1.4 60.1 + - - +
906A GLU* 3.8 8.1 + - - +
907A HIS* 3.1 28.4 + - - +
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Residues in contact with GLU 904 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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826A LEU* 3.8 23.3 - - + -
845A HIS* 3.6 20.9 + - + +
848A TYR* 3.0 31.9 + - + -
849A LYS* 5.3 4.9 - - + +
853A LYS* 2.6 42.7 + - - +
900A LEU* 3.0 21.5 + - - +
901A GLU* 3.1 19.0 + - - +
903A ALA* 1.4 76.0 - - - +
905A GLN* 1.3 62.8 + - + +
907A HIS* 3.3 2.4 + - - +
908A ALA* 3.2 21.7 + - - +
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Residues in contact with GLN 905 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
901A GLU* 3.1 33.5 + - - +
902A LYS* 4.3 12.8 - - - +
904A GLU* 1.3 76.2 - - + +
906A GLU* 1.3 57.2 + - + +
907A HIS 3.2 0.4 - - - -
908A ALA* 3.6 5.2 + - - +
909A GLU* 3.1 35.5 + - - +
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Residues in contact with GLU 906 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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829A ARG* 3.1 23.5 + - - +
902A LYS* 3.3 31.1 + - - +
903A ALA* 4.2 6.3 - - - +
904A GLU 3.4 0.6 - - - -
905A GLN* 1.3 75.7 - - + +
907A HIS* 1.3 58.1 + - - +
909A GLU* 4.3 8.0 - - - +
910A ALA* 3.4 16.5 + - - +
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Residues in contact with HIS 907 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
825A SER 4.2 8.3 - - - -
826A LEU* 2.8 43.1 + - + +
828A SER* 5.7 2.2 - - - -
829A ARG* 3.7 5.8 + - - +
831A PHE* 4.1 26.1 - + - -
841A PHE* 4.7 15.5 + + - -
845A HIS* 3.4 32.9 - + - +
903A ALA 3.1 18.3 + - - +
904A GLU 3.6 4.5 - - - +
905A GLN 3.2 0.4 - - - -
906A GLU* 1.3 77.8 - - - +
908A ALA* 1.4 59.2 + - - +
909A GLU 3.4 0.4 - - - -
910A ALA* 3.4 4.5 + - - +
911A LEU* 3.1 41.5 + - + +
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Residues in contact with ALA 908 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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842A MET* 5.8 1.0 - - - +
845A HIS* 4.2 16.4 - - + +
846A LYS* 4.6 13.5 - - - +
904A GLU 3.2 13.3 + - - +
905A GLN* 4.0 5.2 - - - +
907A HIS* 1.4 76.6 - - - +
909A GLU* 1.3 60.0 + - - +
910A ALA 3.4 0.2 - - - -
911A LEU* 3.3 15.4 - - + +
912A ARG* 3.2 33.3 + - - +
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Residues in contact with GLU 909 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
905A GLN* 3.1 22.5 + - - +
906A GLU* 4.6 5.8 - - - -
908A ALA* 1.3 70.8 - - - +
910A ALA* 1.4 57.9 + - - +
911A LEU 3.1 4.3 - - - -
912A ARG* 3.1 14.1 + - + +
913A ILE* 3.0 42.3 + - + +
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Residues in contact with ALA 910 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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829A ARG* 4.2 23.6 - - - +
831A PHE* 4.6 10.4 - - + -
906A GLU 3.4 20.2 + - - +
907A HIS 3.4 5.8 + - - +
909A GLU* 1.4 76.3 - - - +
911A LEU* 1.4 56.2 + - - +
912A ARG 3.5 0.2 - - - -
913A ILE* 4.0 13.1 - - - +
914A GLU* 3.1 26.3 + - - +
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Residues in contact with LEU 911 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
831A PHE* 3.5 27.6 - - + -
838A VAL* 3.4 37.3 - - + +
841A PHE* 3.7 28.7 - - + +
842A MET* 3.8 26.1 - - + +
845A HIS* 4.7 4.5 - - + -
846A LYS* 5.7 1.6 - - - +
907A HIS* 3.1 30.9 + - + +
908A ALA* 3.3 15.9 - - - +
909A GLU 3.1 0.2 - - - -
910A ALA* 1.4 76.9 - - - +
912A ARG* 1.4 58.9 + - - +
914A GLU* 3.8 4.4 - - - +
915A LEU* 3.0 27.4 + - - +
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Residues in contact with ARG 912 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
842A MET* 5.0 22.1 - - + +
846A LYS* 5.5 8.7 - - - +
908A ALA* 3.2 18.3 + - - +
909A GLU* 3.1 14.8 + - + +
911A LEU* 1.4 73.2 - - - +
913A ILE* 1.3 66.6 + - + +
915A LEU* 3.4 9.1 + - + +
916A LYS* 3.1 25.9 + - - +
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Residues in contact with ILE 913 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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909A GLU* 3.0 32.6 + - + +
910A ALA* 4.1 9.9 - - + +
912A ARG* 1.3 77.0 - - + +
914A GLU* 1.3 64.5 + - - +
916A LYS* 3.4 11.3 + - + +
917A ARG* 3.2 23.2 + - + +
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Residues in contact with GLU 914 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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831A PHE* 4.4 22.7 - - + +
833A ASP* 5.1 4.5 + - - +
838A VAL* 3.4 27.4 - - + +
910A ALA 3.1 20.9 + - - +
911A LEU* 3.8 7.4 - - - +
913A ILE* 1.3 78.9 - - - +
915A LEU* 1.3 56.4 + - - +
917A ARG* 3.4 15.9 + - - +
918A GLN* 2.8 62.7 + - - +
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Residues in contact with LEU 915 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
835A ILE* 4.4 13.7 - - + -
838A VAL* 3.8 21.0 - - + +
839A GLN* 4.5 15.3 - - + -
842A MET* 4.3 20.0 - - + -
911A LEU 3.0 19.3 + - - +
912A ARG* 3.8 9.9 - - + +
913A ILE 3.3 0.4 - - - -
914A GLU* 1.3 76.6 - - - +
916A LYS* 1.3 59.7 + - - +
918A GLN* 4.1 2.4 - - + +
919A LYS* 3.2 55.6 + - + +
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Residues in contact with LYS 916 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
912A ARG 3.1 13.8 + - - +
913A ILE* 3.4 14.4 - - + +
914A GLU 3.3 0.2 - - - -
915A LEU* 1.3 75.6 - - - +
917A ARG* 1.3 58.8 + - - +
919A LYS* 3.4 4.0 + - - +
920A LYS* 2.9 53.1 + - - +
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Residues in contact with ARG 917 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
833A ASP* 3.8 6.3 + - - -
913A ILE* 3.2 15.9 + - + +
914A GLU* 3.4 15.8 + - - +
916A LYS* 1.3 78.5 - - - +
918A GLN* 1.3 87.7 + - - +
920A LYS* 3.3 10.5 + - - +
921A ILE* 3.1 31.3 + - + +
989A GLN* 3.4 20.7 + - + +
990A LEU* 2.7 67.4 - - - +
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Residues in contact with GLN 918 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
833A ASP* 3.1 37.8 + - - +
834A SER 3.6 4.6 + - - +
835A ILE* 3.4 29.0 + - + +
838A VAL* 3.7 17.0 - - + -
914A GLU* 2.8 44.8 + - - +
915A LEU* 4.1 5.6 - - - +
917A ARG* 1.3 106.8 - - - +
919A LYS* 1.4 57.4 + - - +
921A ILE* 3.6 13.1 + - - +
922A ALA 3.3 18.2 + - - -
990A LEU* 5.3 0.6 - - - +
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Residues in contact with LYS 919 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
835A ILE* 3.9 39.9 - - + -
839A GLN* 4.8 10.1 - - - +
915A LEU* 3.2 39.9 + - + +
916A LYS* 3.9 4.3 - - - +
918A GLN* 1.4 72.1 - - - +
920A LYS* 1.4 63.0 + - - +
921A ILE 3.3 1.3 - - - -
922A ALA* 3.7 3.4 + - - +
923A VAL* 3.3 29.3 + - - +
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Residues in contact with LYS 920 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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916A LYS* 2.9 41.2 + - - +
917A ARG* 3.3 9.4 + - - +
919A LYS* 1.4 76.1 - - - +
921A ILE* 1.3 60.7 + - - +
923A VAL* 3.9 5.8 + - - +
924A LEU* 3.1 31.8 + - + +
989A GLN* 4.0 24.8 - - - +
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Residues in contact with ILE 921 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
917A ARG* 3.1 53.6 + - + +
918A GLN* 3.8 13.7 - - - +
919A LYS 3.3 0.2 - - - -
920A LYS* 1.3 75.4 - - - +
922A ALA* 1.4 59.1 + - - +
923A VAL 3.3 0.2 - - - -
924A LEU* 3.3 8.3 + - + +
925A LEU* 2.9 54.7 + - + +
986A ILE* 5.6 7.9 - - + +
989A GLN* 3.4 20.2 - - + +
990A LEU* 3.8 20.4 - - + +
992A GLU* 4.9 14.6 - - - +
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Residues in contact with ALA 922 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
835A ILE* 3.5 31.2 - - + -
918A GLN 3.3 6.6 + - - +
919A LYS* 4.0 5.8 - - - +
920A LYS 3.6 0.2 - - - -
921A ILE* 1.4 76.2 - - - +
923A VAL* 1.4 57.2 + - + +
925A LEU* 3.5 11.2 + - - +
926A GLN* 3.1 31.3 + - - +
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Residues in contact with VAL 923 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
919A LYS* 3.3 17.0 + - + +
920A LYS* 4.1 7.0 - - - +
921A ILE 3.3 0.6 - - - -
922A ALA* 1.4 75.7 - - + +
924A LEU* 1.3 61.6 + - + +
926A GLN* 3.3 22.2 - - - +
927A LYS* 3.1 54.0 + - + +
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Residues in contact with LEU 924 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
920A LYS* 3.1 23.5 + - + +
921A ILE* 3.3 6.2 + - - +
923A VAL* 1.3 80.8 - - + +
925A LEU* 1.3 58.9 + - - +
927A LYS* 3.9 10.4 - - + +
928A TYR* 3.2 26.0 + - - +
982A ASP* 4.0 25.4 - - - +
985A SER* 3.8 28.7 - - - +
986A ILE* 3.7 33.9 - - + +
989A GLN* 4.0 19.5 - - - +
----------------------------------------------------------
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Residues in contact with LEU 925 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
921A ILE* 2.9 44.3 + - + +
922A ALA* 3.8 9.6 - - - +
923A VAL 3.2 0.2 - - - -
924A LEU* 1.3 78.0 - - - +
926A GLN* 1.4 58.1 + - - +
928A TYR* 3.3 4.4 + - + +
929A ASN* 2.9 43.6 + - - +
986A ILE* 4.7 14.4 - - + -
992A GLU* 5.3 12.8 - - + +
995A TYR* 4.2 27.1 - - + -
----------------------------------------------------------
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Residues in contact with GLN 926 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
922A ALA 3.1 18.5 + - - +
923A VAL* 3.3 31.0 + - - +
925A LEU* 1.4 72.0 - - - +
927A LYS* 1.4 60.4 + - + +
929A ASN* 4.5 4.8 - - - +
930A ARG* 3.1 30.8 + - - +
----------------------------------------------------------
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Residues in contact with LYS 927 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
923A VAL* 3.1 41.8 + - + +
924A LEU* 3.9 11.1 - - + +
926A GLN* 1.4 76.4 - - + +
928A TYR* 1.3 60.9 + - - +
930A ARG* 4.1 23.4 + - - +
931A ILE* 3.2 32.0 + - + +
982A ASP* 4.0 20.9 - - - +
----------------------------------------------------------
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Residues in contact with TYR 928 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
924A LEU 3.2 17.5 + - - +
925A LEU* 3.5 7.0 - - + +
927A LYS* 1.3 79.3 - - - +
929A ASN* 1.3 73.7 + - - +
931A ILE* 3.3 4.1 + - - +
932A LEU* 2.9 66.0 + - + +
979A SER* 4.4 12.1 - - - -
982A ASP* 4.4 15.0 - - + +
983A LEU* 4.0 32.8 - - + -
986A ILE* 5.6 2.5 - - + -
995A TYR* 3.4 41.6 - + + +
998A VAL* 4.1 0.2 - - - +
999A PRO* 2.9 37.2 - - + +
----------------------------------------------------------
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Residues in contact with ASN 929 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
925A LEU* 2.9 39.1 + - - +
926A GLN* 4.5 4.7 - - - +
928A TYR* 1.3 83.0 - - - +
930A ARG* 1.4 58.8 + - - +
932A LEU* 3.9 6.3 - - - +
933A LYS* 2.9 31.7 + - - +
995A TYR* 3.9 23.2 + - - -
----------------------------------------------------------
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Residues in contact with ARG 930 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
926A GLN 3.1 21.6 + - - +
927A LYS* 4.1 26.5 + - - +
929A ASN* 1.4 71.8 - - - +
931A ILE* 1.3 83.8 + - - +
933A LYS* 3.2 8.0 + - - +
934A LYS* 3.1 64.4 + - + +
978A GLN* 4.6 11.3 + - - -
----------------------------------------------------------
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Residues in contact with ILE 931 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
927A LYS* 3.2 17.4 + - + +
928A TYR* 3.3 9.3 + - - +
930A ARG* 1.3 100.4 - - - +
932A LEU* 1.3 66.2 + - + +
934A LYS* 3.6 3.6 + - - +
935A LEU* 2.3 54.0 + - + +
975A LEU* 3.9 15.9 - - + -
978A GLN* 3.7 42.0 - - + +
979A SER* 4.2 11.7 - - - +
982A ASP* 4.0 11.9 - - - +
----------------------------------------------------------
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Residues in contact with LEU 932 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
928A TYR* 2.9 69.9 + - + +
929A ASN* 3.9 7.9 - - - +
930A ARG 3.4 0.2 - - - -
931A ILE* 1.3 84.9 - - + +
933A LYS* 1.3 60.8 + - - +
935A LEU* 3.2 13.5 + - + +
936A GLU* 2.8 34.0 + - - +
979A SER* 4.2 7.9 - - - +
995A TYR* 5.9 0.2 - - + -
998A VAL* 4.1 19.5 - - + -
999A PRO* 4.6 10.1 - - + -
1002A THR* 5.3 10.1 - - + +
----------------------------------------------------------
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Residues in contact with LYS 933 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
929A ASN 2.9 19.8 + - - +
930A ARG* 3.2 8.7 + - - +
932A LEU* 1.3 77.8 - - - +
934A LYS* 1.4 51.6 + - + +
936A GLU* 3.2 11.7 + - + +
937A ASN* 2.8 35.1 + - + +
----------------------------------------------------------
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Residues in contact with LYS 934 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
930A ARG* 3.1 57.9 + - + +
931A ILE* 3.9 6.1 - - - +
933A LYS* 1.4 75.4 - - + +
935A LEU* 1.3 56.2 + - + +
937A ASN* 3.4 8.6 + - - +
938A TRP* 2.8 36.2 + - - +
971A GLU* 5.6 1.1 - - - -
975A LEU* 6.3 0.4 - - + -
----------------------------------------------------------
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Residues in contact with LEU 935 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
931A ILE* 2.3 40.2 - - + +
932A LEU* 3.2 16.4 + - + +
934A LYS* 1.3 76.0 - - + +
936A GLU* 1.3 65.2 + - - +
938A TRP* 4.4 6.4 - - - +
939A ALA* 3.2 27.0 + - - +
971A GLU* 4.8 5.2 - - - +
975A LEU* 3.5 52.7 - - + -
979A SER* 6.0 0.7 - - - +
1002A THR* 4.8 19.6 - - + +
----------------------------------------------------------
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Residues in contact with GLU 936 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
932A LEU* 2.8 20.8 + - - +
933A LYS* 3.5 9.9 - - + +
935A LEU* 1.3 74.9 - - - +
937A ASN* 1.4 54.4 + - - +
939A ALA* 4.1 2.0 - - - +
940A THR* 2.7 45.6 + - + +
1002A THR* 5.2 12.9 - - + +
----------------------------------------------------------
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Residues in contact with ASN 937 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
933A LYS* 2.8 17.5 + - + +
934A LYS* 3.6 9.7 + - - +
936A GLU* 1.4 73.4 - - - +
938A TRP* 1.4 57.5 + - - +
940A THR* 3.1 7.5 + - - -
941A THR* 2.8 56.0 + - - +
----------------------------------------------------------
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Residues in contact with TRP 938 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
934A LYS 2.8 21.9 + - - +
935A LEU* 4.4 4.7 - - - +
937A ASN* 1.4 76.4 - - - +
939A ALA* 1.3 68.5 + - + +
941A THR* 2.8 21.9 + - - -
942A LYS* 3.1 28.2 + - + +
965A LEU* 5.5 3.4 - - + -
968A PHE* 3.6 36.1 - + + -
971A GLU* 3.7 33.8 + - - +
972A CYS* 6.4 0.7 - - - -
1006A ASP* 4.7 14.4 - - - -
1009A PHE* 6.6 0.2 - - + -
1013A TRP* 3.9 22.9 - + - -
----------------------------------------------------------
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Residues in contact with ALA 939 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
935A LEU 3.2 18.0 + - - +
936A GLU* 4.2 3.4 - - - +
938A TRP* 1.3 91.9 - - + +
940A THR* 1.3 57.8 + - + +
942A LYS* 3.3 16.0 - - - +
943A SER* 4.1 2.6 + - - -
945A TYR* 6.0 0.2 - - - -
1002A THR* 6.4 1.6 - - + -
1005A LYS 6.1 0.2 - - - -
1006A ASP* 5.0 10.3 - - - +
1009A PHE* 2.9 45.7 - - + -
----------------------------------------------------------
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Residues in contact with THR 940 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
936A GLU* 2.7 31.4 + - + +
937A ASN* 3.1 9.5 + - - -
939A ALA* 1.3 76.4 - - + +
941A THR* 1.4 57.6 + - - +
942A LYS 3.1 2.0 - - - -
943A SER* 2.8 32.8 + - - +
1009A PHE* 4.6 13.7 - - + -
----------------------------------------------------------
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Residues in contact with THR 941 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
937A ASN* 2.8 38.9 + - - +
938A TRP* 2.8 25.5 + - - -
940A THR* 1.4 72.4 - - - +
942A LYS* 1.4 59.2 + - - +
943A SER* 3.1 7.3 + - - -
944A VAL* 3.6 23.0 + - - +
----------------------------------------------------------
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Residues in contact with LYS 942 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
938A TRP* 3.1 25.4 + - + +
939A ALA* 3.3 20.2 - - - +
941A THR* 1.4 72.7 - - - +
943A SER* 1.4 52.7 + - - +
944A VAL* 3.1 10.7 + - - -
945A TYR* 2.9 40.2 + - + +
962A LEU* 5.9 2.6 - - - +
965A LEU* 2.8 36.9 - - + +
1009A PHE* 5.1 15.3 - - + +
1012A GLN* 5.8 2.9 - - + -
1013A TRP* 3.4 39.7 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il