Contacts of the helix formed by residues 43 - 98 (chain B) in PDB entry 5IJH
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 43 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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39B VAL* 3.8 4.7 - - - -
42B THR* 1.3 77.9 - - - +
44B GLU* 1.3 63.3 + - - +
45B ASP* 3.1 15.7 + - + +
46B THR* 2.8 58.8 + - - +
47B VAL* 3.4 12.8 - - - +
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Residues in contact with GLU 44 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39B VAL* 3.6 25.9 - - + +
43B ASP* 1.3 73.5 - - - +
45B ASP* 1.4 56.3 + - - +
47B VAL* 3.7 5.6 + - + +
48B LYS* 3.2 40.7 + - + +
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Residues in contact with ASP 45 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43B ASP* 3.1 11.0 + - - +
44B GLU* 1.4 76.0 - - - +
46B THR* 1.4 56.1 + - - +
48B LYS* 3.3 23.2 + - - +
49B ARG* 2.8 35.2 + - - +
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Residues in contact with THR 46 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37B PRO* 4.5 6.0 - - - +
42B THR* 3.2 23.6 + - + -
43B ASP* 2.8 43.7 + - - +
45B ASP* 1.4 69.5 - - + +
47B VAL* 1.4 54.2 + - - +
49B ARG* 3.5 11.3 + - - +
50B TYR* 2.9 34.2 + - - +
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Residues in contact with VAL 47 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37B PRO* 3.7 28.9 - - + +
39B VAL* 4.0 22.7 - - + +
42B THR* 3.8 13.2 - - - +
43B ASP 3.4 15.9 + - - +
44B GLU* 3.8 9.9 - - + +
45B ASP 3.3 0.4 - - - -
46B THR* 1.4 73.0 + - - +
48B LYS* 1.4 63.3 + - - +
50B TYR* 3.2 2.4 + - - +
51B PHE* 3.0 53.2 + - + -
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Residues in contact with LYS 48 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44B GLU* 3.2 33.5 + - + +
45B ASP* 3.3 28.4 + - - +
47B VAL* 1.4 75.8 - - - +
49B ARG* 1.4 51.5 + - - +
51B PHE* 3.4 4.3 + - - +
52B ALA* 2.9 35.1 + - - +
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Residues in contact with ARG 49 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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45B ASP* 2.8 23.4 + - - +
46B THR* 3.7 12.1 - - - +
48B LYS* 1.4 68.9 - - - +
50B TYR* 1.4 61.3 + - - +
52B ALA* 3.5 6.9 + - + +
53B LYS* 3.0 66.3 + - - +
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Residues in contact with TYR 50 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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32B ALA* 2.9 38.1 + - - -
35B GLN* 3.3 40.4 + - + +
36B ALA* 3.8 6.7 - - - -
37B PRO* 3.5 25.1 - - + -
46B THR 2.9 17.9 + - - +
47B VAL 3.2 3.8 + - - +
49B ARG* 1.4 78.2 - - - +
51B PHE* 1.4 77.8 + + - +
53B LYS* 3.3 12.8 + - + +
54B PHE* 3.0 31.1 + - + +
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Residues in contact with PHE 51 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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32B ALA* 4.4 9.2 - - + -
33B GLN* 5.8 1.6 - - + -
36B ALA* 3.8 24.9 - - + -
37B PRO* 4.7 3.6 - - + -
47B VAL* 3.0 49.4 + - + +
48B LYS* 4.0 4.0 - - - +
50B TYR* 1.4 91.1 - + - +
52B ALA* 1.4 55.5 + - - +
54B PHE* 3.3 7.3 + + + +
55B GLU* 2.8 42.8 + - + +
167B LEU* 3.8 34.5 - - + -
171B ARG* 5.9 4.0 - - - +
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Residues in contact with ALA 52 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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48B LYS 2.9 19.0 + - - +
49B ARG* 3.6 10.1 - - + +
50B TYR 3.3 0.2 - - - -
51B PHE* 1.4 74.9 - - - +
53B LYS* 1.4 60.6 + - - +
55B GLU* 3.2 10.0 + - - +
56B GLU* 3.1 29.4 + - + +
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Residues in contact with LYS 53 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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49B ARG* 3.0 43.0 + - - +
50B TYR* 3.4 14.1 - - + +
52B ALA* 1.4 71.3 - - - +
54B PHE* 1.4 64.2 + - - +
56B GLU* 3.4 10.4 + - - +
57B LYS* 3.2 20.8 + - - +
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Residues in contact with PHE 54 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28B MET* 3.5 38.1 - - + -
29B LEU* 3.8 17.5 - - + -
32B ALA* 3.6 28.7 - - + -
50B TYR* 3.0 23.3 + - + +
51B PHE* 3.7 10.1 - + + +
53B LYS* 1.4 75.0 - - - +
55B GLU* 1.4 54.1 + - - +
57B LYS* 3.2 12.2 + - + +
58B PHE* 2.8 63.7 + + + +
167B LEU* 3.7 33.4 - - + -
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Residues in contact with GLU 55 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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51B PHE* 2.8 25.9 + - + +
52B ALA* 3.2 8.7 + - - +
54B PHE* 1.4 74.0 - - - +
56B GLU* 1.3 63.4 + - + +
58B PHE* 4.2 1.3 - - - +
59B PHE* 3.0 43.8 + - + +
163B HIS* 2.7 39.7 + - - -
167B LEU* 3.3 15.9 - - + +
171B ARG* 2.8 45.4 + - - +
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Residues in contact with GLU 56 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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52B ALA* 3.1 17.4 + - + +
53B LYS* 3.6 9.2 - - - +
54B PHE 3.3 0.4 - - - -
55B GLU* 1.3 76.7 - - + +
57B LYS* 1.3 57.7 + - - +
59B PHE* 3.8 1.8 - - - +
60B GLN* 2.9 50.4 + - - +
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Residues in contact with LYS 57 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28B MET* 4.1 40.1 - - + +
53B LYS 3.2 9.4 + - - +
54B PHE* 3.2 16.7 + - + +
56B GLU* 1.3 76.9 - - - +
58B PHE* 1.3 57.8 + - - +
60B GLN* 3.3 12.6 + - + +
61B THR* 2.8 35.8 + - - +
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Residues in contact with PHE 58 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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25B PHE* 3.7 26.5 - + - -
28B MET* 4.3 13.0 - - + -
29B LEU* 3.9 21.8 - - + -
54B PHE* 2.8 47.1 + + + +
55B GLU* 3.8 5.6 - - - +
57B LYS* 1.3 72.0 - - - +
59B PHE* 1.4 71.0 + + - +
61B THR* 3.2 5.7 + - - -
62B CYS* 3.0 48.7 + - - -
159B ILE* 4.3 11.4 - - + -
160B LEU* 4.0 11.9 - - + -
163B HIS* 3.5 38.1 - + + -
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Residues in contact with PHE 59 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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55B GLU* 3.0 56.1 + - + +
56B GLU* 4.4 1.6 - - - +
58B PHE* 1.4 80.2 - + - +
60B GLN* 1.4 60.1 + - - +
62B CYS* 3.4 6.2 + - - +
63B GLU* 3.0 37.8 + - - +
160B LEU* 3.9 16.6 - - + -
163B HIS* 3.8 13.7 - + - -
171B ARG* 3.8 12.6 - - + -
172B GLY* 3.7 22.9 - - - -
175B TRP* 3.5 50.2 - + + +
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Residues in contact with GLN 60 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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56B GLU* 2.9 37.4 + - - +
57B LYS* 3.6 9.1 - - - +
59B PHE* 1.4 75.8 - - - +
61B THR* 1.4 58.1 + - - +
63B GLU* 3.4 15.7 + - - +
64B LYS* 2.9 29.2 + - - +
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Residues in contact with THR 61 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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21B GLN* 6.6 0.2 - - + -
24B ALA* 6.6 0.4 - - + -
25B PHE* 3.6 22.2 - - + -
28B MET* 3.6 29.0 - - + +
57B LYS* 2.8 19.7 + - - +
58B PHE 3.4 8.3 - - - -
60B GLN* 1.4 73.4 - - - +
62B CYS* 1.3 57.5 + - - +
64B LYS* 3.4 16.1 + - + +
65B GLU* 2.9 36.7 + - + +
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Residues in contact with CYS 62 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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25B PHE* 3.8 18.8 - - - -
58B PHE* 3.0 43.9 + - - +
59B PHE* 3.4 14.4 - - - +
60B GLN 3.3 0.2 - - - -
61B THR* 1.3 74.2 - - - +
63B GLU* 1.3 51.4 + - - +
65B GLU* 3.2 3.1 + - - +
66B LEU* 2.8 36.2 + - - +
156B PHE* 3.9 7.9 - - - -
159B ILE* 5.4 1.3 - - - -
160B LEU* 4.0 16.8 - - - -
175B TRP* 3.6 25.1 - - + -
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Residues in contact with GLU 63 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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59B PHE* 3.0 26.5 + - - +
60B GLN* 3.6 15.8 - - - +
61B THR 3.4 0.2 - - - -
62B CYS* 1.3 73.0 - - - +
64B LYS* 1.3 57.4 + - - +
66B LEU* 3.4 4.1 + - + +
67B ALA* 2.9 31.6 + - - +
175B TRP* 3.6 27.9 + - + -
179B HIS* 5.4 7.2 + - + +
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Residues in contact with LYS 64 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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60B GLN 2.9 17.4 + - - +
61B THR* 3.6 16.6 - - + +
62B CYS 3.3 0.2 - - - -
63B GLU* 1.3 75.5 - - - +
65B GLU* 1.4 67.8 + - - +
67B ALA* 3.4 7.8 + - - +
68B LYS* 3.1 26.5 + - - +
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Residues in contact with GLU 65 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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20B ILE* 3.3 6.6 - - + -
21B GLN* 2.7 39.7 + - + +
25B PHE* 3.8 23.1 - - + -
61B THR* 2.9 26.5 + - + +
62B CYS 3.6 4.3 - - - +
64B LYS* 1.4 82.5 - - - +
66B LEU* 1.3 60.1 + - - +
68B LYS* 2.8 35.4 + - - +
69B ILE* 3.1 35.9 + - + +
156B PHE* 4.1 10.8 - - + -
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Residues in contact with LEU 66 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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62B CYS 2.8 20.1 + - - +
63B GLU* 3.7 5.2 - - + +
65B GLU* 1.3 69.1 - - - +
67B ALA* 1.3 59.5 + - - +
69B ILE* 3.3 1.6 + - - -
70B ASN* 2.9 45.5 + - - +
156B PHE* 3.7 19.2 - - + -
175B TRP* 3.7 22.2 - - + -
179B HIS* 3.6 30.1 - - + +
180B VAL* 4.8 3.1 - - + -
183B ALA* 3.8 4.9 - - + -
185B PHE* 3.6 35.4 - - + -
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Residues in contact with ALA 67 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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63B GLU 2.9 17.5 + - - +
64B LYS* 3.5 8.5 - - - +
66B LEU* 1.3 75.2 - - - +
68B LYS* 1.3 54.6 + - - +
70B ASN* 3.5 7.3 + - - +
71B THR* 2.8 39.0 + - - +
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Residues in contact with LYS 68 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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17B LYS 3.1 23.1 + - - +
18B GLN* 3.5 28.3 - - - +
19B TYR 2.9 22.2 + - - -
21B GLN* 3.8 9.1 - - - +
64B LYS* 3.1 12.7 + - + +
65B GLU* 2.8 48.8 + - - +
67B ALA* 1.3 75.6 - - - +
69B ILE* 1.4 56.2 + - - +
71B THR* 3.5 6.4 + - - -
72B PHE* 3.1 29.1 + - - +
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Residues in contact with ILE 69 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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18B GLN 3.5 18.4 - - - +
19B TYR 4.4 0.2 - - - -
20B ILE* 3.7 15.9 - - + +
65B GLU* 3.1 19.5 + - + +
66B LEU* 3.3 5.1 + - - +
68B LYS* 1.4 75.3 - - - +
70B ASN* 1.3 57.7 + - - +
72B PHE 3.5 0.2 + - - -
73B TYR* 2.9 33.4 + - - +
148B TYR* 3.4 19.9 + - + +
152B ASN* 3.6 26.0 - - + +
156B PHE* 3.6 24.5 - - + -
185B PHE* 3.4 37.0 - - + -
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Residues in contact with ASN 70 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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66B LEU* 2.9 41.2 + - - +
67B ALA* 3.8 7.3 - - - +
69B ILE* 1.3 74.3 - - - +
71B THR* 1.3 57.9 + - - +
73B TYR* 4.0 0.7 - - - +
74B SER* 2.9 36.7 + - - -
183B ALA* 3.6 1.0 - - - +
184B PRO* 3.4 29.5 - - + +
185B PHE* 2.8 41.1 + - - +
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Residues in contact with THR 71 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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67B ALA* 2.8 23.5 + - - +
68B LYS* 3.7 6.5 - - - -
70B ASN* 1.3 76.2 - - - +
72B PHE* 1.4 62.3 + - - +
74B SER* 3.9 2.8 - - - -
75B GLU* 3.0 28.7 + - + +
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Residues in contact with PHE 72 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15B TRP* 3.4 59.0 - + + -
18B GLN* 3.5 35.0 - - + +
68B LYS 3.1 17.6 + - - +
71B THR* 1.4 77.3 - - - +
73B TYR* 1.3 63.0 + - - +
75B GLU* 3.3 6.9 + - + +
76B LYS* 2.9 52.2 + - + +
145B LEU* 4.8 0.7 - - + -
148B TYR* 3.4 36.1 - + - +
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Residues in contact with TYR 73 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
189A LYS 4.8 1.2 + - - -
190A LYS* 5.4 0.3 - - - -
191A ILE* 3.4 25.1 + - + +
69B ILE 2.9 18.5 + - - +
70B ASN 4.0 0.7 - - - +
72B PHE* 1.3 81.7 - - - +
74B SER* 1.4 56.4 + - - +
76B LYS* 3.2 3.3 + - - +
77B LEU* 2.7 60.0 + - + +
145B LEU* 3.8 32.5 - - + -
148B TYR* 4.2 14.8 - + + -
149B GLN* 3.2 32.4 + - + -
184B PRO 3.7 17.0 - - - -
185B PHE* 3.5 33.4 - - + -
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Residues in contact with SER 74 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
184A PRO* 4.6 24.5 - - - +
70B ASN 2.9 20.9 + - - -
71B THR* 3.9 3.4 - - - -
73B TYR* 1.4 77.6 - - - +
75B GLU* 1.3 59.3 + - - +
77B LEU* 3.8 5.6 - - - +
78B ALA* 2.9 32.6 + - - +
184B PRO* 4.4 17.8 - - - +
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Residues in contact with GLU 75 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71B THR* 3.0 20.9 + - + +
72B PHE* 3.6 8.1 - - + +
74B SER* 1.3 74.5 - - - +
76B LYS* 1.3 62.3 + - + +
78B ALA* 3.5 5.7 + - - +
79B GLU* 3.1 39.6 + - - +
82B ARG* 4.5 14.2 + - - -
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Residues in contact with LYS 76 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15B TRP* 4.0 28.4 - - + +
72B PHE* 2.9 54.3 + - + +
73B TYR 3.7 3.4 - - - +
75B GLU* 1.3 79.8 - - + +
77B LEU* 1.3 55.7 + - - +
79B GLU* 3.4 36.3 + - - +
80B ALA* 2.9 28.2 + - - +
145B LEU* 3.7 22.6 - - + +
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Residues in contact with LEU 77 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
184A PRO* 6.3 2.9 - - + -
187A THR 6.1 0.7 - - - +
188A CYS* 6.1 0.2 - - - -
189A LYS 3.4 31.6 - - - +
191A ILE* 4.2 22.2 - - + -
194A LEU* 4.2 13.2 - - + -
73B TYR* 2.7 49.5 + - + +
74B SER* 3.9 6.1 - - - +
76B LYS* 1.3 70.0 - - - +
78B ALA* 1.3 65.0 + - - +
80B ALA* 3.3 3.2 + - - +
81B GLN* 3.0 42.9 + - - +
145B LEU* 3.9 5.3 - - + +
188B CYS* 5.7 3.8 - - - -
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Residues in contact with ALA 78 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
179A HIS 5.9 0.4 - - - +
182A VAL* 3.6 36.6 - - + +
183A ALA* 5.1 0.7 - - - -
184A PRO* 4.9 9.6 - - + -
74B SER 2.9 17.6 + - - +
75B GLU* 3.9 7.0 - - - +
77B LEU* 1.3 75.8 - - - +
79B GLU* 1.3 57.1 + - - +
81B GLN* 3.3 4.1 + - - +
82B ARG* 3.0 34.0 + - - +
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Residues in contact with GLU 79 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75B GLU* 3.1 26.7 + - - +
76B LYS* 3.4 42.5 + - - +
78B ALA* 1.3 76.1 - - - +
80B ALA* 1.3 55.4 + - - +
82B ARG* 3.5 34.0 + - - +
83B ARG* 3.0 31.7 + - + +
141B SER* 6.0 1.6 - - - -
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Residues in contact with ALA 80 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
194A LEU* 3.9 8.1 - - + -
76B LYS 2.9 18.3 + - - +
77B LEU* 3.3 8.9 + - - +
79B GLU* 1.3 75.9 - - - +
81B GLN* 1.4 58.6 + - - +
83B ARG* 3.4 1.2 + - - -
84B PHE* 2.9 27.2 + - - +
138B PHE* 3.2 18.3 - - + -
141B SER* 5.2 3.4 - - - +
142B LEU* 3.9 27.8 - - + -
145B LEU* 5.0 5.2 - - + -
----------------------------------------------------------
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Residues in contact with GLN 81 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182A VAL* 3.6 36.8 - - + +
184A PRO* 6.1 0.3 - - - +
187A THR* 3.7 28.6 + - - +
189A LYS* 3.5 33.6 + - + +
194A LEU* 4.0 19.7 - - + -
77B LEU* 3.0 32.5 + - + +
78B ALA* 3.3 2.6 + - - +
80B ALA* 1.4 71.5 - - - +
82B ARG* 1.4 62.6 + - - +
84B PHE* 3.6 7.9 + - - +
85B ALA* 3.2 22.9 + - - +
----------------------------------------------------------
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Residues in contact with ARG 82 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
177A VAL* 5.0 2.5 - - + +
178A ALA* 3.4 40.7 + - + +
179A HIS* 3.8 22.9 + - - -
182A VAL* 3.8 8.7 - - + +
75B GLU* 4.5 12.3 + - - -
78B ALA* 3.0 19.2 + - - +
79B GLU* 3.5 42.9 + - - +
81B GLN* 1.4 75.8 - - - +
83B ARG* 1.4 63.4 + - - +
85B ALA* 3.1 7.3 + - - +
86B THR* 3.0 31.1 + - - +
----------------------------------------------------------
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Residues in contact with ARG 83 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79B GLU* 3.0 19.9 + - + +
80B ALA* 3.4 4.7 + - - +
82B ARG* 1.4 77.6 - - - +
84B PHE* 1.3 55.1 + - - +
86B THR* 3.3 14.3 + - - +
87B LEU* 2.9 64.3 + - + +
90B GLU* 5.2 6.3 + - - -
134B ALA* 4.9 8.5 + - - +
138B PHE* 3.6 25.8 - - + -
----------------------------------------------------------
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Residues in contact with PHE 84 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
189A LYS* 6.1 0.2 - - - -
194A LEU* 3.7 17.3 - - + -
197A GLU* 3.9 48.2 - - + -
198A THR* 3.5 21.1 - - + -
201A VAL* 4.1 5.2 - - + -
80B ALA 2.9 18.0 + - - +
81B GLN* 3.7 8.3 - - - +
82B ARG 3.3 0.2 - - - -
83B ARG* 1.3 75.4 - - - +
85B ALA* 1.3 57.5 + - - +
87B LEU* 3.6 2.5 + - - +
88B GLN* 3.0 75.4 + - + +
135B PHE* 4.5 9.0 - + - -
138B PHE* 3.5 26.2 - + + -
----------------------------------------------------------
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Residues in contact with ALA 85 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
177A VAL* 5.7 9.0 - - + -
182A VAL* 5.8 2.7 - - + -
81B GLN 3.2 10.8 + - - +
82B ARG* 3.1 11.7 + - - +
84B PHE* 1.3 76.5 - - - +
86B THR* 1.4 61.2 + - - +
88B GLN* 3.5 9.7 + - - +
89B ASN* 2.8 39.5 + - - +
----------------------------------------------------------
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Residues in contact with THR 86 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82B ARG* 3.0 20.0 + - - +
83B ARG* 3.6 24.8 - - - +
85B ALA* 1.4 74.8 - - - +
87B LEU* 1.3 57.4 + - + +
89B ASN* 3.3 8.8 + - - +
90B GLU* 2.9 48.9 + - + +
----------------------------------------------------------
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Residues in contact with LEU 87 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83B ARG* 2.9 40.2 + - - +
84B PHE* 3.9 3.8 - - - +
86B THR* 1.3 74.7 - - + +
88B GLN* 1.3 59.2 + - - +
90B GLU* 3.3 19.7 + - + +
91B LEU* 2.9 30.0 + - - +
131B LEU* 4.8 1.9 - - + +
134B ALA* 3.7 36.6 - - + +
135B PHE* 3.7 30.1 - - + -
138B PHE* 3.7 39.5 - - + -
----------------------------------------------------------
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Residues in contact with GLN 88 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
201A VAL* 3.6 24.7 - - + +
84B PHE* 3.0 70.9 + - + +
85B ALA* 4.0 8.2 - - - +
86B THR 3.5 0.2 - - - -
87B LEU* 1.3 74.0 - - - +
89B ASN* 1.4 57.5 + - - +
91B LEU* 3.5 9.4 + - + +
92B GLN* 3.0 29.8 + - - +
135B PHE* 4.8 2.0 - - + -
----------------------------------------------------------
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Residues in contact with ASN 89 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85B ALA* 2.8 28.3 + - - +
86B THR* 3.5 9.2 - - - +
88B GLN* 1.4 74.6 - - - +
90B GLU* 1.4 62.4 + - - +
92B GLN* 3.5 6.3 + - - +
93B SER* 3.1 26.0 + - - -
----------------------------------------------------------
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Residues in contact with GLU 90 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83B ARG* 5.2 3.5 + - - -
86B THR* 2.9 39.0 + - + +
87B LEU* 3.6 22.1 - - + +
89B ASN* 1.4 73.9 - - - +
91B LEU* 1.4 56.3 + - - +
93B SER* 2.7 21.1 + - - +
94B SER* 3.2 17.0 + - - -
131B LEU* 4.0 22.7 - - + +
----------------------------------------------------------
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Residues in contact with LEU 91 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
201A VAL* 3.8 25.1 - - + -
205A GLU* 3.8 42.4 - - + +
87B LEU 2.9 17.1 + - - +
88B GLN* 3.6 7.6 - - + +
89B ASN 3.3 0.2 - - - -
90B GLU* 1.4 73.6 - - - +
92B GLN* 1.3 61.7 + - - +
94B SER* 2.9 6.1 + - - +
95B LEU* 2.9 49.7 + - + +
128B ILE* 6.2 2.7 - - + -
131B LEU* 3.6 23.7 - - + +
135B PHE* 4.5 11.0 - - + -
----------------------------------------------------------
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Residues in contact with GLN 92 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88B GLN 3.0 17.5 + - - +
89B ASN* 3.5 6.5 + - - +
91B LEU* 1.3 77.1 - - - +
93B SER* 1.4 56.0 + - - +
95B LEU* 3.4 18.8 + - - +
96B ASP* 2.9 67.0 + - - +
----------------------------------------------------------
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Residues in contact with SER 93 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89B ASN 3.1 15.0 + - - -
90B GLU* 2.7 26.3 + - - -
92B GLN* 1.4 73.9 - - - +
94B SER* 1.3 60.6 + - - +
96B ASP* 4.0 7.2 + - - +
97B ALA* 3.5 20.1 + - - +
----------------------------------------------------------
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Residues in contact with SER 94 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90B GLU 3.2 16.1 + - - -
91B LEU* 2.9 14.9 + - - +
93B SER* 1.3 75.3 + - - +
95B LEU* 1.4 73.7 + - - +
97B ALA* 3.3 9.4 - - - +
98B GLN* 3.2 32.6 + - - +
124B GLN* 5.8 1.3 - - - -
127B ASN* 4.5 21.5 - - - +
128B ILE* 4.7 12.3 - - - +
131B LEU* 4.2 10.8 - - - +
----------------------------------------------------------
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Residues in contact with LEU 95 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
205A GLU* 4.0 26.9 - - + +
91B LEU* 2.9 46.7 + - + +
92B GLN* 3.4 22.9 + - - +
94B SER* 1.4 77.2 + - - +
96B ASP* 1.4 58.4 + - - +
98B GLN* 3.1 36.1 + - + +
128B ILE* 6.1 5.2 - - + -
----------------------------------------------------------
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Residues in contact with ASP 96 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92B GLN* 2.9 52.8 + - - +
93B SER* 4.3 5.9 - - - +
95B LEU* 1.4 71.8 - - - +
97B ALA* 1.3 61.1 + - - +
98B GLN 3.6 5.2 + - - +
----------------------------------------------------------
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Residues in contact with ALA 97 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93B SER 3.5 14.0 + - - +
94B SER* 3.3 13.2 + - - +
95B LEU 3.2 0.8 - - - -
96B ASP* 1.3 78.6 - - - +
98B GLN* 1.4 61.7 + - + +
120B GLU* 5.0 7.6 - - - +
124B GLN* 5.0 14.4 - - - +
----------------------------------------------------------
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Residues in contact with GLN 98 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94B SER* 3.2 22.2 + - - +
95B LEU* 3.1 23.3 + - + +
96B ASP 3.7 5.4 - - - +
97B ALA* 1.4 80.7 - - - +
121B GLU* 6.1 0.9 - - - +
124B GLN* 3.4 41.8 + - - +
127B ASN* 5.5 0.4 - - - +
128B ILE* 3.5 28.5 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il