Contacts of the helix formed by residues 43 - 99 (chain A) in PDB entry 5IJH
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 43 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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39A VAL* 3.9 3.8 - - - -
42A THR* 1.4 80.0 + - - +
44A GLU* 1.4 60.0 + - - +
45A ASP* 3.4 28.1 + - - +
46A THR* 3.0 49.4 + - - +
47A VAL* 3.5 11.1 - - - +
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Residues in contact with GLU 44 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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39A VAL* 3.8 18.9 - - + +
43A ASP* 1.4 74.5 + - - +
45A ASP* 1.4 58.9 + - - +
47A VAL* 3.7 5.4 + - - +
48A LYS* 3.2 25.8 + - - +
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Residues in contact with ASP 45 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43A ASP* 3.3 19.8 + - - +
44A GLU* 1.4 77.4 - - - +
46A THR* 1.4 59.6 + - + +
48A LYS* 3.5 7.4 + - - +
49A ARG* 3.0 28.6 + - - +
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Residues in contact with THR 46 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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37A PRO* 5.1 4.3 - - - +
42A THR* 2.7 30.7 + - - +
43A ASP* 3.0 27.6 + - - +
45A ASP* 1.4 72.0 - - + +
47A VAL* 1.4 55.9 + - - +
49A ARG* 3.7 9.6 - - - +
50A TYR* 2.9 34.3 + - - +
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Residues in contact with VAL 47 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37A PRO* 3.4 25.1 - - - +
39A VAL* 3.7 26.9 - - + +
42A THR* 3.8 9.4 - - + -
43A ASP 3.5 15.9 + - - +
44A GLU* 3.8 9.0 - - - +
45A ASP 3.3 0.4 - - - -
46A THR* 1.4 71.7 + - - +
48A LYS* 1.4 64.0 + - - +
50A TYR* 3.2 6.3 + - - +
51A PHE* 3.0 54.4 + - + -
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Residues in contact with LYS 48 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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44A GLU 3.2 15.3 + - - +
45A ASP* 3.7 9.6 - - - +
47A VAL* 1.4 79.0 - - - +
49A ARG* 1.4 50.5 + - - +
51A PHE* 3.8 4.4 - - - +
52A ALA* 2.9 35.9 + - - +
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Residues in contact with ARG 49 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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45A ASP 3.0 19.0 + - - +
46A THR* 3.7 11.0 - - - +
47A VAL 3.3 0.2 - - - -
48A LYS* 1.4 71.1 - - - +
50A TYR* 1.4 59.8 + - - +
52A ALA* 3.5 7.2 + - + +
53A LYS* 3.0 67.7 + - - +
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Residues in contact with TYR 50 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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31A SER 3.7 0.2 + - - -
32A ALA* 2.9 37.2 + - - -
35A GLN* 3.3 40.1 + - + +
36A ALA* 3.8 7.2 - - - -
37A PRO* 3.5 28.3 - - + -
46A THR 2.9 20.9 + - - +
47A VAL 3.2 3.8 + - - +
49A ARG* 1.4 74.3 - - - +
51A PHE* 1.4 80.9 + + - +
53A LYS* 3.3 11.3 + - + +
54A PHE* 3.0 31.4 + - + +
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Residues in contact with PHE 51 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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32A ALA* 4.4 8.5 - - + -
33A GLN* 5.7 1.6 - - + -
36A ALA* 3.8 25.4 - - + -
37A PRO* 5.0 2.9 - - + -
47A VAL* 3.0 48.8 + - + +
48A LYS* 4.1 4.7 - - - +
50A TYR* 1.4 92.8 - + - +
52A ALA* 1.4 54.7 - - - +
54A PHE* 3.3 7.2 + + + +
55A GLU* 2.8 42.7 + - + +
167A LEU* 3.7 35.2 - - + -
171A ARG* 5.7 4.7 - - - +
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Residues in contact with ALA 52 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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48A LYS 2.9 20.1 + - - +
49A ARG* 3.6 10.3 - - + +
51A PHE* 1.4 74.6 - - - +
53A LYS* 1.4 60.7 + - - +
55A GLU* 3.2 10.0 + - - +
56A GLU* 3.1 22.9 + - - +
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Residues in contact with LYS 53 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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49A ARG* 3.0 46.1 + - - +
50A TYR* 3.4 10.1 - - + +
52A ALA* 1.4 72.1 - - - +
54A PHE* 1.4 63.2 + - - +
56A GLU* 3.3 8.9 + - - +
57A LYS* 3.2 20.6 + - - +
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Residues in contact with PHE 54 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28A MET* 3.7 33.7 - - + -
29A LEU* 3.9 16.6 - - + -
32A ALA* 3.6 34.5 - - + -
50A TYR* 3.0 22.3 + - + +
51A PHE* 3.3 10.7 + + + +
53A LYS* 1.4 74.2 - - - +
55A GLU* 1.4 54.7 + - - +
57A LYS* 3.2 12.1 + - + +
58A PHE* 2.8 60.5 + + + +
167A LEU* 3.7 34.1 - - + -
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Residues in contact with GLU 55 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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51A PHE* 2.8 26.4 + - + +
52A ALA* 3.2 8.9 + - - +
54A PHE* 1.4 70.9 - - - +
56A GLU* 1.3 60.2 + - - +
58A PHE* 4.2 1.3 - - - +
59A PHE* 3.0 48.9 + - + +
163A HIS* 2.7 38.5 + - - -
167A LEU* 3.4 16.1 - - + +
171A ARG* 2.8 46.4 + - - +
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Residues in contact with GLU 56 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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52A ALA 3.1 13.2 + - - +
53A LYS* 3.7 9.9 - - - +
54A PHE 3.3 0.4 - - - -
55A GLU* 1.3 77.3 - - - +
57A LYS* 1.4 62.6 + - - +
59A PHE* 3.8 2.8 - - - +
60A GLN* 2.9 58.2 + - - +
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Residues in contact with LYS 57 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28A MET* 3.6 40.6 - - + +
53A LYS 3.2 10.8 + - - +
54A PHE* 3.2 15.5 + - + +
56A GLU* 1.4 77.5 - - - +
58A PHE* 1.4 56.5 + - - +
60A GLN* 3.3 11.1 + - - +
61A THR* 2.8 35.2 + - - +
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Residues in contact with PHE 58 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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25A PHE* 3.7 21.7 - + + -
28A MET* 3.9 17.5 - - - -
29A LEU* 3.9 21.8 - - + -
54A PHE* 2.8 46.2 + + + +
55A GLU* 3.8 6.3 - - - +
57A LYS* 1.4 72.2 - - - +
59A PHE* 1.4 68.5 + + - +
61A THR* 3.2 6.6 + - - -
62A CYS* 3.0 47.5 + - - -
159A ILE* 4.6 9.6 - - + -
160A LEU* 4.0 13.9 - - + -
163A HIS* 3.5 40.4 - + + -
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Residues in contact with PHE 59 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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55A GLU* 3.0 56.5 + - + +
56A GLU* 4.4 2.9 - - - +
58A PHE* 1.4 80.4 - + - +
60A GLN* 1.3 59.0 + - - +
62A CYS* 3.5 6.9 - - - +
63A GLU* 3.0 38.0 + - - +
160A LEU* 4.0 15.9 - - + -
163A HIS* 3.8 13.2 - + - -
171A ARG* 3.8 13.0 - - + -
172A GLY* 3.7 21.8 - - - -
175A TRP* 3.5 49.1 - + + +
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Residues in contact with GLN 60 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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56A GLU* 2.9 54.2 + - - +
57A LYS* 3.3 9.7 + - - +
59A PHE* 1.3 75.2 - - - +
61A THR* 1.4 58.5 + - - +
63A GLU* 3.4 16.6 + - - +
64A LYS* 2.9 35.2 + - + +
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Residues in contact with THR 61 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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25A PHE* 3.7 22.4 - - + -
28A MET* 3.7 25.7 - - + +
57A LYS* 2.8 20.8 + - - +
58A PHE 3.4 8.3 - - - -
60A GLN* 1.4 74.1 - - - +
62A CYS* 1.3 57.6 + - - +
64A LYS* 3.4 7.9 + - + +
65A GLU* 2.9 35.3 + - + +
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Residues in contact with CYS 62 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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25A PHE* 3.9 18.6 - - - -
58A PHE* 3.0 43.7 + - - +
59A PHE* 3.5 14.1 - - - +
60A GLN 3.3 0.2 - - - -
61A THR* 1.3 74.8 - - - +
63A GLU* 1.4 51.4 + - - +
65A GLU* 3.2 3.8 + - - +
66A LEU* 2.8 36.0 + - - +
156A PHE* 3.9 8.3 - - + -
159A ILE* 5.5 1.6 - - - -
160A LEU* 4.1 16.2 - - - -
175A TRP* 3.6 24.6 - - + -
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Residues in contact with GLU 63 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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59A PHE* 3.0 25.3 + - - +
60A GLN* 3.6 15.3 - - - +
62A CYS* 1.4 73.4 - - - +
64A LYS* 1.3 57.7 + - + +
66A LEU* 3.4 3.0 + - - +
67A ALA* 2.9 32.3 + - - +
175A TRP* 3.7 27.7 + - + -
179A HIS* 4.9 6.0 - - + +
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Residues in contact with LYS 64 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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60A GLN* 2.9 21.3 + - + +
61A THR* 3.6 8.7 - - + +
62A CYS 3.3 0.2 - - - -
63A GLU* 1.3 76.3 - - + +
65A GLU* 1.4 58.7 + - + +
67A ALA* 3.4 7.7 + - + +
68A LYS* 3.1 27.9 + - - +
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Residues in contact with GLU 65 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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20A ILE* 3.4 5.4 - - + -
21A GLN* 2.7 46.7 + - + -
25A PHE* 3.6 23.3 - - + -
61A THR* 2.9 29.6 + - + +
62A CYS 3.6 3.6 - - - +
64A LYS* 1.4 69.7 - - - +
66A LEU* 1.3 60.2 + - - +
68A LYS* 2.9 35.4 + - - +
69A ILE* 3.1 37.2 + - + +
156A PHE* 4.1 11.0 - - + -
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Residues in contact with LEU 66 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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62A CYS 2.8 20.4 + - - +
63A GLU* 3.8 4.9 - - - +
65A GLU* 1.3 69.6 - - - +
67A ALA* 1.3 60.1 + - - +
69A ILE* 3.3 1.8 + - + -
70A ASN* 2.9 44.7 + - - +
156A PHE* 3.7 19.9 - - + -
175A TRP* 3.7 21.5 - - + -
179A HIS* 3.6 30.5 - - + +
180A VAL* 4.8 3.6 - - + -
183A ALA* 3.9 4.9 - - + -
185A PHE* 3.6 35.2 - - + -
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Residues in contact with ALA 67 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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63A GLU 2.9 18.5 + - - +
64A LYS* 3.5 8.7 - - - +
66A LEU* 1.3 75.2 - - - +
68A LYS* 1.4 54.4 + - - +
70A ASN* 3.4 7.1 + - - +
71A THR* 2.8 38.6 + - - +
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Residues in contact with LYS 68 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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17A LYS 3.1 24.7 + - - +
18A GLN* 3.7 28.9 + - - +
19A TYR 2.9 21.4 + - - -
21A GLN* 3.8 12.2 - - - +
64A LYS 3.1 13.7 + - - +
65A GLU* 2.9 48.7 + - - +
67A ALA* 1.4 74.6 - - - +
69A ILE* 1.4 57.1 + - - +
71A THR* 3.4 5.4 + - - -
72A PHE* 3.1 29.3 + - - +
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Residues in contact with ILE 69 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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18A GLN 3.5 18.4 - - - +
19A TYR 4.4 0.2 - - - -
20A ILE* 3.8 16.2 - - - +
65A GLU* 3.1 19.5 + - + +
66A LEU* 3.3 5.6 + - - +
68A LYS* 1.4 75.4 - - - +
70A ASN* 1.3 58.5 + - - +
72A PHE 3.5 0.2 + - - -
73A TYR* 3.0 32.9 + - - +
148A TYR* 3.4 19.2 + - + +
152A ASN* 3.4 26.0 - - + +
156A PHE* 3.7 23.8 - - + -
185A PHE* 3.5 36.8 - - + -
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Residues in contact with ASN 70 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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66A LEU* 2.9 40.2 + - - +
67A ALA* 3.8 6.7 - - - +
69A ILE* 1.3 74.5 - - - +
71A THR* 1.4 58.5 + - - +
73A TYR* 3.9 0.7 - - - +
74A SER* 2.9 36.7 + - - -
183A ALA* 4.0 2.0 - - - +
184A PRO* 3.4 29.0 - - + +
185A PHE* 2.8 42.3 + - - +
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Residues in contact with THR 71 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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67A ALA* 2.8 24.0 + - - +
68A LYS* 3.8 5.8 - - - -
70A ASN* 1.4 73.8 - - - +
72A PHE* 1.3 65.5 + - - +
74A SER* 3.8 3.9 - - - -
75A GLU* 3.0 29.1 + - + +
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Residues in contact with PHE 72 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15A TRP* 3.5 58.3 - + + -
18A GLN* 3.4 41.7 - - + +
68A LYS 3.1 11.6 + - - +
71A THR* 1.3 76.9 - - - +
73A TYR* 1.3 61.3 + - - +
75A GLU* 3.3 6.4 + - + +
76A LYS* 2.9 51.6 + - + +
145A LEU* 4.8 1.1 - - + -
148A TYR* 3.4 34.8 - + - +
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Residues in contact with TYR 73 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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69A ILE 3.0 19.1 + - - +
70A ASN 3.9 1.1 - - - +
72A PHE* 1.3 80.4 - - - +
74A SER* 1.4 56.1 + - - +
76A LYS* 3.3 2.6 + - - +
77A LEU* 2.7 60.9 + - + +
145A LEU* 3.8 32.3 - - + +
148A TYR* 4.2 14.1 - + + -
149A GLN* 3.3 32.8 + - + -
184A PRO 3.7 16.6 - - - -
185A PHE* 3.5 33.7 - - + -
189B LYS 4.7 1.3 + - - -
190B LYS* 5.4 0.2 - - - -
191B ILE* 3.5 24.6 + - + +
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Residues in contact with SER 74 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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70A ASN 2.9 23.7 + - - -
71A THR* 3.9 4.5 - - - -
73A TYR* 1.4 74.1 - - - +
75A GLU* 1.3 59.2 + - - +
77A LEU* 3.8 5.8 - - - +
78A ALA* 2.9 32.6 + - - +
184A PRO* 4.3 18.4 - - - +
74B SER* 5.8 0.3 + - - -
184B PRO* 4.5 26.6 - - - +
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Residues in contact with GLU 75 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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71A THR* 3.0 20.5 + - + +
72A PHE* 3.6 7.9 - - + +
74A SER* 1.3 75.0 - - - +
76A LYS* 1.4 61.2 + - + +
78A ALA* 3.4 5.3 + - - +
79A GLU* 3.1 39.5 + - - +
82A ARG* 4.7 12.3 + - - -
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Residues in contact with LYS 76 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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15A TRP* 4.0 27.0 - - + +
72A PHE* 2.9 54.4 + - + +
73A TYR 3.7 3.8 - - - +
75A GLU* 1.4 77.9 - - + +
77A LEU* 1.3 56.8 + - - +
79A GLU* 3.4 36.7 + - - +
80A ALA* 2.9 28.6 + - - +
145A LEU* 3.7 21.8 - - + +
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Residues in contact with LEU 77 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73A TYR* 2.7 51.7 + - + +
74A SER* 3.8 6.3 - - - +
76A LYS* 1.3 68.1 - - - +
78A ALA* 1.4 61.9 + - - +
80A ALA* 3.3 3.3 + - + +
81A GLN* 3.0 47.4 + - - +
145A LEU* 3.9 4.7 - - + +
188A CYS* 6.3 0.2 - - + -
184B PRO* 6.6 0.4 - - + -
187B THR 6.0 0.4 - - - +
188B CYS* 5.6 3.6 - - - -
189B LYS* 3.3 33.4 - - + +
191B ILE* 4.2 22.2 - - + -
194B LEU* 4.2 13.2 - - + -
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Residues in contact with ALA 78 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
74A SER 2.9 18.0 + - - +
75A GLU* 3.9 6.7 - - - +
77A LEU* 1.4 75.2 - - - +
79A GLU* 1.3 56.2 + - - +
81A GLN* 3.3 5.0 + - - +
82A ARG* 3.0 33.7 + - - +
179B HIS 6.0 0.4 - - - +
182B VAL* 3.4 37.7 - - + +
183B ALA* 5.0 0.7 - - - -
184B PRO* 4.8 9.9 - - + -
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Residues in contact with GLU 79 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75A GLU* 3.1 27.4 + - - +
76A LYS* 3.4 42.4 + - - +
78A ALA* 1.3 76.1 - - - +
80A ALA* 1.4 56.8 + - - +
82A ARG* 3.4 32.4 + - - +
83A ARG* 2.9 31.8 + - + +
141A SER* 6.0 1.6 - - - -
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Residues in contact with ALA 80 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76A LYS 2.9 16.6 + - - +
77A LEU* 3.3 9.6 + - - +
79A GLU* 1.4 74.1 - - - +
81A GLN* 1.4 58.7 + - - +
83A ARG* 3.4 1.4 + - - -
84A PHE* 2.9 28.1 + - - +
138A PHE* 3.2 17.4 - - + -
141A SER* 5.3 3.8 - - - +
142A LEU* 3.9 16.6 - - + -
145A LEU* 5.0 5.2 - - + -
194B LEU* 3.8 19.3 - - + -
----------------------------------------------------------
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Residues in contact with GLN 81 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77A LEU* 3.0 33.6 + - + +
78A ALA* 3.7 4.8 - - - +
80A ALA* 1.4 70.0 - - - +
82A ARG* 1.4 63.8 - - - +
84A PHE* 3.6 7.6 + - - +
85A ALA* 3.2 22.2 + - - +
182B VAL* 3.8 29.1 - - + +
187B THR* 3.7 30.8 + - - +
189B LYS* 3.5 39.7 + - + +
194B LEU* 4.1 20.2 - - + -
----------------------------------------------------------
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Residues in contact with ARG 82 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75A GLU* 4.7 9.5 + - - -
78A ALA* 3.0 18.5 + - - +
79A GLU* 3.5 44.1 + - - +
81A GLN* 1.4 75.2 - - - +
83A ARG* 1.4 60.0 + - - +
85A ALA* 3.1 7.7 + - - +
86A THR* 3.0 36.1 + - - +
177B VAL* 4.9 2.9 - - + +
178B ALA* 3.3 45.1 + - - +
179B HIS* 4.3 17.3 + - - -
182B VAL* 3.7 10.4 - - + +
----------------------------------------------------------
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Residues in contact with ARG 83 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A GLU* 2.9 21.2 + - + +
80A ALA* 3.8 4.9 - - - +
82A ARG* 1.4 77.2 - - - +
84A PHE* 1.3 56.8 + - - +
86A THR* 3.3 16.4 + - - +
87A LEU* 2.9 62.3 + - + +
90A GLU* 5.2 3.8 + - - -
134A ALA* 4.9 9.2 + - - +
138A PHE* 3.6 25.8 - - + -
----------------------------------------------------------
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Residues in contact with PHE 84 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80A ALA 2.9 17.4 + - - +
81A GLN* 3.7 7.2 - - - +
83A ARG* 1.3 75.4 - - - +
85A ALA* 1.3 56.8 + - - +
87A LEU* 3.9 2.4 - - - +
88A GLN* 3.0 73.7 + - + +
135A PHE* 4.5 9.9 - + - -
138A PHE* 3.6 27.5 - + + -
189B LYS* 4.6 4.5 - - - -
194B LEU* 3.6 18.4 - - + -
197B GLU* 3.8 48.7 - - + -
198B THR* 3.6 18.4 - - - -
201B VAL* 4.0 6.5 - - + -
----------------------------------------------------------
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Residues in contact with ALA 85 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81A GLN 3.2 9.9 + - - +
82A ARG* 3.1 11.5 + - - +
84A PHE* 1.3 76.9 - - - +
86A THR* 1.4 61.4 + - - +
88A GLN* 3.5 9.8 + - - +
89A ASN* 2.8 39.2 + - - +
177B VAL* 5.8 8.3 - - + -
182B VAL* 5.7 2.7 - - + -
----------------------------------------------------------
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Residues in contact with THR 86 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82A ARG* 3.0 22.9 + - - +
83A ARG* 3.6 25.0 - - - +
85A ALA* 1.4 73.9 - - - +
87A LEU* 1.3 56.8 + - - +
89A ASN* 3.3 9.2 + - - +
90A GLU* 2.9 49.5 + - + +
----------------------------------------------------------
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Residues in contact with LEU 87 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83A ARG* 2.9 43.5 + - - +
84A PHE* 3.9 3.8 - - - +
86A THR* 1.3 73.4 - - + +
88A GLN* 1.3 59.1 + - - +
90A GLU* 3.3 19.6 + - + +
91A LEU* 2.9 29.6 + - - +
131A LEU* 4.7 3.0 - - + +
134A ALA* 3.6 36.6 - - + +
135A PHE* 3.7 30.9 - - + -
138A PHE* 3.7 38.8 - - + -
----------------------------------------------------------
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Residues in contact with GLN 88 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84A PHE* 3.0 64.4 + - + +
85A ALA* 4.0 7.3 - - - +
87A LEU* 1.3 73.6 - - - +
89A ASN* 1.4 57.3 + - - +
91A LEU* 3.5 9.2 + - + +
92A GLN* 3.0 29.5 + - - +
135A PHE* 4.8 1.3 - - + -
201B VAL* 3.4 31.8 - - + +
----------------------------------------------------------
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Residues in contact with ASN 89 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85A ALA* 2.8 28.7 + - - +
86A THR* 3.5 9.5 - - - +
88A GLN* 1.4 75.0 - - - +
90A GLU* 1.4 62.7 + - - +
92A GLN* 3.5 5.3 + - - +
93A SER* 3.1 26.0 + - - -
----------------------------------------------------------
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Residues in contact with GLU 90 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83A ARG* 5.2 3.6 + - - -
86A THR* 2.9 38.5 + - + +
87A LEU* 3.6 22.5 - - - +
89A ASN* 1.4 74.4 - - - +
91A LEU* 1.4 57.3 + - - +
93A SER* 2.7 19.6 + - - -
94A SER* 3.0 21.0 + - - -
131A LEU* 4.0 21.5 - - + +
----------------------------------------------------------
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Residues in contact with LEU 91 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87A LEU 2.9 17.3 + - - +
88A GLN* 3.6 7.6 - - + +
90A GLU* 1.4 73.1 - - - +
92A GLN* 1.4 62.1 - - - +
94A SER* 3.3 2.8 + - - -
95A LEU* 2.9 57.7 + - + +
128A ILE* 6.2 3.4 - - + -
131A LEU* 3.6 23.3 - - + +
135A PHE* 4.5 10.5 - - + -
201B VAL* 3.8 33.9 - - + +
204B ASN 5.6 2.5 - - - +
----------------------------------------------------------
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Residues in contact with GLN 92 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88A GLN 3.0 18.2 + - - +
89A ASN* 3.5 6.3 + - - +
91A LEU* 1.4 77.5 - - - +
93A SER* 1.4 56.8 + - - +
95A LEU* 3.4 19.7 + - - +
96A ASP* 2.9 66.7 + - - +
----------------------------------------------------------
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Residues in contact with SER 93 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89A ASN 3.1 14.6 + - - -
90A GLU* 2.7 26.2 + - - +
92A GLN* 1.4 76.2 - - - +
94A SER* 1.3 57.3 + - - +
96A ASP* 4.3 6.1 - - - +
97A ALA* 3.2 25.1 + - - +
----------------------------------------------------------
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Residues in contact with SER 94 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90A GLU 3.0 18.6 + - - -
91A LEU* 3.7 7.0 - - - -
93A SER* 1.3 73.9 + - - +
95A LEU* 1.4 65.9 + - - +
97A ALA* 3.5 7.5 + - - +
98A GLN* 3.4 28.7 + - - +
124A GLN* 6.5 0.4 - - - -
127A ASN* 3.6 24.7 + - - +
128A ILE* 5.0 16.2 - - - -
131A LEU* 4.0 12.4 - - - +
----------------------------------------------------------
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Residues in contact with LEU 95 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91A LEU* 2.9 48.9 + - + +
92A GLN* 3.7 22.4 - - - +
94A SER* 1.4 74.6 - - - +
96A ASP* 1.4 63.3 + - - +
98A GLN* 3.4 20.4 + - - +
99A LYS* 3.9 5.5 + - - +
128A ILE* 5.9 8.3 - - + -
----------------------------------------------------------
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Residues in contact with ASP 96 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92A GLN* 2.9 53.2 + - - +
93A SER* 4.3 6.1 + - - +
95A LEU* 1.4 71.2 - - - +
97A ALA* 1.4 56.9 + - - +
99A LYS* 3.1 28.0 - - - +
----------------------------------------------------------
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Residues in contact with ALA 97 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93A SER 3.2 19.2 + - - +
94A SER* 3.5 9.9 - - - +
95A LEU 3.3 0.2 - - - -
96A ASP* 1.4 76.1 - - - +
98A GLN* 1.4 70.1 + - - +
99A LYS 3.5 5.5 + - - +
124A GLN* 6.0 3.6 - - + -
----------------------------------------------------------
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Residues in contact with GLN 98 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94A SER 3.4 15.3 + - - +
95A LEU* 3.7 10.3 - - - +
96A ASP 3.3 1.0 - - - -
97A ALA* 1.4 81.8 - - - +
99A LYS* 1.3 61.6 + - + +
123A VAL 5.5 2.4 + - - -
124A GLN* 3.4 39.6 + - - +
128A ILE* 4.8 16.9 - - + +
----------------------------------------------------------
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Residues in contact with LYS 99 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95A LEU 3.9 5.6 + - - +
96A ASP* 3.1 20.7 + - - +
97A ALA 3.3 5.6 - - - +
98A GLN* 1.3 83.0 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il