Contacts of the helix formed by residues 347 - 390 (chain C) in PDB entry 5IWM
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 347 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
206C ILE* 3.8 6.2 - - - +
234C TYR 3.1 15.7 - - - +
235C GLU 3.6 19.7 + - - +
236C THR 4.4 3.6 - - - +
237C GLY 4.4 2.5 - - - +
335C MET* 3.9 6.7 - - - -
346C ILE* 1.3 75.4 - - - +
348C LEU* 1.3 67.1 + - - +
349C LYS* 2.9 33.7 + - - +
350C GLU* 2.9 37.2 + - - +
351C ALA* 3.1 19.9 + - - +
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Residues in contact with LEU 348 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
168C LEU* 4.0 24.2 - - + -
186C HIS* 5.4 1.1 - - - +
191C LEU* 5.3 1.1 - - + -
206C ILE* 4.5 4.9 - - + -
209C LEU* 4.4 14.1 - - + -
210C MET* 4.4 11.0 - - + -
213C ILE* 4.0 32.1 - - + -
234C TYR* 3.1 62.5 + - + +
335C MET* 3.8 9.9 - - + +
347C ASN* 1.3 74.9 - - - +
349C LYS* 1.3 62.8 + - - +
351C ALA* 3.4 5.1 + - - +
352C LEU* 3.1 34.4 + - + +
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Residues in contact with LYS 349 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
198C LEU* 4.0 14.8 - - + -
202C PRO 2.9 27.3 + - - -
203C ASP* 3.6 5.3 + - - +
204C ILE* 2.8 32.1 + - - +
205C SER* 5.4 1.1 - - - -
206C ILE* 3.7 19.2 - - + +
209C LEU* 3.8 17.9 - - + -
347C ASN* 2.9 15.1 + - - +
348C LEU* 1.3 71.9 - - - +
350C GLU* 1.3 53.5 + - + +
352C LEU* 3.1 4.4 + - - +
353C VAL* 2.7 51.6 + - + +
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Residues in contact with GLU 350 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
344C LYS* 3.0 28.6 + - - -
345C LEU 3.9 4.2 - - - +
346C ILE* 3.7 22.4 - - + +
347C ASN* 2.9 53.3 + - - +
349C LYS* 1.3 70.9 - - - +
351C ALA* 1.3 58.1 + - - +
353C VAL* 3.1 7.3 + - - +
354C HIS* 3.0 45.7 + - + +
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Residues in contact with ALA 351 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38C VAL* 4.3 10.5 - - + +
167C LEU* 4.8 3.6 - - + -
168C LEU* 4.1 26.8 - - + +
335C MET* 5.7 2.0 - - - -
346C ILE* 3.6 28.3 - - + +
347C ASN 3.1 10.5 + - - +
348C LEU* 3.6 9.0 - - - +
350C GLU* 1.3 75.7 - - - +
352C LEU* 1.3 63.0 + - - +
354C HIS* 3.7 1.7 + - - +
355C TYR* 3.2 23.4 + - - +
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Residues in contact with LEU 352 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
165C PRO* 5.4 4.7 - - + -
168C LEU* 3.7 24.5 - - + -
191C LEU* 4.7 3.6 - - + +
194C GLY 4.8 5.8 - - - +
195C VAL* 3.9 26.0 - - + +
198C LEU* 3.6 13.5 - - + +
209C LEU* 3.9 35.7 - - + -
213C ILE* 3.9 25.8 - - + -
348C LEU* 3.1 22.0 + - + +
349C LYS* 3.1 7.7 + - - +
351C ALA* 1.3 73.4 - - - +
353C VAL* 1.3 60.3 + - - +
355C TYR* 3.5 5.5 + - + +
356C LEU* 3.0 30.3 + - - +
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Residues in contact with VAL 353 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
198C LEU* 3.8 24.9 - - + -
202C PRO 5.7 0.4 - - - +
349C LYS* 2.7 41.6 + - + +
350C GLU* 3.1 7.4 + - - +
352C LEU* 1.3 69.9 - - - +
354C HIS* 1.3 74.4 + - + +
356C LEU* 3.1 4.4 + - - +
357C GLU* 2.9 27.0 + - + +
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Residues in contact with HIS 354 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38C VAL* 3.7 32.3 - - + +
39C ARG* 4.6 4.0 - - + +
339C VAL* 3.4 39.2 - - + +
344C LYS* 5.5 2.4 - - - +
346C ILE* 4.9 2.0 - - + +
350C GLU* 3.0 45.7 + - + +
353C VAL* 1.3 80.7 - - + +
355C TYR* 1.3 61.9 + - - +
357C GLU* 3.5 5.6 + - - +
358C HIS* 3.1 23.9 + - - +
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Residues in contact with TYR 355 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38C VAL 4.6 10.9 + - - +
39C ARG* 3.6 21.1 - - - +
162C ALA 3.0 18.2 + - - -
163C ARG 3.0 7.6 + - - -
164C PHE* 2.8 38.3 + - - -
165C PRO* 3.4 35.0 - - + -
166C ASN 5.1 0.2 - - - -
195C VAL* 4.5 18.8 - - + -
351C ALA 3.2 19.9 + - - +
352C LEU* 3.9 4.7 - - + +
353C VAL 3.2 0.2 - - - -
354C HIS* 1.3 74.1 - - - +
356C LEU* 1.3 67.8 + - - +
358C HIS* 3.2 6.7 + + - +
359C GLN* 3.0 47.1 + - + +
473C LEU* 3.7 10.0 - - + +
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Residues in contact with LEU 356 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
195C VAL* 4.1 21.3 - - + +
198C LEU* 4.0 22.0 - - + +
199C SER* 3.9 36.3 - - - +
352C LEU 3.0 18.4 + - - +
353C VAL* 3.7 4.0 - - - +
355C TYR* 1.3 80.6 - - - +
357C GLU* 1.3 64.2 + - - +
359C GLN* 3.0 16.0 + - + +
360C LYS* 3.1 39.4 + - - +
466C LEU* 4.7 2.5 - - + -
469C VAL* 4.6 19.3 - - + -
473C LEU* 5.2 0.7 - - + -
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Residues in contact with GLU 357 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
353C VAL* 2.9 20.8 + - + +
354C HIS* 4.0 6.7 - - - +
356C LEU* 1.3 76.6 - - - +
358C HIS* 1.3 61.0 + - - +
360C LYS* 3.4 32.2 + - - +
361C THR* 3.2 35.3 + - - +
364C ARG* 5.4 4.3 + - - -
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Residues in contact with HIS 358 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39C ARG* 3.7 48.4 + - + +
144C ILE* 4.3 4.5 - - + -
159C VAL* 4.1 21.1 - - + -
160C LEU 3.0 26.5 + - - -
161C PRO 3.2 7.2 + - - -
354C HIS 3.1 17.9 + - - +
355C TYR* 3.5 5.8 - - - +
356C LEU 3.2 0.2 - - - -
357C GLU* 1.3 76.5 - - - +
359C GLN* 1.3 85.4 + - - +
361C THR* 3.6 7.3 + - - -
362C VAL* 3.1 47.0 + - + +
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Residues in contact with GLN 359 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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161C PRO 3.0 13.1 + - - -
162C ALA 2.6 26.6 + - - +
163C ARG* 2.9 35.9 + - - -
355C TYR* 3.0 44.2 + - + +
356C LEU* 3.0 11.9 + - + +
358C HIS* 1.3 90.7 - - - +
360C LYS* 1.3 63.4 + - - +
362C VAL* 3.6 4.2 + - - +
363C VAL* 3.2 29.9 + - + +
469C VAL* 4.0 21.1 - - + -
473C LEU* 5.1 6.4 - - + +
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Residues in contact with LYS 360 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356C LEU* 3.1 35.4 + - + +
357C GLU* 3.6 33.3 + - - +
358C HIS 3.3 0.2 - - - -
359C GLN* 1.3 73.1 - - - +
361C THR* 1.3 65.0 + - - +
363C VAL* 3.5 2.4 + - - +
364C ARG* 3.0 34.1 + - - +
465C LEU* 4.2 16.0 - - + +
466C LEU* 3.7 33.9 - - + +
469C VAL* 4.4 10.5 - - + -
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Residues in contact with THR 361 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143C THR 5.2 1.3 - - - +
357C GLU* 3.2 25.2 + - - +
358C HIS* 4.0 7.1 - - - -
359C GLN 3.4 0.2 - - - -
360C LYS* 1.3 76.8 - - - +
362C VAL* 1.3 57.7 + - + +
364C ARG* 3.4 23.7 + - - +
365C ARG* 2.9 59.9 + - + +
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Residues in contact with VAL 362 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137C ARG 5.4 1.3 - - - +
138C ASP* 6.0 0.7 - - + -
143C THR* 3.3 40.9 - - + +
144C ILE* 4.4 1.8 - - + -
161C PRO* 4.1 17.0 - - + +
163C ARG* 4.2 26.2 - - - +
358C HIS* 3.1 46.2 + - + +
359C GLN* 3.9 7.2 - - - +
361C THR* 1.3 76.7 - - - +
363C VAL* 1.3 59.7 + - + +
365C ARG 3.6 0.2 + - - -
366C ARG* 3.1 23.1 + - + +
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Residues in contact with VAL 363 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163C ARG* 3.5 34.1 - - - +
359C GLN 3.2 18.3 + - - +
360C LYS 4.1 1.3 - - - +
362C VAL* 1.3 74.5 - - + +
364C ARG* 1.3 63.9 + - - +
366C ARG* 3.4 25.3 + - - +
367C THR* 2.8 32.3 + - - +
458C ILE* 5.8 0.2 - - + -
465C LEU* 4.8 9.6 - - + +
468C LEU* 4.0 19.3 - - + -
469C VAL* 3.8 25.4 - - + -
472C GLU* 4.3 2.9 - - - +
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Residues in contact with ARG 364 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
357C GLU* 5.4 4.6 + - - -
360C LYS* 3.0 36.1 + - - +
361C THR* 3.9 28.2 + - - +
363C VAL* 1.3 78.1 - - - +
365C ARG* 1.3 59.1 + - - +
367C THR* 3.3 6.4 + - - -
368C GLN* 3.0 53.7 + - - +
459C LEU* 4.1 11.9 - - + -
462C GLU* 4.9 13.7 + - - -
465C LEU* 3.7 27.9 - - + +
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Residues in contact with ARG 365 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141C LYS 3.9 2.8 - - - +
142C ASP* 2.8 53.9 + - - +
143C THR* 3.0 25.0 + - - -
144C ILE* 3.4 13.3 + - - +
145C ASP* 2.9 36.8 + - - +
361C THR* 2.9 39.3 + - + +
362C VAL 4.0 0.4 - - - +
364C ARG* 1.3 74.2 - - + +
366C ARG* 1.3 60.1 + - - +
368C GLN* 3.5 18.3 + - - +
369C TYR* 3.0 28.4 + - - +
372C ARG* 5.5 0.5 + - - -
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Residues in contact with ARG 366 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137C ARG* 4.5 3.8 - - - +
138C ASP* 3.2 31.6 + - + -
141C LYS* 4.0 22.2 - - + +
143C THR* 3.6 11.1 - - + +
163C ARG* 3.4 15.2 - - - +
362C VAL* 3.1 20.3 + - - +
363C VAL* 3.7 16.5 + - - +
364C ARG 3.3 0.2 - - - -
365C ARG* 1.3 71.9 - - - +
367C THR* 1.3 64.8 + - - +
369C TYR* 3.1 2.6 + - - +
370C ASN* 2.9 51.8 + - - +
468C LEU* 3.9 16.0 - - - +
472C GLU* 2.8 42.4 + - - -
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Residues in contact with THR 367 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363C VAL* 2.8 28.6 + - - +
364C ARG* 3.6 5.7 - - - -
366C ARG* 1.3 82.4 + - - +
368C GLN* 1.3 62.0 + - - +
370C ASN* 3.3 8.8 + - - +
371C LEU* 3.0 24.1 + - - +
455C LEU* 3.7 40.7 - - + +
458C ILE* 4.3 22.2 - - + +
459C LEU* 3.9 18.2 - - + -
465C LEU* 6.1 0.3 - - - +
468C LEU* 5.1 1.2 - - - +
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Residues in contact with GLN 368 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
364C ARG* 3.0 41.3 + - - +
365C ARG* 3.7 21.5 - - - +
366C ARG 3.3 0.2 - - - -
367C THR* 1.3 75.2 - - - +
369C TYR* 1.3 60.7 + - - +
371C LEU* 3.6 8.4 - - - +
372C ARG* 3.2 41.3 + - - +
459C LEU* 3.7 24.1 - - + +
----------------------------------------------------------
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Residues in contact with TYR 369 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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140C ASN 3.9 14.0 + - - -
141C LYS* 3.2 56.3 - - + +
142C ASP* 4.0 11.0 - - + -
365C ARG 3.0 11.6 + - - +
366C ARG 3.1 2.9 + - - +
368C GLN* 1.3 73.0 - - - +
370C ASN* 1.3 77.8 + - - +
371C LEU 3.1 1.5 + - - -
372C ARG* 3.3 24.2 + - - +
373C LYS* 3.1 64.6 + - + +
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Residues in contact with ASN 370 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141C LYS* 4.0 16.6 + - - +
366C ARG* 2.9 43.9 + - - +
367C THR* 3.8 4.8 - - - +
369C TYR* 1.3 90.0 - - - +
371C LEU* 1.3 57.4 + - - +
373C LYS* 3.9 4.4 - - - +
374C ALA* 3.0 30.7 + - - +
451C TYR* 3.6 28.9 + - + +
455C LEU* 3.7 14.4 - - + +
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Residues in contact with LEU 371 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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367C THR 3.0 16.4 + - - +
368C GLN* 3.6 7.0 - - - +
369C TYR 3.1 0.2 - - - -
370C ASN* 1.3 73.6 - - - +
372C ARG* 1.3 61.9 + - + +
374C ALA* 3.1 4.0 + - - +
375C LYS* 2.9 64.3 + - + +
452C ILE* 4.0 17.9 - - + +
455C LEU* 3.6 16.8 - - + +
456C GLU* 3.8 28.9 - - + -
459C LEU* 3.8 24.7 - - + -
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Residues in contact with ARG 372 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142C ASP* 3.4 26.5 + - - +
365C ARG 5.5 0.6 + - - -
368C GLN* 3.2 34.8 + - - +
369C TYR* 3.3 29.0 + - - +
371C LEU* 1.3 80.4 - - + +
373C LYS* 1.3 66.4 + - + +
375C LYS* 3.4 8.2 + - - +
376C ASP* 3.0 38.9 + - - +
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Residues in contact with LYS 373 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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369C TYR* 3.1 62.1 + - + +
370C ASN* 4.0 4.7 - - - +
372C ARG* 1.3 81.5 - - - +
374C ALA* 1.3 65.1 + - - +
376C ASP* 3.5 17.4 + - + +
377C ARG* 3.0 24.3 + - - +
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Residues in contact with ALA 374 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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370C ASN 3.0 20.4 + - - +
371C LEU* 3.1 6.5 + - - +
373C LYS* 1.3 76.0 - - - +
375C LYS* 1.3 58.6 + - - +
377C ARG* 3.3 1.1 + - - -
378C ALA* 2.9 29.6 + - - +
448C LEU* 3.4 26.2 - - + +
451C TYR* 4.2 12.1 - - + -
452C ILE* 3.8 23.6 - - + -
455C LEU* 4.7 0.7 - - + -
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Residues in contact with LYS 375 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
371C LEU* 2.9 53.0 + - + +
372C ARG* 3.7 7.2 - - - +
374C ALA* 1.3 73.9 - - - +
376C ASP* 1.3 62.8 + - - +
378C ALA* 3.3 7.6 + - - +
379C HIS* 3.0 29.6 + - - +
452C ILE* 4.4 15.0 - - + -
456C GLU* 4.0 13.6 + - - -
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Residues in contact with ASP 376 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
372C ARG* 3.0 22.6 + - - +
373C LYS* 3.8 20.9 + - + +
374C ALA 3.3 0.2 - - - -
375C LYS* 1.3 78.1 - - - +
377C ARG* 1.3 62.1 + - - +
379C HIS* 3.5 7.3 + - - +
380C ILE* 3.2 27.5 + - + +
420C LYS* 5.4 9.7 + - - -
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Residues in contact with ARG 377 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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373C LYS 3.0 18.5 + - - +
374C ALA* 4.6 0.7 - - - -
376C ASP* 1.3 73.0 - - - +
378C ALA* 1.3 61.0 + - - +
380C ILE* 3.0 33.7 + - - +
381C LEU* 2.8 45.8 + - + +
384C LEU* 4.6 4.0 - - - +
432C ARG* 4.7 14.3 - - - +
441C ILE* 6.2 0.2 - - - +
444C GLU* 2.8 40.2 + - - +
448C LEU* 3.6 20.0 - - + -
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Residues in contact with ALA 378 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374C ALA 2.9 17.0 + - - +
375C LYS* 3.6 5.6 - - - +
377C ARG* 1.3 76.7 - - - +
379C HIS* 1.3 56.6 + - - +
381C LEU* 3.1 3.5 + - - +
382C GLU* 2.8 39.8 + - - +
445C TYR* 3.6 20.7 - - + -
448C LEU* 3.5 13.9 - - + +
449C LEU* 5.2 3.1 - - + -
452C ILE* 4.1 17.7 - - + -
----------------------------------------------------------
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Residues in contact with HIS 379 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
375C LYS 3.0 16.8 + - - +
376C ASP* 3.6 7.9 - - - +
378C ALA* 1.3 75.0 - - - +
380C ILE* 1.3 72.1 + - + +
382C GLU* 3.5 14.6 + - - +
383C GLY 3.4 4.9 + - - -
418C SER* 2.7 32.0 + - - -
420C LYS* 4.7 10.4 - - + +
421C GLN* 2.7 53.3 + - + +
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Residues in contact with ILE 380 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
376C ASP 3.2 16.4 + - - +
377C ARG* 3.0 29.9 + - - +
379C HIS* 1.3 83.0 - - + +
381C LEU* 1.3 62.5 + - - +
383C GLY* 3.1 10.7 + - - -
384C LEU* 3.2 20.3 + - + +
420C LYS* 4.0 40.6 - - + +
421C GLN* 4.5 3.9 - - - +
424C ALA* 3.8 22.0 - - + +
----------------------------------------------------------
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Residues in contact with LEU 381 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377C ARG* 2.8 44.4 + - + +
378C ALA 3.1 6.7 + - - +
380C ILE* 1.3 75.4 - - - +
382C GLU* 1.3 58.2 + - - +
384C LEU* 3.3 9.2 + - + +
385C ARG* 2.9 35.9 + - - +
441C ILE* 3.8 32.0 - - + +
444C GLU* 3.8 22.7 - - + +
445C TYR* 3.7 39.7 - - + +
448C LEU* 3.9 15.3 - - + -
----------------------------------------------------------
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Residues in contact with GLU 382 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378C ALA* 2.8 26.6 + - - +
379C HIS* 3.6 23.7 + - - +
380C ILE 3.3 0.2 - - - -
381C LEU* 1.3 72.5 - - - +
383C GLY* 1.3 61.0 + - - +
385C ARG* 3.9 15.5 + - - +
386C ILE* 3.2 31.8 + - + +
421C GLN* 4.0 7.5 + - - +
445C TYR* 2.7 36.7 + - + +
449C LEU* 5.3 1.4 - - - +
----------------------------------------------------------
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Residues in contact with GLY 383 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379C HIS 3.4 4.4 + - - -
380C ILE 3.1 8.0 + - - -
381C LEU 3.1 0.8 - - - -
382C GLU* 1.3 77.2 - - - +
384C LEU* 1.3 58.4 + - - +
386C ILE* 3.4 4.9 + - - +
387C ALA 3.0 21.5 + - - -
417C LEU* 4.6 6.7 - - - -
421C GLN* 3.7 28.7 - - - +
425C ILE* 3.5 17.5 - - - +
----------------------------------------------------------
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Residues in contact with LEU 384 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377C ARG* 4.6 3.6 - - - +
380C ILE* 3.2 23.2 + - + +
381C LEU* 3.8 21.1 - - + +
383C GLY* 1.3 73.0 - - - +
385C ARG* 1.3 59.6 + - - +
387C ALA* 3.1 7.7 + - - +
388C LEU* 2.8 35.1 + - - +
424C ALA* 3.9 37.0 - - + +
425C ILE* 4.1 8.3 - - + +
428C MET* 4.2 17.0 - - + -
432C ARG* 4.1 23.1 - - - +
441C ILE* 4.1 20.9 - - + -
----------------------------------------------------------
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Residues in contact with ARG 385 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381C LEU 2.9 21.3 + - - +
382C GLU* 3.9 14.7 + - - +
384C LEU* 1.3 73.8 - - - +
386C ILE* 1.3 64.5 + - - +
388C LEU* 3.4 9.4 + - + +
389C ASP* 3.1 32.5 + - - +
441C ILE* 4.1 16.4 - - + +
442C GLU* 3.2 28.2 + - + +
445C TYR* 3.6 56.5 + - - -
446C ASN* 5.6 0.6 + - - -
----------------------------------------------------------
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Residues in contact with ILE 386 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
382C GLU* 3.2 21.8 + - + +
383C GLY 3.6 6.7 - - - +
384C LEU 3.3 0.2 - - - -
385C ARG* 1.3 74.2 - - - +
387C ALA* 1.3 64.6 + - - +
389C ASP* 3.2 11.0 + - - +
390C HIS* 3.2 32.9 + - + +
394C ILE* 5.4 1.3 - - + -
415C PHE* 4.4 33.0 - - + +
416C LYS 5.6 2.0 - - - +
417C LEU* 3.9 22.2 - - + -
421C GLN* 5.4 4.0 - - - +
425C ILE* 6.0 0.2 - - + -
----------------------------------------------------------
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Residues in contact with ALA 387 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
383C GLY 3.0 14.7 + - - +
384C LEU* 3.1 10.3 + - - +
386C ILE* 1.3 76.9 - - - +
388C LEU* 1.3 57.2 + - - +
390C HIS 3.3 1.6 + - - -
391C ILE* 2.8 35.8 + - + +
394C ILE* 3.5 17.7 - - + +
425C ILE* 3.8 32.1 - - + -
428C MET* 4.4 11.9 - - + -
----------------------------------------------------------
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Residues in contact with LEU 388 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399A ARG* 5.2 1.7 + - - -
384C LEU 2.8 22.8 + - - +
385C ARG* 3.9 7.9 - - + +
386C ILE 3.3 0.2 - - - -
387C ALA* 1.3 74.5 - - - +
389C ASP* 1.3 63.6 - - - +
390C HIS 3.4 0.5 + - - -
391C ILE* 3.7 19.2 + - + +
428C MET* 4.8 14.1 - - + -
432C ARG 5.0 2.0 - - - +
433C LEU* 3.8 28.7 - - + -
438C ARG* 4.0 38.8 - - + +
441C ILE* 4.0 30.5 - - + -
----------------------------------------------------------
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Residues in contact with ASP 389 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
385C ARG* 3.1 19.7 + - - +
386C ILE* 3.2 12.0 + - - +
388C LEU* 1.3 76.8 - - - +
390C HIS* 1.3 79.8 + - + +
391C ILE* 3.6 0.9 - - - -
----------------------------------------------------------
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Residues in contact with HIS 390 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
386C ILE* 3.2 29.6 + - + +
387C ALA 3.3 3.1 - - - -
389C ASP* 1.3 91.9 + - + +
391C ILE* 1.3 60.1 + - - +
392C ASP* 3.2 3.4 - - - -
393C GLU* 2.9 24.5 + - + +
394C ILE* 2.8 26.1 + - + +
415C PHE* 4.0 20.9 - + + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il