Contacts of the helix formed by residues 832 - 869 (chain A) in PDB entry 5IYB
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 832 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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825A ASN* 3.6 20.4 - - - +
831A LEU* 1.3 73.8 - - - +
833A PRO* 1.3 65.9 - - + +
834A THR* 3.3 10.8 + - - -
835A GLU* 2.7 33.6 + - - +
836A PHE* 2.8 30.1 + - - +
1002B PHE* 4.1 1.3 - - - -
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Residues in contact with PRO 833 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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832A THR* 1.3 87.9 - - + +
834A THR* 1.3 62.9 + - - +
836A PHE* 3.3 2.3 + - + +
837A PHE 2.9 18.7 + - - -
506B TRP* 3.5 21.0 - - + -
677B MET* 3.8 32.5 - - + -
700B PRO* 3.6 31.0 - - + +
703B ILE* 6.0 0.8 - - + +
1002B PHE* 3.9 29.6 - - + -
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Residues in contact with THR 834 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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807A LEU* 3.8 19.5 - - + -
809A HIS* 5.0 4.5 - - + -
810A PHE* 3.4 30.3 - - + -
818A GLU* 5.0 6.9 + - - +
832A THR* 3.3 12.2 + - - -
833A PRO* 1.3 75.8 - - - +
835A GLU* 1.3 64.9 + - - +
837A PHE* 3.2 2.3 + - - +
838A PHE* 2.7 54.4 + - - -
506B TRP* 4.5 0.4 - - + -
677B MET* 4.4 18.1 - - + +
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Residues in contact with GLU 835 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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818A GLU* 6.1 1.9 - - + +
822A PHE 4.0 6.8 - - - +
823A VAL* 3.4 40.5 - - + +
824A GLU* 2.7 30.2 + - - +
825A ASN* 3.4 15.9 + - - +
831A LEU* 3.3 14.3 - - + +
832A THR* 2.7 39.0 + - - +
834A THR* 1.3 84.4 + - - +
836A PHE* 1.3 55.5 + - - +
838A PHE* 4.4 4.3 - - - +
839A HIS* 2.5 38.8 + - - +
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Residues in contact with PHE 836 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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831A LEU* 4.1 10.0 - - + +
832A THR 2.8 16.0 + - - +
833A PRO 3.7 7.9 - - - +
835A GLU* 1.3 72.1 - - - +
837A PHE* 1.3 60.8 + - - +
839A HIS* 3.4 7.3 + + + +
840A ALA* 2.9 31.2 + - + +
511B PRO* 4.2 10.5 - - + -
512B ALA* 5.3 4.0 - - + -
703B ILE* 4.0 28.9 - - + -
704B LEU* 4.2 18.6 - - + -
714B PRO* 3.9 24.9 - - + -
715B ASP* 3.9 20.9 - - + -
717B ASN 5.7 0.7 - - - -
719B SER* 5.7 1.1 - - - -
722B ASN* 3.8 29.8 - - + -
1002B PHE* 4.1 21.1 - + + -
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Residues in contact with PHE 837 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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807A LEU* 4.2 10.3 - - + -
833A PRO 2.9 7.4 + - - +
834A THR* 3.8 2.2 - - - +
836A PHE* 1.3 82.1 - - + +
838A PHE* 1.3 58.9 + + - +
840A ALA* 3.2 5.5 + - - +
841A MET* 3.1 52.9 + - + +
501B LEU* 4.0 23.1 - - + -
502B HIS 4.5 0.2 - - - -
503B ASN* 4.2 9.0 - - - -
505B LEU* 4.3 5.6 - - + -
506B TRP* 3.4 65.7 - + + -
507B GLY 5.2 0.9 - - - -
509B VAL 5.2 1.6 - - - -
511B PRO* 3.5 30.7 - - + -
703B ILE* 4.5 10.8 - - + -
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Residues in contact with PHE 838 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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791A GLN* 3.7 17.7 - - + +
798A ILE* 3.6 31.0 - - + +
806A THR* 3.2 24.0 - - - -
807A LEU* 3.4 33.7 - - + -
810A PHE* 3.9 10.5 - + - -
818A GLU 3.7 19.1 - - - -
819A SER 4.0 1.6 - - - -
821A GLY* 3.6 26.7 - - - -
822A PHE 5.5 0.9 - - - -
834A THR* 2.7 32.3 + - - +
835A GLU* 3.9 5.6 - - - +
837A PHE* 1.3 70.3 - + - +
839A HIS* 1.3 65.4 + - - +
841A MET* 3.1 22.8 + - + +
842A GLY 3.3 8.5 + - - -
503B ASN* 4.5 3.6 - - - -
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Residues in contact with HIS 839 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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788A VAL* 5.1 3.4 - - + -
791A GLN* 3.4 29.2 + - - +
823A VAL* 4.9 0.4 - - + -
827A TYR* 2.6 46.3 + + - -
831A LEU* 4.0 16.6 - - + -
835A GLU 2.5 24.3 + - - +
836A PHE* 3.6 6.3 - + + +
838A PHE* 1.3 72.1 - - - +
840A ALA* 1.3 58.0 + - - +
842A GLY* 3.3 2.6 + - - -
843A GLY* 3.0 22.8 + - - -
717B ASN 4.5 2.9 - - - -
718B GLN* 4.6 4.0 - - + -
719B SER* 3.0 37.4 + - - -
720B PRO* 5.2 0.2 - - + -
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Residues in contact with ALA 840 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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836A PHE* 2.9 18.6 + - + +
837A PHE* 3.4 13.5 - - - +
838A PHE 3.2 0.2 - - - -
839A HIS* 1.3 76.6 - - - +
841A MET* 1.3 61.8 + - - +
843A GLY* 3.5 0.5 + - - -
844A ARG* 3.2 22.5 + - - +
501B LEU* 3.8 15.8 - - + +
511B PRO* 4.4 19.2 - - + +
512B ALA* 5.2 7.0 - - + -
719B SER* 4.1 12.5 - - - -
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Residues in contact with MET 841 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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793A VAL* 4.1 20.3 - - + +
798A ILE* 4.0 28.9 - - + -
799A PRO* 4.8 3.8 - - - -
837A PHE* 3.1 38.2 + - + +
838A PHE* 3.1 13.2 + - + +
840A ALA* 1.3 77.5 - - - +
842A GLY* 1.3 61.0 + - - +
844A ARG* 3.4 10.4 + - - +
845A GLU* 3.4 9.4 + - - +
500B GLN* 6.0 1.0 - - - +
501B LEU* 3.6 31.5 + - + +
503B ASN* 3.2 55.2 - - + +
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Residues in contact with GLY 842 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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791A GLN* 4.8 9.6 - - - +
792A ASN 3.8 23.5 + - - -
793A VAL* 4.6 0.4 - - - -
838A PHE 3.3 5.9 + - - -
839A HIS* 3.3 6.9 + - - -
841A MET* 1.3 76.6 - - - +
843A GLY* 1.3 63.7 + - - +
844A ARG 3.3 0.4 + - - -
845A GLU* 3.6 11.7 + - - +
846A GLY* 3.8 5.7 + - - -
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Residues in contact with GLY 843 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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839A HIS* 3.0 13.2 + - - -
840A ALA 3.5 2.2 + - - -
842A GLY* 1.3 74.8 - - - +
844A ARG* 1.3 59.5 + - - +
846A GLY* 3.1 12.3 + - - -
847A LEU* 3.4 15.3 + - - +
719B SER* 3.4 21.0 + - - -
720B PRO* 4.2 18.0 - - - +
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Residues in contact with ARG 844 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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840A ALA 3.2 12.5 + - - +
841A MET 3.5 10.5 - - - +
842A GLY 3.3 0.2 - - - -
843A GLY* 1.3 71.5 - - - +
845A GLU* 1.3 66.3 + - - +
846A GLY 3.0 1.8 - - - -
847A LEU* 2.9 30.1 + - - +
848A ILE* 3.1 28.9 + - + +
499B ARG 3.8 15.7 + - - -
500B GLN* 4.2 16.7 + - + -
501B LEU* 4.3 19.5 - - + +
505B LEU* 5.8 1.2 - - - +
510B CYS 4.7 3.2 + - - -
511B PRO 2.8 30.9 + - - -
512B ALA* 4.5 4.6 - - - +
513B GLU 4.5 0.4 - - - +
514B THR* 3.8 34.8 + - - +
520B VAL 4.0 13.7 - - - -
521B GLY* 3.8 5.9 + - - -
723B THR* 5.3 2.6 + - - -
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Residues in contact with GLU 845 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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792A ASN* 3.6 5.9 - - - +
793A VAL* 3.2 17.4 - - + -
794A GLU* 3.2 37.8 + - - +
795A GLY 4.9 0.7 + - - -
841A MET 3.4 9.1 + - - +
842A GLY* 3.9 10.0 - - - +
843A GLY 3.4 0.6 - - - -
844A ARG* 1.3 78.0 - - - +
846A GLY* 1.3 62.5 + - - +
848A ILE* 3.6 9.1 + - + +
849A ASP* 3.3 24.8 + - + +
1105A ASN 5.5 2.8 - - - +
1106A THR* 5.5 6.8 - - - +
500B GLN* 5.2 10.7 - - - +
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Residues in contact with GLY 846 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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842A GLY 3.8 4.8 + - - -
843A GLY 3.1 9.1 + - - -
844A ARG 3.0 1.0 - - - -
845A GLU* 1.3 79.1 - - - +
847A LEU* 1.3 59.5 + - - +
849A ASP* 3.3 15.2 - - - +
850A THR* 2.8 24.4 + - - -
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Residues in contact with LEU 847 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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843A GLY 3.4 10.3 + - - +
844A ARG* 2.9 32.1 + - - +
846A GLY* 1.3 74.5 - - - +
848A ILE* 1.3 64.3 + - - +
850A THR* 3.6 8.0 + - - +
851A ALA* 3.2 22.3 + - - +
514B THR* 4.6 3.6 - - - +
515B PRO 5.7 2.5 - - - +
516B GLU* 5.4 12.6 - - - +
520B VAL* 4.1 14.8 - - + +
720B PRO* 5.0 8.1 - - + -
723B THR* 3.9 35.9 - - + +
724B TYR* 3.9 30.5 - - + +
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Residues in contact with ILE 848 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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844A ARG* 3.1 21.0 + - + +
845A GLU* 4.1 6.3 - - + +
847A LEU* 1.3 73.4 - - - +
849A ASP* 1.3 67.3 + - - +
851A ALA* 3.3 2.6 + - + +
852A VAL* 3.0 33.0 + - + +
1104A LEU* 5.9 2.5 - - + -
495B LEU* 5.7 3.6 - - + -
496B ALA 5.6 2.7 - - - +
499B ARG* 3.6 36.1 - - + +
500B GLN* 3.6 50.3 - - + +
520B VAL* 4.0 12.3 - - + -
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Residues in contact with ASP 849 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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845A GLU* 3.3 16.9 + - + +
846A GLY* 3.3 13.6 - - - +
847A LEU 3.4 0.2 - - - -
848A ILE* 1.3 80.7 - - - +
850A THR* 1.3 72.4 + - - +
852A VAL* 4.1 0.9 - - - +
853A LYS* 3.1 58.3 + - - +
1103A THR 5.3 0.2 + - - -
1104A LEU* 3.7 31.6 + - + +
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Residues in contact with THR 850 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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846A GLY 2.8 22.0 + - - -
847A LEU* 3.8 10.1 - - - +
848A ILE 3.3 0.2 - - - -
849A ASP* 1.3 86.7 + - - +
851A ALA* 1.3 60.9 + - - +
853A LYS* 3.8 7.2 + - - +
854A THR* 3.3 26.0 + - + +
724B TYR* 5.9 2.5 - - - +
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Residues in contact with ALA 851 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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847A LEU 3.2 9.9 + - - +
848A ILE* 3.3 4.2 + - + +
850A THR* 1.3 79.9 - - - +
852A VAL* 1.3 63.9 + - + +
854A THR* 3.2 17.2 + - - -
855A ALA* 4.3 2.9 + - - +
499B ARG* 5.2 2.5 - - - +
516B GLU 5.7 0.4 - - - +
517B GLY* 5.3 2.0 - - - -
518B HIS* 4.9 10.1 - - - +
520B VAL* 3.6 35.7 - - + -
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Residues in contact with VAL 852 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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848A ILE* 3.0 28.5 + - + +
849A ASP 4.2 2.0 - - - +
851A ALA* 1.3 77.4 - - + +
853A LYS* 1.3 63.9 + - - +
855A ALA* 3.1 17.6 + - - +
856A GLU* 3.5 19.9 + - + +
1104A LEU* 4.2 22.9 - - + -
493B GLY* 6.0 4.3 - - - +
495B LEU* 3.6 44.4 - - + -
499B ARG* 5.6 7.2 - - - +
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Residues in contact with LYS 853 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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849A ASP* 3.1 38.7 + - - +
850A THR* 4.2 5.6 - - - +
851A ALA 3.4 0.2 - - - -
852A VAL* 1.3 79.8 - - - +
854A THR* 1.3 56.6 + - + +
856A GLU* 3.5 3.7 + - - +
857A THR* 2.8 45.4 + - + +
1099A ALA 5.4 0.9 - - - +
1100A THR* 3.3 24.7 - - - +
1102A MET* 3.1 41.4 + - - +
1103A THR 3.2 7.9 - - - +
1104A LEU* 4.1 19.1 - - + +
1121A VAL* 5.8 4.5 - - + -
277U GLN* 5.5 5.8 - - - +
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Residues in contact with THR 854 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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850A THR* 3.3 22.7 - - + +
851A ALA* 3.2 13.8 + - - -
853A LYS* 1.3 77.3 - - + +
855A ALA* 1.3 64.1 + - - +
857A THR* 3.4 5.4 + - - -
858A GLY* 3.3 18.4 + - - -
51Y C 5.4 4.7 + - - +
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Residues in contact with ALA 855 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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851A ALA 4.9 2.2 - - - +
852A VAL* 3.1 12.4 + - - +
854A THR* 1.3 83.5 + - - +
856A GLU* 1.3 61.8 + - + +
858A GLY* 3.2 2.4 + - - -
859A TYR* 3.0 27.6 + - - +
51Y C 4.8 29.9 - - + +
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Residues in contact with GLU 856 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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852A VAL* 3.5 20.1 + - + +
853A LYS* 3.5 5.6 + - - +
855A ALA* 1.3 76.9 - - + +
857A THR* 1.3 61.6 + - + +
859A TYR* 3.3 21.2 + - - +
860A ILE* 2.8 34.5 + - - +
1104A LEU* 6.1 3.8 - - + -
1121A VAL* 4.6 20.0 - - + +
1125A LYS* 3.1 42.8 + - - +
495B LEU* 6.3 0.7 - - + -
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Residues in contact with THR 857 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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464A LEU* 5.8 1.6 - - - +
853A LYS* 2.8 33.4 + - + +
854A THR* 3.4 8.3 + - - -
856A GLU* 1.3 73.6 - - + +
858A GLY* 1.3 68.4 + - - +
860A ILE* 3.7 8.7 - - + +
861A GLN* 3.0 29.5 + - - +
1096A GLY 5.6 0.6 - - - +
1099A ALA* 3.5 28.0 - - + +
1100A THR* 3.6 29.1 - - - +
1121A VAL* 4.4 12.6 - - + -
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Residues in contact with GLY 858 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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464A LEU* 6.3 2.2 - - - -
854A THR 3.3 9.6 + - - -
855A ALA 3.2 7.0 + - - -
857A THR* 1.3 84.1 + - - +
859A TYR* 1.3 59.5 + - - +
861A GLN* 4.0 0.6 - - - +
862A ARG* 3.4 21.5 + - - +
1089B MET* 3.7 24.8 - - - +
51Y C 5.9 7.9 - - - -
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Residues in contact with TYR 859 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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855A ALA 3.0 13.2 + - - +
856A GLU* 3.6 23.6 - - - +
858A GLY* 1.3 75.9 - - - +
860A ILE* 1.3 65.7 + - + +
862A ARG* 3.3 17.0 + - + +
863A ARG* 3.2 60.2 + - + +
1125A LYS* 6.3 1.1 - - + -
1415A THR* 5.3 2.9 - - - +
1416A ARG* 5.9 0.7 + - - -
1433A GLU* 2.9 25.9 + - + -
49Y G 4.6 9.5 + - + +
50Y A 4.2 43.3 - - - +
51Y C 6.0 4.2 - - - -
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Residues in contact with ILE 860 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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856A GLU* 2.8 22.5 + - - +
857A THR* 3.7 14.6 - - + +
859A TYR* 1.3 71.3 - - + +
861A GLN* 1.3 71.5 + - + +
863A ARG* 3.5 30.3 + - - +
864A LEU* 3.3 28.9 + - + +
1096A GLY* 5.6 2.5 - - - +
1099A ALA* 4.7 9.4 - - + -
1121A VAL* 5.5 7.2 - - + -
1124A LEU* 4.3 31.4 - - + -
1125A LYS* 4.3 22.2 - - + -
1128A ILE* 4.3 20.6 - - + -
1414A ILE* 4.8 1.7 - - + +
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Residues in contact with GLN 861 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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463A THR 4.5 4.8 + - - -
464A LEU* 2.9 53.1 + - - +
857A THR 3.0 19.5 + - - +
858A GLY* 4.0 4.3 - - - +
860A ILE* 1.3 79.6 - - + +
862A ARG* 1.3 63.6 + - - +
864A LEU* 3.3 18.8 + - - +
865A ILE* 3.3 19.8 + - + +
1092A ALA 5.0 4.0 - - - +
1093A GLN* 4.0 20.4 - - - +
1096A GLY* 4.4 24.4 - - - +
1100A THR* 4.5 0.9 - - - +
1089B MET* 4.7 15.5 - - + +
1092B ASP* 5.9 1.2 + - - +
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Residues in contact with ARG 862 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
351A ARG* 3.5 24.5 - - - +
355A MET* 5.9 0.2 - - - +
858A GLY 3.4 12.7 + - - +
859A TYR* 3.3 23.2 + - + +
860A ILE 3.3 0.4 - - - -
861A GLN* 1.3 79.4 - - - +
863A ARG* 1.3 63.8 + - - +
865A ILE* 3.3 13.8 - - + +
866A LYS* 3.2 47.8 + - + +
1431A SER 3.5 21.4 + - - -
1432A PHE* 3.2 23.3 + - - -
1433A GLU* 4.9 5.7 + - - +
1088B GLU* 2.5 46.1 + - + -
1089B MET* 5.4 5.2 - - + -
50Y A 5.2 6.6 + - - -
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Residues in contact with ARG 863 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
859A TYR* 3.2 58.0 + - + +
860A ILE* 3.8 24.4 - - - +
862A ARG* 1.3 79.0 - - - +
864A LEU* 1.3 61.7 + - - +
866A LYS* 3.6 2.4 + - - +
867A SER* 3.0 26.4 + - - -
1125A LYS* 4.8 11.9 - - - +
1128A ILE* 4.8 1.4 - - - +
1129A ASN* 3.5 16.6 + - - +
1414A ILE* 3.7 36.3 + - + +
1415A THR* 2.3 43.6 + - - +
1432A PHE* 4.1 12.1 - - + -
1433A GLU* 4.4 7.2 + - - +
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Residues in contact with LEU 864 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
860A ILE* 3.3 21.7 + - + +
861A GLN* 3.3 10.4 + - - +
863A ARG* 1.3 77.2 - - - +
865A ILE* 1.3 62.7 + - - +
867A SER* 3.1 7.3 + - - -
868A MET* 3.0 26.5 + - + +
1092A ALA* 4.0 28.0 - - + +
1095A LEU* 4.5 20.2 - - + -
1096A GLY* 4.8 5.8 - - - +
1124A LEU* 5.9 6.7 - - + -
1128A ILE* 4.7 5.4 - - + -
1401A LEU* 3.6 37.9 - - + -
1414A ILE* 4.2 21.1 - - + +
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Residues in contact with ILE 865 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
861A GLN* 3.3 15.8 + - + +
862A ARG* 3.3 22.4 - - + +
864A LEU* 1.3 76.7 - - - +
866A LYS* 1.3 91.8 + - + +
868A MET* 4.5 0.7 - - - +
869A GLU* 2.9 37.9 + - + +
1089A ALA* 4.5 8.3 - - + +
1092A ALA* 3.7 22.2 - - + -
1093A GLN* 4.2 21.1 - - + +
1088B GLU* 5.7 3.4 - - + +
1091B ARG* 4.0 4.3 - - - +
1092B ASP* 3.1 40.2 - - + +
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Residues in contact with LYS 866 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
355A MET* 4.2 4.6 - - - +
862A ARG* 3.2 46.2 + - - +
863A ARG 4.0 0.2 - - - +
865A ILE* 1.3 97.4 - - + +
867A SER* 1.3 59.0 + - - +
869A GLU* 3.6 27.5 + - - +
1419A VAL* 5.2 1.7 - - - +
1428A MET* 5.0 5.5 - - - +
1431A SER* 3.4 41.0 + - - -
1432A PHE* 3.3 32.4 - - + +
1455A SER* 3.6 14.6 + - - -
1088B GLU* 5.1 1.1 - - - +
1091B ARG* 3.5 23.6 - - - +
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Residues in contact with SER 867 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
863A ARG 3.0 14.2 + - - -
864A LEU* 3.1 9.7 + - - -
866A LYS* 1.3 76.7 - - - +
868A MET* 1.3 69.0 + - - +
869A GLU* 3.3 1.2 + - - +
870A SER* 4.3 8.3 + - - -
871A VAL* 5.4 1.0 - - - +
1401A LEU* 6.2 0.2 - - - -
1404A THR* 4.5 12.2 - - - +
1414A ILE* 3.7 29.8 + - - +
1419A VAL* 4.0 29.3 - - - +
1432A PHE* 4.4 0.4 - - - -
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Residues in contact with MET 868 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
864A LEU* 3.0 17.2 + - + +
865A ILE* 4.4 0.7 - - - +
867A SER* 1.3 79.8 - - - +
869A GLU* 1.3 55.3 + - - +
870A SER 2.7 15.7 + - - -
871A VAL* 2.9 25.5 + - - +
1088A GLY* 3.2 29.2 - - - +
1091A ALA* 4.3 7.6 - - + -
1092A ALA* 3.9 13.2 - - + +
1400A LEU* 3.6 30.7 - - + -
1401A LEU* 3.6 36.3 - - + +
1404A THR* 3.2 38.6 - - - +
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Residues in contact with GLU 869 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
865A ILE* 2.9 20.7 + - + +
866A LYS* 3.6 32.4 + - - +
867A SER 3.3 0.8 - - - -
868A MET* 1.3 76.4 - - - +
870A SER* 1.3 61.7 + - - +
871A VAL 3.2 1.1 + - - +
1086A MET* 3.1 28.2 - - - +
1089A ALA* 4.6 16.3 + - + +
1428A MET* 3.2 33.4 - - - +
1454A VAL* 3.8 17.7 - - + +
1455A SER* 2.8 26.6 + - - -
1091B ARG* 3.9 10.5 + - - +
1092B ASP* 6.2 0.2 - - - +
1095B ILE* 4.8 6.6 - - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il