Contacts of the helix formed by residues 1526 - 1581 (chain G) in PDB entry 5JPQ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER1526 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1521G ILE* 1.4 67.8 - - - +
1530G GLU* 1.3 61.7 + - - +
1531G TYR 3.1 1.3 - - - -
1532G LEU* 3.1 22.5 + - - +
1534G GLN* 3.1 11.3 + - - +
1753G GLU* 5.0 16.8 - - - -
1772G ILE* 6.0 2.7 - - - +
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Residues in contact with GLU1530 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1521G ILE* 2.6 8.2 + - - +
1526G SER* 1.3 78.8 - - - +
1531G TYR* 1.4 56.2 + - - +
1534G GLN* 3.1 11.1 + - - +
1535G ILE* 2.8 28.1 + - - +
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Residues in contact with TYR1531 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1488G TRP* 3.8 29.4 - - + +
1513G ALA* 4.1 16.4 - - + -
1514G ALA* 4.6 10.5 - - + +
1521G ILE 2.6 20.0 + - - +
1530G GLU* 1.4 72.5 - - - +
1532G LEU* 1.3 55.4 + - - +
1535G ILE* 3.1 8.8 + - - +
1546G LEU* 2.9 27.9 + - - +
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Residues in contact with LEU1532 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1514G ALA* 6.2 0.6 - - - +
1526G SER* 3.1 16.9 + - - +
1531G TYR* 1.3 77.9 - - - +
1534G GLN* 1.3 63.9 + - - +
1546G LEU* 3.3 7.4 + - - +
1551G GLY* 3.2 18.7 + - - -
1772G ILE* 5.3 12.8 - - + -
----------------------------------------------------------
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Residues in contact with GLN1534 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1526G SER 3.1 8.9 + - - +
1530G GLU* 3.1 13.5 + - - +
1532G LEU* 1.3 79.8 - - - +
1535G ILE* 1.3 56.8 + - - +
1551G GLY* 3.3 2.5 + - - -
1552G ILE* 2.9 30.3 + - - +
1772G ILE* 6.1 2.2 - - - +
1799G LYS* 6.3 2.9 - - - -
----------------------------------------------------------
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Residues in contact with ILE1535 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1488G TRP* 5.1 7.6 - - + -
1530G GLU 2.8 13.6 + - - +
1531G TYR* 3.1 12.8 + - - +
1534G GLN* 1.3 76.8 - - - +
1546G LEU* 1.3 56.4 + - - +
1552G ILE* 3.1 7.2 + - - +
1553G ALA* 2.8 31.6 + - - +
----------------------------------------------------------
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Residues in contact with LEU1546 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1482G HIS* 6.1 5.4 - - + +
1488G TRP* 5.1 11.2 - - + +
1531G TYR 2.9 13.5 + - - +
1532G LEU* 3.7 9.6 - - - +
1534G GLN 3.2 0.2 - - - -
1535G ILE* 1.3 76.4 - - - +
1551G GLY* 1.3 56.2 + - - +
1553G ALA* 3.3 6.2 + - - +
1554G LEU* 2.9 28.3 + - - +
1625G LEU* 6.2 3.3 - - + +
1634G PHE* 5.7 10.1 - - + -
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Residues in contact with GLY1551 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1532G LEU 3.2 11.0 + - - -
1534G GLN* 3.8 2.7 - - - -
1546G LEU* 1.3 79.0 - - - +
1552G ILE* 1.3 61.3 + - - +
1554G LEU* 3.2 8.4 + - - +
1555G ASP* 3.0 23.9 + - - +
1813G ASP* 4.7 15.8 - - - +
----------------------------------------------------------
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Residues in contact with ILE1552 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1534G GLN 2.9 17.9 + - - +
1535G ILE* 3.1 9.4 + - - +
1551G GLY* 1.3 77.1 - - - +
1553G ALA* 1.3 57.0 + - - +
1555G ASP* 3.6 4.2 + - - +
1581G LYS* 2.8 31.6 + - - +
----------------------------------------------------------
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Residues in contact with ALA1553 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1478G TYR* 6.4 2.2 - - + -
1481G LEU* 6.2 3.8 - - + -
1482G HIS* 6.5 0.9 - - + -
1535G ILE 2.8 15.8 + - - +
1546G LEU* 3.6 6.7 - - - +
1552G ILE* 1.3 73.7 - - - +
1554G LEU* 1.3 64.8 + - - +
1581G LYS* 2.5 29.3 - - - +
1589G HIS* 3.7 4.2 + - - +
----------------------------------------------------------
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Residues in contact with LEU1554 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1546G LEU 2.9 15.0 + - - +
1551G GLY* 3.2 11.4 + - - +
1553G ALA* 1.3 78.5 - - - +
1555G ASP* 1.3 63.3 + - - +
1589G HIS* 3.5 14.7 - - - +
1620G VAL* 4.9 23.3 - - + +
1625G LEU* 5.8 5.8 - - + -
1626G SER* 5.9 6.3 - - - +
1813G ASP* 5.5 6.5 - - + -
1852G MET* 6.6 0.4 - - + -
----------------------------------------------------------
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Residues in contact with ASP1555 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1551G GLY 3.0 15.2 + - - +
1552G ILE* 4.1 3.6 - - - +
1554G LEU* 1.3 77.4 - - - +
1581G LYS* 1.3 59.4 + - - +
1589G HIS* 2.8 10.6 + - - +
1813G ASP* 5.4 6.7 - - - +
1844G LYS* 4.5 23.5 - - + +
----------------------------------------------------------
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Residues in contact with LYS1581 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1552G ILE 2.8 19.8 + - - +
1553G ALA* 2.5 19.8 - - - +
1555G ASP* 1.3 72.8 - - - +
1589G HIS* 1.3 53.9 + - - +
----------------------------------------------------------
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Residues in contact with HIS1589 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1553G ALA 3.8 3.8 - - - +
1554G LEU* 3.5 17.7 - - - +
1555G ASP 2.8 10.0 + - - +
1581G LYS* 1.3 74.9 - - - +
1594G SER* 1.3 61.5 + - - +
1595G VAL* 3.3 27.1 - - + -
1620G VAL* 5.3 1.8 - - + -
----------------------------------------------------------
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Residues in contact with SER1594 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1589G HIS* 1.3 76.0 - - - +
1595G VAL* 3.2 33.4 + - - +
1602G VAL* 4.2 4.0 + - - +
----------------------------------------------------------
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Residues in contact with VAL1595 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1478G TYR* 5.4 14.3 - - + +
1589G HIS* 3.3 25.4 - - + -
1594G SER* 3.2 28.5 + - - +
1602G VAL* 1.3 57.5 + - - +
1603G LYS 3.4 1.6 - - - -
1604G ASN* 2.8 13.1 + - - +
1620G VAL* 2.6 38.8 + - + -
----------------------------------------------------------
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Residues in contact with VAL1602 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1594G SER 4.2 3.0 + - - -
1595G VAL* 1.3 75.4 - - - +
1603G LYS* 1.3 65.8 + - - +
1620G VAL* 3.7 6.8 - - - +
1623G SER* 2.9 23.9 + - - -
1876G LEU* 6.0 7.2 - - + -
----------------------------------------------------------
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Residues in contact with LYS1603 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1595G VAL 3.1 0.6 + - - -
1602G VAL* 1.3 79.4 - - - +
1604G ASN* 1.3 62.4 + - - +
1623G SER* 3.4 5.7 + - - -
1624G SER* 3.4 17.5 + - - -
----------------------------------------------------------
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Residues in contact with ASN1604 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1478G TYR* 5.9 2.9 - - + -
1479G THR* 4.9 22.0 - - - +
1595G VAL* 2.8 10.0 + - - +
1603G LYS* 1.3 76.1 - - - +
1620G VAL* 1.3 60.0 + - - +
1624G SER* 3.2 7.0 + - - +
1625G LEU* 2.8 31.9 + - + +
----------------------------------------------------------
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Residues in contact with VAL1620 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1554G LEU* 4.9 23.5 - - + +
1589G HIS* 5.3 0.7 - - + -
1595G VAL* 2.6 33.0 + - + +
1602G VAL* 3.2 6.7 + - - +
1604G ASN* 1.3 72.2 - - - +
1623G SER* 1.3 58.3 + - - +
1625G LEU* 3.7 6.5 - - - +
1626G SER* 2.8 30.9 + - - -
1852G MET* 6.4 2.9 - - + -
----------------------------------------------------------
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Residues in contact with SER1623 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1602G VAL 2.9 16.9 + - - -
1603G LYS* 3.7 6.5 - - - -
1620G VAL* 1.3 76.3 - - - +
1624G SER* 1.3 61.9 + - - +
1626G SER* 3.2 8.5 + - - -
1627G SER* 3.2 19.2 + - - -
1852G MET* 6.6 0.2 - - - -
----------------------------------------------------------
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Residues in contact with SER1624 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1603G LYS 3.4 8.7 + - - -
1604G ASN* 3.2 9.9 + - - -
1623G SER* 1.3 79.3 - - - +
1625G LEU* 1.3 63.7 + - - +
1627G SER* 3.0 18.0 + - - -
1628G ILE* 3.1 13.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU1625 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1482G HIS* 5.0 17.0 - - + -
1546G LEU* 6.2 3.1 - - + +
1554G LEU* 5.8 5.4 - - + -
1604G ASN* 2.8 17.7 + - + +
1620G VAL* 3.7 7.0 - - - +
1624G SER* 1.3 77.6 - - - +
1626G SER* 1.3 63.0 + - - +
1628G ILE* 3.1 8.1 + - - +
1634G PHE* 3.0 23.2 + - - +
----------------------------------------------------------
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Residues in contact with SER1626 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1554G LEU* 5.9 3.6 - - - -
1620G VAL 2.8 17.5 + - - -
1623G SER* 3.5 7.6 - - - -
1624G SER 3.2 0.2 - - - -
1625G LEU* 1.3 75.1 - - - +
1627G SER* 1.3 63.3 + - - +
1634G PHE* 3.3 8.7 + - - +
1637G LEU* 3.2 21.3 + - - +
1852G MET* 5.5 10.8 - - - -
----------------------------------------------------------
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Residues in contact with SER1627 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1623G SER 3.2 8.0 + - - -
1624G SER* 3.0 13.2 + - - -
1626G SER* 1.3 78.7 - - - +
1628G ILE* 1.3 62.5 + - - +
1637G LEU* 3.2 8.1 + - - +
1638G SER* 3.1 21.1 + - - -
----------------------------------------------------------
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Residues in contact with ILE1628 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1624G SER 3.1 12.6 + - - +
1625G LEU* 3.1 9.2 + - - +
1627G SER* 1.3 75.6 - - - +
1634G PHE* 1.3 63.2 + - - +
1638G SER* 3.2 7.8 + - - -
1649G ALA* 3.1 23.7 + - - +
----------------------------------------------------------
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Residues in contact with PHE1634 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1546G LEU* 5.7 9.9 - - + -
1551G GLY* 6.5 0.7 - - - -
1625G LEU 3.0 12.3 + - - +
1626G SER* 3.5 12.3 - - - +
1628G ILE* 1.3 78.0 - - - +
1637G LEU* 1.3 61.6 + - - +
1649G ALA* 3.9 4.9 - - - +
1659G MET* 3.0 25.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU1637 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1626G SER 3.2 9.9 + - - +
1627G SER* 3.2 10.3 + - - +
1634G PHE* 1.3 80.4 - - - +
1638G SER* 1.3 62.7 + - - +
1659G MET* 3.4 6.5 + - - +
1660G ASP* 3.1 22.7 + - - +
1935G TRP* 5.7 9.9 - - + -
----------------------------------------------------------
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Residues in contact with SER1638 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1627G SER 3.1 12.6 + - - -
1628G ILE* 3.2 10.1 + - - -
1637G LEU* 1.3 75.7 - - - +
1649G ALA* 1.3 62.8 + - - +
1660G ASP* 3.1 10.8 + - - +
1684G LEU* 3.0 18.4 + - - +
----------------------------------------------------------
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Residues in contact with ALA1649 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1514G ALA* 6.4 1.8 - - + -
1628G ILE 3.1 12.5 + - - +
1634G PHE* 3.9 4.9 - - - +
1638G SER* 1.3 75.8 - - - +
1659G MET* 1.3 66.2 + - - +
1684G LEU* 2.9 10.3 + - - +
1685G ARG* 2.9 21.3 + - - +
----------------------------------------------------------
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Residues in contact with MET1659 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1634G PHE 3.0 17.8 + - - +
1637G LEU* 3.8 6.1 - - - +
1638G SER 3.3 0.2 - - - -
1649G ALA* 1.3 76.1 - - - +
1660G ASP* 1.3 57.5 + - - +
1685G ARG* 3.2 8.5 + - - +
1686G ARG* 3.0 27.0 + - - +
1807G THR* 6.3 2.9 - - - -
----------------------------------------------------------
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Residues in contact with ASP1660 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1637G LEU 3.1 12.4 + - - +
1638G SER* 3.2 12.8 - - - +
1659G MET* 1.3 75.1 - - - +
1684G LEU* 1.3 66.0 + - - +
1686G ARG* 3.3 4.6 + - - +
1687G THR* 3.0 18.9 + - - -
1940G THR* 6.0 2.5 - - - +
1941G GLY* 5.7 8.1 - - - -
1946G SER* 3.6 19.0 - - - -
----------------------------------------------------------
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Residues in contact with LEU1684 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1638G SER 3.0 10.5 + - - +
1649G ALA* 2.9 13.4 + - - +
1660G ASP* 1.3 75.9 - - - +
1685G ARG* 1.3 64.0 + - - +
1687G THR* 3.2 4.3 + - - -
1694G VAL* 3.0 27.9 + - - +
----------------------------------------------------------
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Residues in contact with ARG1685 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1649G ALA 2.9 11.6 + - - +
1659G MET* 3.5 11.2 - - - +
1684G LEU* 1.3 77.6 - - - +
1686G ARG* 1.3 64.1 + - - +
1694G VAL* 5.4 0.4 - - - -
1695G ALA* 2.9 32.5 + - + +
1720G ALA* 3.0 6.1 + - - -
----------------------------------------------------------
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Residues in contact with ARG1686 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1659G MET 3.0 16.4 + - - +
1660G ASP* 3.9 6.1 - - - +
1684G LEU 3.3 0.2 - - - -
1685G ARG* 1.3 77.0 - - - +
1687G THR* 1.3 66.1 + - - +
1720G ALA* 2.7 38.5 + - + +
1946G SER* 4.5 12.2 - - - +
1952G THR* 5.5 13.0 - - - +
----------------------------------------------------------
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Residues in contact with THR1687 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1660G ASP 3.0 12.2 + - - -
1684G LEU* 3.8 4.5 - - - -
1686G ARG* 1.3 81.5 - - - +
1694G VAL* 1.3 65.6 + - - +
1720G ALA 4.4 0.7 + - - -
1944G LYS 3.9 6.5 - - - -
1946G SER* 3.1 40.7 - - - +
----------------------------------------------------------
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Residues in contact with VAL1694 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1684G LEU 3.0 13.6 + - - +
1685G ARG* 5.4 0.2 - - - -
1687G THR* 1.3 84.5 - - - +
1695G ALA* 1.3 63.0 + - + +
1720G ALA 5.0 0.7 - - - -
----------------------------------------------------------
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Residues in contact with ALA1695 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1685G ARG* 2.9 21.0 + - + +
1694G VAL* 1.3 76.7 - - + +
1720G ALA* 1.3 68.0 + - - +
----------------------------------------------------------
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Residues in contact with ALA1720 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1685G ARG 3.0 4.2 + - - -
1686G ARG* 2.7 41.5 + - + +
1687G THR 5.5 0.4 - - - -
1694G VAL 3.5 1.5 - - - -
1695G ALA* 1.3 82.2 - - - +
1759G LEU* 6.4 2.2 - - + -
----------------------------------------------------------
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Residues in contact with SER1721 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1751G ALA* 1.3 62.5 + - - +
1752G MET* 3.2 5.4 - - - +
1753G GLU* 3.2 13.0 + - - +
1759G LEU* 2.8 31.5 + - - +
----------------------------------------------------------
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Residues in contact with ALA1751 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1721G SER* 1.3 80.9 - - - +
1752G MET* 1.3 57.3 + - - +
1759G LEU* 3.4 5.1 + - - +
1760G ASP* 2.9 31.2 + - - +
----------------------------------------------------------
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Residues in contact with MET1752 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1721G SER 3.2 3.0 - - - +
1751G ALA* 1.3 79.8 - - - +
1753G GLU* 1.3 62.7 + - - +
1760G ASP* 3.5 5.2 + - - +
1763G GLU* 3.0 23.4 + - - +
----------------------------------------------------------
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Residues in contact with GLU1753 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1526G SER* 5.0 16.8 - - - -
1721G SER* 3.2 14.9 + - - +
1752G MET* 1.3 80.3 - - - +
1759G LEU* 1.3 58.1 + - - +
1763G GLU* 3.1 8.3 + - - +
1772G ILE* 2.8 28.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU1759 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1720G ALA* 6.4 2.0 - - + -
1721G SER 2.8 17.9 + - - +
1751G ALA* 4.0 5.4 - - - +
1753G GLU* 1.3 73.1 - - - +
1760G ASP* 1.3 60.5 + - - +
1772G ILE* 3.1 7.6 + - - +
1777G GLU* 2.8 29.8 + - - +
----------------------------------------------------------
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Residues in contact with ASP1760 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1751G ALA 2.9 17.8 + - - +
1752G MET* 3.9 5.4 - - - +
1759G LEU* 1.3 76.2 - - - +
1763G GLU* 1.3 54.3 + - - +
1777G GLU* 3.6 6.3 - - - +
1778G THR* 2.7 36.1 + - - -
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Residues in contact with GLU1763 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1752G MET 3.0 16.0 + - - +
1753G GLU* 3.3 11.7 - - - +
1760G ASP* 1.3 77.5 - - - +
1772G ILE* 1.3 54.3 + - - +
1778G THR* 3.3 6.5 + - - -
1799G LYS* 2.9 28.2 + - - +
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Residues in contact with ILE1772 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1526G SER* 6.0 3.4 - - - +
1532G LEU* 5.3 13.9 - - + -
1534G GLN* 6.1 2.0 - - - +
1753G GLU 2.8 14.1 + - - +
1759G LEU* 3.1 9.8 + - - +
1763G GLU* 1.3 76.1 - - - +
1777G GLU* 1.3 52.7 + - - +
1799G LYS* 3.1 9.0 + - - +
1807G THR* 2.7 34.1 + - - -
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Residues in contact with GLU1777 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1759G LEU 2.8 15.9 + - - +
1760G ASP* 3.6 7.6 - - - +
1772G ILE* 1.3 73.1 - - - +
1778G THR* 1.3 67.7 + - - +
1807G THR* 3.1 8.6 + - - +
1811G HIS* 3.0 21.1 + - - +
1952G THR 4.8 13.2 - - - +
1955G TYR* 4.8 14.6 - - + +
1967G VAL* 4.2 7.5 - - + +
----------------------------------------------------------
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Residues in contact with THR1778 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1760G ASP 2.7 17.4 + - - -
1763G GLU* 3.8 7.2 - - - -
1777G GLU* 1.3 76.9 - - - +
1799G LYS* 1.3 63.2 + - - +
1811G HIS* 3.2 15.8 + - - +
1812G GLU* 3.4 11.3 + - - +
1967G VAL* 4.9 5.8 - - - -
----------------------------------------------------------
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Residues in contact with LYS1799 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1534G GLN* 6.3 3.1 - - + -
1763G GLU 2.9 14.5 + - - +
1772G ILE* 3.1 11.6 + - - +
1778G THR* 1.3 78.1 - - - +
1807G THR* 1.3 60.8 + - - +
1812G GLU* 3.2 8.5 + - - +
1813G ASP* 2.9 23.4 + - - +
----------------------------------------------------------
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Residues in contact with THR1807 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1772G ILE 2.7 16.9 + - - -
1777G GLU* 3.1 11.9 + - - -
1799G LYS* 1.3 74.5 - - - +
1811G HIS* 1.3 57.4 + - - +
1813G ASP* 3.0 9.4 + - - +
1829G ALA* 2.8 30.0 + - - +
----------------------------------------------------------
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Residues in contact with HIS1811 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1777G GLU 3.0 6.7 + - - -
1778G THR* 3.6 7.6 - - - +
1799G LYS 3.2 0.2 - - - -
1807G THR* 1.3 77.2 - - - +
1812G GLU* 1.3 57.5 + - - +
1829G ALA* 3.1 8.5 + - - +
1843G LEU* 2.9 28.3 + - - +
1967G VAL* 3.6 39.0 - - + +
1970G VAL* 5.8 0.2 - - - -
1984G PHE* 5.4 8.9 - - + +
----------------------------------------------------------
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Residues in contact with GLU1812 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1778G THR 3.4 7.3 + - - +
1799G LYS* 3.2 11.0 + - - +
1811G HIS* 1.3 79.1 - - - +
1813G ASP* 1.3 57.2 + - - +
1843G LEU* 3.2 7.7 + - - +
1844G LYS* 2.8 29.2 + - - +
----------------------------------------------------------
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Residues in contact with ASP1813 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1551G GLY* 4.7 22.7 - - - +
1554G LEU* 5.5 6.1 - - + -
1555G ASP* 5.4 6.2 - - + -
1799G LYS 2.9 13.6 + - - +
1807G THR* 3.0 12.8 + - - +
1812G GLU* 1.3 77.6 - - - +
1829G ALA* 1.3 57.2 + - - +
1844G LYS* 3.1 8.7 + - - +
1852G MET* 2.9 28.8 + - - +
----------------------------------------------------------
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Residues in contact with ALA1829 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1807G THR 2.8 12.9 + - - +
1811G HIS* 3.4 11.2 - - - +
1813G ASP* 1.3 77.0 - - - +
1843G LEU* 1.3 61.4 + - - +
1852G MET* 3.4 5.1 + - - +
1853G VAL* 3.0 26.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU1843 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1811G HIS 2.9 12.9 + - - +
1812G GLU* 3.5 11.2 - - - +
1829G ALA* 1.3 75.4 - - - +
1844G LYS* 1.3 64.5 + - - +
1853G VAL* 3.9 4.9 - - - +
1862G TYR* 3.2 23.4 + - - +
1984G PHE* 6.1 4.7 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il