Contacts of the helix formed by residues 2897 - 2977 (chain G) in PDB entry 5JPQ
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with HIS2897 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2489G ALA* 5.4 12.6 - - + -
2833G GLN 3.6 6.6 + - - +
2867G GLU* 1.4 71.2 - - - +
2900G TYR* 1.3 61.5 + - - +
2928G LYS 3.4 2.2 - - - -
2937G GLU* 3.0 12.3 + - + +
2938G ILE* 2.9 28.6 + - + -
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Residues in contact with TYR2900 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2833G GLN 5.1 0.4 + - - -
2867G GLU* 3.4 8.7 - - + -
2897G HIS* 1.3 72.9 - - - +
2928G LYS* 1.3 67.9 + - - +
2938G ILE* 4.6 4.5 - - - +
2942G ASN* 2.9 30.1 + - + +
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Residues in contact with LYS2928 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2867G GLU 5.4 0.2 + - - -
2897G HIS 3.2 0.8 + - - -
2900G TYR* 1.3 80.9 - - - +
2937G GLU* 1.3 64.7 + - - +
2942G ASN* 4.3 1.8 - - - +
2944G THR* 3.1 22.5 + - - -
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Residues in contact with GLU2937 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2897G HIS* 3.0 10.9 + - + +
2928G LYS* 1.3 80.2 - - - +
2938G ILE* 1.3 57.7 + - - +
2944G THR* 3.7 4.5 - - - -
2946G ALA* 2.9 28.6 + - - +
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Residues in contact with ILE2938 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2723G VAL* 5.3 13.5 - - + -
2897G HIS* 2.9 24.1 + - + +
2900G TYR* 4.1 4.5 - - - +
2937G GLU* 1.3 74.7 - - - +
2942G ASN* 1.3 60.7 + - - +
2946G ALA* 3.1 8.6 + - - +
2951G LEU* 2.8 28.5 + - - +
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Residues in contact with ASN2942 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2900G TYR* 2.9 17.9 + - + +
2928G LYS* 4.3 2.0 - - - +
2938G ILE* 1.3 74.7 - - - +
2944G THR* 1.3 63.2 + - - +
2951G LEU* 3.2 10.2 + - - +
2954G LEU* 3.0 21.3 + - - +
3198G LEU* 5.5 11.4 - - + -
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Residues in contact with THR2944 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2928G LYS 3.1 19.2 + - - -
2937G GLU* 3.7 4.9 - - - -
2942G ASN* 1.3 74.9 - - - +
2946G ALA* 1.3 65.1 + - - +
2954G LEU* 3.0 23.1 + - - +
2975G LYS* 3.2 8.0 + - - +
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Residues in contact with ALA2946 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2937G GLU 2.9 15.3 + - - +
2938G ILE* 3.4 11.2 - - - +
2944G THR* 1.3 75.2 - - - +
2951G LEU* 1.3 63.3 + - - +
2975G LYS* 3.3 7.9 + - - +
2976G HIS* 3.1 22.2 + - - +
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Residues in contact with LEU2951 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2938G ILE 2.8 12.6 + - - +
2942G ASN* 3.3 13.5 - - - +
2946G ALA* 1.3 77.2 - - - +
2954G LEU* 1.3 55.1 + - - +
2976G HIS* 3.3 7.6 + - - +
2977G LEU* 2.8 30.2 + - - +
3089G VAL* 4.9 16.7 - - + +
3126G CYS* 5.8 7.9 - - + -
3127G GLN 6.4 0.2 - - - +
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Residues in contact with LEU2954 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2942G ASN 3.0 11.7 + - - +
2944G THR* 3.0 15.3 + - - +
2951G LEU* 1.3 77.4 - - - +
2975G LYS* 1.3 58.3 + - - +
2977G LEU* 2.9 25.2 - - - +
2984G ARG* 3.7 2.9 + - - +
3201G GLU* 6.3 2.7 - - + -
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Residues in contact with LYS2975 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2944G THR 3.2 8.1 + - - +
2946G ALA* 3.8 8.7 - - - +
2954G LEU* 1.3 77.8 - - - +
2976G HIS* 1.3 62.8 + - - +
2984G ARG* 3.1 22.6 + - - +
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Residues in contact with HIS2976 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2946G ALA 3.1 14.1 + - - +
2951G LEU* 3.7 7.6 - - - +
2975G LYS* 1.3 74.1 - - - +
2977G LEU* 1.3 53.9 + - - +
2984G ARG 2.9 14.3 + - - -
2992G ASN 3.2 19.2 + - - +
3034G VAL* 4.8 12.6 - - + +
3044G ARG* 6.1 0.3 - - - -
3089G VAL* 5.2 10.0 - - + +
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Residues in contact with LEU2977 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2951G LEU 2.8 14.5 + - - +
2954G LEU* 2.9 21.3 - - - +
2976G HIS* 1.3 74.4 - - - +
2984G ARG* 1.3 58.7 + - - +
2992G ASN 3.6 1.0 + - - -
3044G ARG* 6.6 0.4 - - - +
3089G VAL* 5.1 10.1 - - + -
3205G TYR* 5.0 19.5 - - + +
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Residues in contact with ARG2984 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2954G LEU 3.7 2.3 + - - +
2975G LYS* 3.1 17.8 + - - +
2976G HIS 2.9 1.2 + - - -
2977G LEU* 1.3 80.2 - - - +
2992G ASN* 1.4 61.5 + - + +
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Residues in contact with ASN2992 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2976G HIS 3.2 9.9 + - - +
2977G LEU 3.6 2.2 + - - -
2984G ARG* 1.4 77.0 - - + +
3006G GLY* 1.4 56.1 + - - +
3007G SER 2.8 24.3 - - - +
3034G VAL* 3.4 12.7 - - - +
3044G ARG* 4.3 4.2 + - - +
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Residues in contact with GLY3006 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2992G ASN* 1.4 72.5 - - - +
3007G SER* 1.3 78.1 + - - +
3033G GLY* 4.3 0.7 - - - -
3034G VAL* 3.3 18.2 + - - +
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Residues in contact with SER3007 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2992G ASN* 2.8 15.2 - - - +
3006G GLY* 1.3 88.9 - - - +
3019G PRO* 1.3 66.4 - - - +
3033G GLY* 2.9 9.6 + - - -
3034G VAL 3.1 4.0 + - - -
3044G ARG* 3.4 3.8 + - - +
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Residues in contact with PRO3019 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3007G SER* 1.3 76.3 - - - +
3033G GLY* 1.3 64.9 + - - +
3034G VAL 3.1 0.2 - - - -
3044G ARG* 3.4 12.3 - - + +
3046G LEU* 2.9 25.8 + - - +
3214G ASP* 5.2 13.9 - - + +
3216G VAL* 6.1 4.0 - - + +
3217G VAL* 5.0 12.3 - - + +
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Residues in contact with GLY3033 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2680G GLN* 3.9 11.4 - - - +
3006G GLY 4.4 1.3 - - - -
3007G SER* 2.9 8.9 - - - -
3019G PRO* 1.3 80.4 - - - +
3034G VAL* 1.3 61.9 + - - +
3046G LEU* 3.6 5.2 + - - +
3047G ALA* 3.4 18.5 + - - +
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Residues in contact with VAL3034 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2680G GLN* 4.5 8.3 - - + +
2976G HIS* 4.8 15.3 - - + +
2992G ASN 3.4 20.6 - - - +
3006G GLY* 3.3 14.6 + - - +
3007G SER 3.1 1.0 + - - -
3019G PRO 3.1 0.4 - - - -
3033G GLY* 1.3 78.4 - - - +
3044G ARG* 1.4 52.2 + - - +
3047G ALA* 3.2 9.0 - - - +
3089G VAL* 2.8 35.1 + - - +
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Residues in contact with ARG3044 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2976G HIS 6.1 0.4 - - - -
2977G LEU* 6.6 0.2 - - - +
2992G ASN 4.3 2.9 + - - +
3007G SER 3.4 4.2 + - - +
3019G PRO* 3.0 18.6 + - + +
3034G VAL* 1.4 74.8 - - - +
3046G LEU* 1.3 66.7 + - - +
3089G VAL* 3.1 7.0 + - - +
3095G VAL* 2.9 25.2 + - - +
3217G VAL* 4.3 15.5 - - + -
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Residues in contact with LEU3046 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3019G PRO 2.9 15.0 + - - +
3033G GLY* 4.0 6.5 - - - +
3044G ARG* 1.3 77.2 - - - +
3047G ALA* 1.3 55.9 + - - +
3095G VAL* 3.5 2.5 + - - +
3112G LYS* 3.0 28.8 + - - +
3216G VAL* 5.0 8.7 - - + +
3217G VAL* 4.7 15.9 - - - +
3220G GLU* 4.1 16.7 - - + +
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Residues in contact with ALA3047 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2680G GLN* 3.4 35.2 - - + +
2710G VAL* 4.1 7.6 - - + -
2715G PRO* 3.9 10.4 - - + -
3033G GLY 3.4 12.4 + - - +
3034G VAL* 3.2 10.5 - - - +
3046G LEU* 1.3 77.5 - - - +
3089G VAL* 1.4 59.0 + - - +
3112G LYS* 3.3 7.4 + - - +
3126G CYS* 2.9 27.7 + - - +
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Residues in contact with VAL3089 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2710G VAL* 5.0 5.2 - - + -
2951G LEU* 4.9 21.8 - - + +
2976G HIS* 5.2 7.9 - - + +
2977G LEU* 5.1 12.1 - - + +
3034G VAL 2.8 19.3 + - - +
3044G ARG* 3.1 7.4 + - - +
3047G ALA* 1.4 70.4 - - - +
3095G VAL* 1.3 66.1 + - - +
3126G CYS* 3.1 6.6 + - - +
3127G GLN* 3.0 21.8 + - - +
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Residues in contact with VAL3095 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3044G ARG 2.9 16.5 + - - +
3046G LEU 3.8 0.2 - - - +
3089G VAL* 1.3 75.9 - - - +
3112G LYS* 1.3 63.2 - - - +
3127G GLN* 3.3 7.7 + - - +
3158G GLN* 3.0 23.0 + - - +
3217G VAL* 5.4 1.1 - - + +
3220G GLU* 3.7 34.5 - - + +
3221G ASN* 4.5 7.4 - - + +
3224G TRP* 4.6 8.3 - - + +
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Residues in contact with LYS3112 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2715G PRO* 4.2 15.7 - - + -
2742G VAL* 3.4 6.9 - - + +
3046G LEU 3.0 18.1 + - - +
3047G ALA* 3.6 7.2 - - - +
3089G VAL 3.2 0.4 - - - -
3095G VAL* 1.3 77.9 - - - +
3126G CYS* 1.4 60.3 + - - +
3158G GLN* 3.1 15.8 + - - +
3180G ALA* 3.1 11.8 + - - +
3220G GLU* 4.9 4.0 - - + +
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Residues in contact with CYS3126 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2710G VAL* 3.1 29.8 + - + +
2723G VAL* 4.6 6.0 - - + -
2742G VAL* 3.3 17.5 - - + +
2951G LEU* 5.8 7.0 - - + -
3047G ALA 2.9 12.8 + - - +
3089G VAL* 3.1 8.0 + - - +
3112G LYS* 1.4 72.1 - - - +
3127G GLN* 1.3 65.7 + - - +
3181G ILE* 3.2 22.7 + - - +
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Residues in contact with GLN3127 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3089G VAL 3.0 12.4 + - - +
3095G VAL* 3.7 10.3 - - - +
3112G LYS 3.3 0.2 - - - -
3126G CYS* 1.3 76.7 - - - +
3158G GLN* 1.4 52.8 + - - +
3181G ILE* 3.1 7.5 + - - +
3182G THR* 2.7 35.7 + - - -
3202G MET* 5.7 9.6 - - + -
3224G TRP* 5.5 6.1 - - + -
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Residues in contact with GLN3158 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3095G VAL 3.0 14.2 + - - +
3112G LYS* 3.1 10.4 + - - +
3127G GLN* 1.4 73.0 - - - +
3180G ALA* 1.3 66.7 + - - +
3182G THR* 3.0 7.3 + - - -
3183G ALA* 2.9 22.9 + - - +
3220G GLU 5.9 0.4 - - - +
3223G ARG* 5.3 7.2 - - + +
3224G TRP* 4.7 21.0 - - - +
3228G GLY* 6.6 0.2 - - - -
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Residues in contact with ALA3180 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2742G VAL* 2.8 40.2 - - + +
2748G GLU* 4.6 0.9 - - - -
2805G ALA* 4.1 11.9 - - + -
3112G LYS 3.1 9.7 + - - +
3158G GLN* 1.3 72.2 - - - +
3181G ILE* 1.3 61.7 + - - +
3183G ALA* 4.3 5.2 - - + +
3185G LYS* 2.7 35.2 + - - +
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Residues in contact with ILE3181 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2742G VAL* 4.4 0.4 + - - -
2788G ALA* 3.8 19.3 - - + +
3126G CYS 3.2 15.5 + - - +
3127G GLN* 3.1 12.2 + - - +
3180G ALA* 1.3 77.0 - - - +
3182G THR* 1.4 62.4 + - - +
3185G LYS* 3.6 0.5 - - - +
3186G LEU* 3.0 25.8 + - - +
3195G TRP* 6.0 4.9 - - + -
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Residues in contact with THR3182 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3127G GLN 2.7 17.2 + - - -
3158G GLN* 3.0 8.9 + - - -
3181G ILE* 1.4 74.0 - - - +
3183G ALA* 1.3 64.9 + - - +
3186G LEU* 4.2 2.1 - - - +
3192G GLY* 3.1 16.3 + - - -
3193G GLU 4.8 1.4 + - - +
3195G TRP* 5.4 11.4 - - - -
3228G GLY* 5.1 15.5 - - - -
3229G ILE* 5.7 1.8 - - - -
3232G LYS* 5.5 6.7 - - - -
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Residues in contact with ALA3183 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2805G ALA* 6.0 2.2 - - + -
3158G GLN 2.9 15.4 + - - +
3180G ALA* 4.1 5.6 - - + +
3182G THR* 1.3 75.9 - - - +
3185G LYS* 1.3 65.8 + - - +
3186G LEU 3.2 0.5 - - - -
3192G GLY* 2.8 15.4 + - - -
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Residues in contact with LYS3185 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2788G ALA* 2.7 36.8 - - + +
2805G ALA* 2.9 21.4 - - - +
2819G GLU* 3.5 18.4 - - - +
3180G ALA 2.7 25.2 + - - +
3181G ILE 3.6 3.1 - - - +
3183G ALA* 1.3 73.2 - - - +
3186G LEU* 1.3 67.9 + - - +
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Residues in contact with LEU3186 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2819G GLU* 4.6 15.6 - - - +
3181G ILE 3.0 13.5 + - - +
3182G THR* 4.2 1.6 - - - +
3183G ALA 3.2 1.5 - - - +
3185G LYS* 1.3 89.2 - - - +
3192G GLY* 1.3 62.5 + - - +
3193G GLU* 2.6 45.8 + - + +
3194G ASP 4.1 0.9 - - - +
3195G TRP* 6.1 2.5 - - + -
----------------------------------------------------------
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Residues in contact with GLY3192 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3182G THR 3.1 8.5 + - - -
3183G ALA* 2.8 13.0 + - - -
3186G LEU* 1.3 80.4 - - - +
3193G GLU* 1.4 56.3 + - - +
3232G LYS* 6.2 4.3 - - - -
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Residues in contact with GLU3193 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2819G GLU* 5.6 0.9 - - + +
2824G SER* 5.5 10.8 - - - -
3182G THR 5.1 1.2 - - - +
3186G LEU* 2.9 28.6 - - + +
3192G GLY* 1.4 81.9 + - - +
3194G ASP* 1.4 68.2 + - + +
3195G TRP* 5.0 0.7 - - - +
----------------------------------------------------------
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Residues in contact with ASP3194 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3186G LEU* 4.1 1.4 - - - +
3193G GLU* 1.4 78.2 - - - +
3195G TRP* 1.4 61.2 + - - +
3196G LEU* 2.9 19.9 + - - +
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Residues in contact with TRP3195 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3181G ILE* 5.9 5.2 - - + +
3182G THR* 5.4 14.4 - - - -
3193G GLU 5.0 1.1 - - - +
3194G ASP* 1.4 77.4 - - - +
3196G LEU* 1.3 64.5 + - - +
3197G HIS* 3.1 4.6 + - - -
3198G LEU* 3.1 23.2 + - + +
3199G LEU* 3.8 3.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU3196 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3194G ASP* 2.9 10.1 + - - +
3195G TRP* 1.3 76.3 - - - +
3197G HIS* 1.3 64.1 + - - +
3199G LEU* 3.0 22.9 + - - +
3233G LEU* 6.4 1.3 - - + -
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Residues in contact with HIS3197 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3195G TRP 3.1 0.6 + - - -
3196G LEU* 1.3 77.8 - - - +
3198G LEU* 1.3 60.7 + - - +
3199G LEU 3.4 0.7 + - - -
3200G PRO* 4.0 10.9 - - - +
3201G GLU 4.8 0.7 + - - -
----------------------------------------------------------
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Residues in contact with LEU3198 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2942G ASN* 5.5 11.2 - - + -
3195G TRP* 3.1 15.0 + - + +
3197G HIS* 1.3 75.8 - - + +
3199G LEU* 1.3 64.8 + - - +
3200G PRO 3.2 2.2 - - - -
3201G GLU* 2.8 22.1 + - + +
3202G MET* 3.0 13.6 + - + +
----------------------------------------------------------
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Residues in contact with LEU3199 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3195G TRP 3.8 3.0 + - - +
3196G LEU* 3.0 18.7 + - - +
3198G LEU* 1.3 76.3 - - - +
3200G PRO* 1.3 62.2 - - - +
3202G MET* 3.2 6.8 + - - +
3203G LEU* 3.0 26.3 + - - +
3229G ILE* 6.1 5.2 - - + -
3233G LEU* 5.6 8.1 - - + -
3236G SER* 5.6 10.5 - - - -
3239G SER* 5.9 1.3 - - - -
----------------------------------------------------------
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Residues in contact with PRO3200 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3196G LEU 4.6 0.2 - - - -
3197G HIS 4.0 9.2 - - - +
3198G LEU 3.2 0.6 - - - -
3199G LEU* 1.3 79.3 - - - +
3201G GLU* 1.3 60.5 + - - +
3203G LEU* 4.1 3.7 - - + +
3204G PRO* 3.5 20.3 - - - +
3239G SER* 5.5 10.3 - - - -
----------------------------------------------------------
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Residues in contact with GLU3201 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2954G LEU* 6.3 2.9 - - + -
3197G HIS 4.8 1.2 + - - +
3198G LEU* 2.8 19.2 + - + +
3200G PRO* 1.3 71.5 - - - +
3202G MET* 1.3 57.2 + - - +
3204G PRO* 3.3 5.0 - - - +
3205G TYR* 2.7 33.2 + - - +
----------------------------------------------------------
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Residues in contact with MET3202 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3127G GLN* 5.7 9.6 - - + -
3198G LEU* 3.0 13.9 + - + +
3199G LEU* 3.7 9.9 - - - +
3201G GLU* 1.3 77.1 - - - +
3203G LEU* 1.3 63.8 + - - +
3205G TYR* 2.9 18.4 + - - +
3206G ILE* 2.9 13.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU3203 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3199G LEU 3.0 15.7 + - - +
3200G PRO* 4.8 2.0 - - + +
3202G MET* 1.3 75.5 - - - +
3204G PRO* 1.3 58.6 - - - +
3206G ILE* 2.9 10.6 + - + +
3207G SER* 2.7 26.2 + - - -
3239G SER* 4.9 21.5 - - - +
3240G MET* 5.6 3.8 - - - +
----------------------------------------------------------
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Residues in contact with PRO3204 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3200G PRO 3.5 18.3 - - - +
3201G GLU* 3.3 5.5 - - - +
3202G MET 3.3 0.6 - - - -
3203G LEU* 1.3 76.9 - - - +
3205G TYR* 1.3 63.9 + - - +
3207G SER* 3.6 10.4 - - - -
3208G GLU* 3.2 20.8 + - - +
----------------------------------------------------------
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Residues in contact with TYR3205 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
2977G LEU* 5.0 20.0 - - + +
3201G GLU 2.7 17.4 + - - +
3202G MET* 2.9 14.8 + - - +
3204G PRO* 1.3 72.3 - - - +
3206G ILE* 1.3 63.2 + - - +
3208G GLU* 3.3 8.0 + - - +
3209G LEU* 3.2 18.9 + - - +
----------------------------------------------------------
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Residues in contact with ILE3206 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3202G MET 2.9 11.2 + - - +
3203G LEU* 2.9 12.8 + - - +
3205G TYR* 1.3 78.7 - - - +
3207G SER* 1.3 62.9 + - - +
3209G LEU* 3.0 11.0 + - - +
3210G GLN* 2.9 20.3 + - - +
3221G ASN* 4.8 18.4 - - + +
----------------------------------------------------------
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Residues in contact with SER3207 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3203G LEU 2.7 16.7 + - - -
3204G PRO* 3.6 13.9 - - - -
3205G TYR 3.2 0.2 - - - -
3206G ILE* 1.3 72.6 - - - +
3208G GLU* 1.3 57.2 + - - +
3210G GLN* 2.9 27.5 + - - +
3211G ASP* 3.5 5.4 + - - +
----------------------------------------------------------
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Residues in contact with GLU3208 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3204G PRO 3.2 9.6 + - - +
3205G TYR* 3.7 9.4 - - - +
3206G ILE 3.3 0.2 - - - -
3207G SER* 1.3 75.5 - - - +
3209G LEU* 1.3 68.5 + - - +
3211G ASP* 3.2 15.2 + - - +
3212G ASP* 3.5 9.2 + - - +
----------------------------------------------------------
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Residues in contact with LEU3209 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3205G TYR 3.2 9.4 + - - +
3206G ILE* 3.0 14.9 + - - +
3208G GLU* 1.3 78.9 - - - +
3210G GLN* 1.3 64.6 + - - +
3212G ASP* 2.9 25.6 + - - +
3213G ASP 4.0 2.3 + - - -
3217G VAL* 5.9 7.2 - - + -
----------------------------------------------------------
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Residues in contact with GLN3210 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3206G ILE 2.9 10.6 + - - +
3207G SER* 2.9 18.6 + - - +
3209G LEU* 1.3 77.3 - - - +
3211G ASP* 1.3 59.5 + - - +
3212G ASP 3.3 0.2 + - - -
3213G ASP* 4.0 6.4 + - - -
----------------------------------------------------------
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Residues in contact with ASP3211 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3207G SER 3.5 4.7 + - - +
3208G GLU* 3.2 9.9 + - - +
3209G LEU 3.2 0.6 - - - -
3210G GLN* 1.3 79.3 - - - +
3212G ASP* 1.3 61.2 + - - +
3213G ASP* 3.5 5.1 + - - +
----------------------------------------------------------
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Residues in contact with ASP3212 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3208G GLU 3.5 6.3 + - - +
3209G LEU* 2.9 21.8 + - - +
3211G ASP* 1.3 73.7 - - - +
3213G ASP* 1.3 70.3 + - - +
3214G ASP* 4.7 10.1 - - + +
----------------------------------------------------------
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Residues in contact with ASP3213 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3209G LEU 4.0 1.8 + - - -
3210G GLN 4.0 7.1 + - - -
3211G ASP 3.5 6.8 + - - +
3212G ASP* 1.3 80.2 - - - +
3214G ASP* 1.4 60.1 + - - +
----------------------------------------------------------
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Residues in contact with ASP3214 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3019G PRO* 5.2 13.5 - - + +
3209G LEU 5.6 0.2 + - - -
3212G ASP* 3.7 8.8 - - + +
3213G ASP* 1.4 75.3 - - - +
3215G GLU* 1.4 53.2 + - - +
3216G VAL 4.5 1.0 + - - -
3217G VAL* 4.8 10.0 - - - +
3218G GLU 5.3 0.5 + - - -
----------------------------------------------------------
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Residues in contact with GLU3215 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3214G ASP* 1.4 60.8 - - - +
3216G VAL* 1.4 55.6 + - - +
3217G VAL 3.1 3.4 - - - -
3218G GLU* 2.6 41.1 + - + +
3219G ARG 3.7 1.4 + - - -
----------------------------------------------------------
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Residues in contact with VAL3216 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3019G PRO* 6.1 4.1 - - + +
3046G LEU* 5.0 10.8 - - + +
3214G ASP 4.5 0.2 - - - -
3215G GLU* 1.4 73.5 - - - +
3217G VAL* 1.3 61.9 + - - +
3218G GLU 3.3 0.3 + - - -
3219G ARG* 3.4 15.5 + - - +
3220G GLU* 3.6 9.7 + - - +
----------------------------------------------------------
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Residues in contact with VAL3217 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3019G PRO* 5.0 10.5 - - + +
3044G ARG* 4.3 24.5 - - + +
3046G LEU* 4.7 9.1 - - - +
3095G VAL* 5.4 0.3 - - - +
3209G LEU* 5.9 7.0 - - + -
3214G ASP 4.8 10.3 + - - +
3215G GLU 3.1 0.4 - - - -
3216G VAL* 1.3 79.8 - - - +
3218G GLU* 1.3 52.6 + - - +
3220G GLU* 3.1 8.6 + - - +
3221G ASN* 2.6 38.4 + - + +
----------------------------------------------------------
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Residues in contact with GLU3218 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3214G ASP 5.3 0.6 + - - -
3215G GLU* 2.6 28.8 + - + +
3217G VAL* 1.3 71.7 - - - +
3219G ARG* 1.3 62.0 + - - +
3221G ASN* 3.3 5.8 + - - +
3222G ARG* 2.9 24.8 + - - +
----------------------------------------------------------
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Residues in contact with ARG3219 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3215G GLU 3.7 1.8 + - - +
3216G VAL* 3.4 11.5 + - - +
3217G VAL 3.2 0.6 - - - -
3218G GLU* 1.3 79.5 - - - +
3220G GLU* 1.3 62.3 + - - +
3222G ARG* 3.1 8.2 + - - +
3223G ARG* 3.0 21.8 + - - +
----------------------------------------------------------
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Residues in contact with GLU3220 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3046G LEU* 4.1 14.8 - - + +
3095G VAL* 3.7 23.0 - - + +
3112G LYS* 4.9 4.3 - - + +
3158G GLN* 5.9 0.7 - - - +
3216G VAL 3.6 6.7 + - - +
3217G VAL* 3.1 13.5 + - - +
3219G ARG* 1.3 78.4 - - - +
3221G ASN* 1.3 63.2 + - - +
3223G ARG* 3.2 9.1 + - - +
3224G TRP* 3.1 22.0 + - - +
----------------------------------------------------------
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Residues in contact with ASN3221 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3095G VAL* 4.5 7.1 - - + +
3206G ILE* 4.8 20.3 - - + +
3209G LEU* 5.7 6.7 - - + -
3217G VAL* 2.6 23.0 + - + +
3218G GLU* 4.0 5.4 - - - +
3220G GLU* 1.3 74.2 - - - +
3222G ARG* 1.3 62.2 + - - +
3224G TRP* 3.4 7.6 + - - +
3225G ILE* 3.1 22.0 + - - +
----------------------------------------------------------
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Residues in contact with ARG3222 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3218G GLU 2.9 16.9 + - - +
3219G ARG* 3.1 7.2 + - - +
3221G ASN* 1.3 74.7 - - - +
3223G ARG* 1.3 64.7 + - - +
3225G ILE* 3.2 7.4 + - - +
3226G VAL* 3.1 22.2 + - - +
----------------------------------------------------------
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Residues in contact with ARG3223 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3158G GLN* 5.3 8.3 - - + +
3219G ARG 3.0 13.6 + - - +
3220G GLU* 3.5 11.4 - - - +
3222G ARG* 1.3 78.6 - - - +
3224G TRP* 1.3 60.4 + - - +
3226G VAL* 3.5 6.0 + - - +
3228G GLY* 3.2 18.2 + - - -
----------------------------------------------------------
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Residues in contact with TRP3224 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3095G VAL* 4.6 17.7 - - + +
3127G GLN* 5.5 5.2 - - + -
3158G GLN* 4.7 14.5 - - + +
3220G GLU 3.1 12.5 + - - +
3221G ASN* 3.7 9.9 - - - +
3222G ARG 3.2 0.2 - - - -
3223G ARG* 1.3 75.4 - - - +
3225G ILE* 1.3 59.9 + - - +
3228G GLY* 3.0 3.1 + - - -
3229G ILE* 2.8 28.6 + - - +
----------------------------------------------------------
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Residues in contact with ILE3225 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1480 ALA* 4.1 7.3 - - - +
1490 LYS* 5.0 12.1 - - - +
3221G ASN 3.1 16.3 + - - +
3222G ARG* 3.2 7.1 + - - +
3224G TRP* 1.3 76.0 - - - +
3226G VAL* 1.3 62.8 + - - +
3229G ILE* 3.3 8.7 + - - +
3230G GLU* 3.1 20.6 + - - +
----------------------------------------------------------
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Residues in contact with VAL3226 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1480 ALA* 4.8 3.4 - - - -
1490 LYS* 5.4 6.0 - - + +
3222G ARG 3.1 12.7 + - - +
3223G ARG* 3.9 9.2 - - - +
3224G TRP 3.2 0.2 - - - -
3225G ILE* 1.3 76.3 - - - +
3228G GLY* 1.3 62.6 + - - +
3230G GLU* 3.2 16.9 + - - +
3231G GLU* 3.3 12.6 + - - +
----------------------------------------------------------
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Residues in contact with GLY3228 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3158G GLN* 6.6 0.2 - - - -
3182G THR* 5.1 11.8 - - - -
3223G ARG 3.2 10.7 + - - -
3224G TRP* 3.0 8.5 + - - -
3226G VAL* 1.3 74.4 - - - +
3229G ILE* 1.3 63.6 + - - +
3231G GLU* 3.4 8.0 + - - +
3232G LYS* 3.2 22.0 + - - +
----------------------------------------------------------
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Residues in contact with ILE3229 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1480 ALA* 6.1 0.2 - - - -
3182G THR* 5.7 2.9 - - - -
3199G LEU* 6.1 5.2 - - + -
3224G TRP 2.8 12.3 + - - +
3225G ILE* 3.5 11.9 - - - +
3226G VAL 3.2 0.2 - - - -
3228G GLY* 1.3 72.7 - - - +
3230G GLU* 1.3 58.5 + - - +
3232G LYS* 4.5 2.9 - - - +
3233G LEU* 2.7 40.9 + - + +
3236G SER* 4.7 15.3 - - - -
----------------------------------------------------------
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Residues in contact with GLU3230 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
510 ARG* 4.2 6.5 - - - +
1450 ASN 3.9 1.7 - - - +
1460 PHE* 4.6 4.1 - - + -
1470 VAL* 2.1 33.6 + - - +
1480 ALA* 2.2 29.4 - - + -
3225G ILE 3.1 3.0 + - - -
3226G VAL* 3.4 9.6 - - - +
3229G ILE* 1.3 79.5 - - - +
3231G GLU* 1.3 63.6 + - - +
3234G GLY* 2.9 23.6 + - - +
----------------------------------------------------------
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Residues in contact with GLU3231 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1450 ASN 5.1 1.6 - - - +
3226G VAL 3.3 8.6 + - - +
3228G GLY* 3.7 8.7 - - - +
3229G ILE 3.2 0.6 - - - -
3230G GLU* 1.3 81.7 - - - +
3232G LYS* 1.3 65.0 + - - +
3234G GLY 4.7 0.5 + - - -
----------------------------------------------------------
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Residues in contact with LYS3232 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1450 ASN 5.0 0.9 - - - +
3182G THR* 5.4 13.9 - - - +
3192G GLY* 6.2 3.4 - - - -
3228G GLY 3.2 13.7 + - - +
3229G ILE* 4.0 2.9 - - - +
3231G GLU* 1.3 85.2 - - - +
3233G LEU* 1.4 62.1 + - + +
----------------------------------------------------------
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Residues in contact with LEU3233 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1440 LYS 3.7 2.8 - - - +
1450 ASN* 3.5 8.4 - - - +
3196G LEU* 6.4 2.2 - - + -
3199G LEU* 5.6 7.9 - - + -
3229G ILE* 2.7 20.8 + - + +
3232G LYS* 1.4 75.7 - - + +
3234G GLY* 1.3 58.1 + - - +
3235G GLU* 3.1 8.1 + - - +
3236G SER* 4.3 20.2 - - - +
----------------------------------------------------------
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Residues in contact with GLY3234 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1450 ASN 2.0 36.7 + - - -
1460 PHE* 2.3 12.8 - - - -
1470 VAL* 1.6 51.2 + - - +
3229G ILE 3.7 1.2 + - - -
3230G GLU 2.9 13.2 + - - -
3233G LEU* 1.3 68.4 - - - +
3235G GLU 1.4 43.5 - - - -
----------------------------------------------------------
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Residues in contact with GLU3235 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1430 LEU 3.9 1.6 - - - +
1440 LYS* 1.9 46.3 + - + +
1460 PHE 3.0 4.7 - - - -
1470 VAL* 1.4 32.2 - - - +
3233G LEU 3.1 6.8 + - - +
3234G GLY* 1.4 59.3 - - - -
3236G SER* 1.4 48.8 + - - +
3237G LEU* 2.6 10.0 + - - +
3238G ASP* 2.9 22.2 + - + +
----------------------------------------------------------
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Residues in contact with SER3236 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1470 VAL* 1.6 44.8 - - - +
3199G LEU* 5.6 8.3 - - - -
3229G ILE* 4.7 15.9 - - - -
3233G LEU* 4.3 19.8 - - - +
3234G GLY 3.1 0.6 - - - +
3235G GLU* 1.4 65.6 - - - +
3237G LEU* 1.3 58.7 + - - -
3238G ASP 3.2 0.9 - - - -
3239G SER* 3.2 13.4 + - - +
3240G MET* 3.1 18.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU3237 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
760 ASN* 5.8 3.6 - - - +
780 GLN* 6.1 2.9 - - - +
1460 PHE* 4.2 13.0 - - + +
1470 VAL* 1.7 45.8 - - + +
1480 ALA 4.2 9.0 - - - +
3235G GLU 2.6 0.4 + - - +
3236G SER 1.3 66.5 - - - -
3238G ASP* 1.3 54.8 + - - +
3240G MET* 2.9 9.1 + - - +
3241G LEU* 2.8 31.5 + - - +
----------------------------------------------------------
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Residues in contact with ASP3238 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
780 GLN* 5.6 8.9 - - - +
3235G GLU* 2.9 14.2 + - + +
3237G LEU* 1.3 79.5 - - - +
3239G SER* 1.3 61.6 + - - +
3241G LEU* 3.4 19.1 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il