Contacts of the helix formed by residues 759 - 837 (chain C) in PDB entry 5LXN
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLN 759 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
758C THR* 1.3 74.9 - - + +
760C GLU* 1.3 60.9 + - - +
761C GLY 3.0 1.8 - - - -
762C GLN* 2.9 35.6 + - - +
763C ARG* 2.9 26.9 + - - +
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Residues in contact with GLU 760 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
758C THR* 3.4 28.4 + - + +
759C GLN* 1.3 78.2 - - - +
761C GLY* 1.3 60.6 + - - +
763C ARG* 3.2 16.0 + - - +
764C TYR* 2.9 30.1 + - + +
761D GLY* 5.1 5.0 + - - -
903D SO4 4.0 32.9 + - - -
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Residues in contact with GLY 761 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
758C THR* 3.4 16.0 + - - -
759C GLN 3.0 1.0 - - - -
760C GLU* 1.3 84.7 - - - +
762C GLN* 1.3 49.1 + - - +
764C TYR* 3.2 14.7 + - - +
765C GLN* 2.8 26.6 + - - +
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Residues in contact with GLN 762 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
758C THR 3.7 12.3 + - - +
759C GLN* 2.9 36.1 + - + +
761C GLY* 1.3 71.4 - - - +
763C ARG* 1.3 56.8 + - - +
765C GLN* 2.8 36.0 + - - +
766C ALA* 3.4 10.2 - - - +
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Residues in contact with ARG 763 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
759C GLN 2.9 13.6 + - - +
760C GLU* 3.8 12.8 - - - +
761C GLY 3.1 0.2 - - - -
762C GLN* 1.3 78.7 - - - +
764C TYR* 1.3 64.4 + - - +
765C GLN 3.6 0.2 - - - -
766C ALA* 3.7 5.5 - - - +
767C LEU 3.4 16.8 + - - -
760D GLU* 1.6 54.3 + - - +
764D TYR* 3.6 36.5 + - + +
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Residues in contact with TYR 764 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
760C GLU* 2.9 17.4 + - + +
761C GLY* 3.2 9.4 + - - +
763C ARG* 1.3 79.2 - - - +
765C GLN* 1.3 63.1 + - + +
767C LEU* 3.6 3.6 + - - +
768C LYS* 3.1 38.1 + - + +
763D ARG* 4.1 33.4 - - + +
764D TYR* 4.5 23.1 - + + -
767D LEU* 4.2 30.7 - - + +
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Residues in contact with GLN 765 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
761C GLY 2.8 19.0 + - - +
762C GLN* 2.8 31.0 + - - +
764C TYR* 1.3 78.5 - - + +
766C ALA* 1.3 65.0 + - - +
768C LYS* 3.5 25.5 - - + +
769C ALA* 2.6 38.5 + - + +
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Residues in contact with ALA 766 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
762C GLN 3.4 18.2 - - - +
763C ARG* 3.7 8.3 - - - +
764C TYR 3.2 0.6 - - - -
765C GLN* 1.3 83.4 + - - +
767C LEU* 1.3 60.4 + - - +
769C ALA* 3.2 6.4 + - - +
770C HIS* 2.9 28.9 + - - +
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Residues in contact with LEU 767 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
763C ARG 3.4 2.0 + - - +
764C TYR* 3.8 4.5 - - + +
766C ALA* 1.3 78.3 - - - +
768C LYS* 1.3 61.5 - - - +
770C HIS* 3.0 12.5 + - + +
771C ALA* 3.0 31.8 + - + +
764D TYR* 3.4 67.8 - - + +
767D LEU* 3.5 21.1 - - + -
768D LYS* 4.0 27.1 - - + +
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Residues in contact with LYS 768 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
764C TYR* 3.1 34.3 + - + +
765C GLN* 3.6 21.5 - - - +
766C ALA 3.3 0.2 - - - -
767C LEU* 1.3 76.7 - - - +
769C ALA* 1.3 58.7 + - - +
771C ALA* 4.6 2.3 - - - +
772C GLU* 3.1 40.0 + - - +
767D LEU* 3.7 26.9 - - + -
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Residues in contact with ALA 769 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
765C GLN* 2.6 23.5 + - + +
766C ALA* 3.5 7.0 - - - +
768C LYS* 1.3 76.2 - - - +
770C HIS* 1.3 63.4 + - - +
772C GLU* 3.7 9.9 - - - +
773C GLU* 3.1 23.7 + - - +
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Residues in contact with HIS 770 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
766C ALA 2.9 13.4 + - - +
767C LEU* 3.0 16.6 + - + +
769C ALA* 1.3 74.3 - - - +
771C ALA* 1.3 70.2 + - + +
773C GLU* 3.2 8.2 + - - +
774C LYS* 3.1 45.8 + - + +
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Residues in contact with ALA 771 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
767C LEU* 3.0 21.6 + - + +
768C LYS* 4.6 3.4 - - - +
770C HIS* 1.3 84.2 - - + +
772C GLU* 1.3 57.1 + - - +
774C LYS* 3.8 4.5 - - - +
775C LEU* 2.9 31.4 + - - +
767D LEU* 5.9 1.1 - - + -
771D ALA* 3.5 33.1 - - + +
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Residues in contact with GLU 772 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
768C LYS* 3.1 32.9 + - - +
769C ALA* 3.7 9.8 - - - +
770C HIS 3.1 0.4 - - - -
771C ALA* 1.3 78.4 - - - +
773C GLU* 1.3 63.3 + - - +
775C LEU* 4.0 8.4 - - + +
776C GLN* 3.1 32.4 + - - +
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Residues in contact with GLU 773 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
769C ALA 3.1 13.4 + - - +
770C HIS* 3.5 10.3 - - - +
772C GLU* 1.3 77.7 - - - +
774C LYS* 1.3 57.3 + - - +
776C GLN* 3.4 10.8 + - - +
777C LEU* 3.0 59.9 + - + +
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Residues in contact with LYS 774 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
770C HIS* 3.1 38.6 + - + +
771C ALA* 4.1 6.1 - - - +
773C GLU* 1.3 75.9 - - + +
775C LEU* 1.3 64.7 + - - +
777C LEU* 3.7 14.1 + - + +
778C ALA* 3.3 21.3 + - - +
775D LEU* 3.6 34.6 - - + +
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Residues in contact with LEU 775 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
771C ALA 2.9 19.6 + - - +
772C GLU* 4.0 8.5 - - + +
774C LYS* 1.3 77.3 - - - +
776C GLN* 1.3 56.5 + - - +
778C ALA* 3.3 4.0 + - - +
779C ASN* 2.7 50.0 + - - +
771D ALA 5.4 1.6 - - - +
774D LYS* 3.7 55.9 - - + +
775D LEU* 4.2 20.6 - - + +
778D ALA* 4.5 9.2 - - + -
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Residues in contact with GLN 776 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
772C GLU* 3.1 24.3 + - + +
773C GLU* 3.7 11.7 - - - +
774C LYS 3.3 0.2 - - - -
775C LEU* 1.3 76.2 - - - +
777C LEU* 1.3 55.4 + - + +
779C ASN* 3.2 7.2 + - + +
780C GLU* 2.8 45.3 + - + +
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Residues in contact with LEU 777 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
773C GLU* 3.0 51.8 + - + +
774C LYS* 4.0 15.7 - - + +
776C GLN* 1.3 76.0 - - + +
778C ALA* 1.3 57.2 + - - +
780C GLU* 3.4 25.6 + - - +
781C GLU* 2.9 27.8 + - - +
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Residues in contact with ALA 778 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
774C LYS 3.3 11.6 + - - +
775C LEU 3.3 8.9 + - - +
776C GLN 3.2 0.4 - - - -
777C LEU* 1.3 79.4 - - - +
779C ASN* 1.3 58.0 + - - +
781C GLU* 3.0 16.2 + - - +
782C ILE* 3.0 32.4 + - + +
775D LEU* 4.2 15.9 - - + -
778D ALA* 4.8 12.8 - - + +
779D ASN* 4.4 12.1 - - - +
782D ILE* 5.5 0.3 - - - +
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Residues in contact with ASN 779 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
775C LEU* 2.7 46.7 + - - +
776C GLN* 3.8 7.1 - - + +
778C ALA* 1.3 76.6 - - - +
780C GLU* 1.3 60.3 + - - +
782C ILE* 3.6 21.6 - - - +
783C ALA* 3.3 22.2 + - - +
778D ALA* 4.5 8.9 - - - +
781D GLU* 5.1 4.0 + - - -
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Residues in contact with GLU 780 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
776C GLN* 2.8 24.4 + - + +
777C LEU* 3.7 27.3 - - - +
779C ASN* 1.3 75.1 - - - +
781C GLU* 1.3 65.1 + - - +
783C ALA* 3.8 7.3 + - - +
784C GLN* 3.4 42.5 + - + +
----------------------------------------------------------
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Residues in contact with GLU 781 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
777C LEU 2.9 14.1 + - - +
778C ALA* 3.2 16.9 - - - +
780C GLU* 1.3 77.1 - - - +
782C ILE* 1.3 64.0 + - - +
784C GLN* 3.5 11.8 + - - +
785C VAL* 3.1 27.6 + - + +
779D ASN* 5.6 1.6 - - - +
782D ILE* 4.4 13.4 - - + +
786D ARG* 2.5 34.0 + - - +
----------------------------------------------------------
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Residues in contact with ILE 782 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
778C ALA* 3.0 19.0 + - + +
779C ASN* 3.5 30.3 + - - +
780C GLU 3.4 0.2 - - - -
781C GLU* 1.3 73.1 - - - +
783C ALA* 1.3 65.6 + - - +
785C VAL* 3.4 1.7 + - - +
786C ARG* 3.0 59.1 + - + +
778D ALA* 3.9 21.1 - - + +
781D GLU* 4.5 10.3 - - - +
782D ILE* 3.5 34.5 - - + +
785D VAL* 4.3 7.2 - - + -
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Residues in contact with ALA 783 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
779C ASN 3.3 14.8 + - - +
780C GLU* 3.9 8.5 - - - +
782C ILE* 1.3 79.5 - - - +
784C GLN* 1.3 52.0 - - + +
786C ARG* 3.2 8.3 + - - +
787C SER* 2.8 35.3 + - - -
----------------------------------------------------------
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Residues in contact with GLN 784 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
780C GLU* 3.4 35.0 + - + +
781C GLU* 3.9 10.9 - - - +
782C ILE 3.4 0.4 - - - -
783C ALA* 1.3 78.8 - - + +
785C VAL* 1.3 53.3 + - + +
787C SER* 3.2 9.6 + - - -
788C LYS* 2.7 35.5 + - - +
----------------------------------------------------------
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Residues in contact with VAL 785 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
781C GLU* 3.1 27.6 + - + +
782C ILE 3.6 4.0 - - - +
783C ALA 3.2 0.2 - - - -
784C GLN* 1.3 75.5 - - + +
786C ARG* 1.3 60.4 + - - +
788C LYS* 3.1 7.3 + - - +
789C ALA* 2.9 32.3 + - + +
782D ILE* 3.6 24.5 - - + -
785D VAL* 4.2 16.2 - - + +
786D ARG* 4.2 30.3 - - + +
789D ALA* 5.6 1.6 - - + -
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Residues in contact with ARG 786 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
782C ILE* 3.0 40.7 + - - +
783C ALA* 3.7 6.1 - - - +
785C VAL* 1.3 75.8 - - - +
787C SER* 1.3 61.6 + - - +
789C ALA* 4.3 4.8 - - - +
790C GLN* 3.2 26.9 + - - +
781D GLU* 2.9 29.5 + - - +
785D VAL* 3.6 32.9 - - + +
----------------------------------------------------------
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Residues in contact with SER 787 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
783C ALA 2.8 13.7 + - - -
784C GLN* 3.2 15.2 + - - -
786C ARG* 1.3 78.7 - - - +
788C LYS* 1.3 62.3 + - - +
790C GLN* 4.1 3.1 - - - +
791C ALA* 3.3 22.7 + - - +
----------------------------------------------------------
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Residues in contact with LYS 788 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
784C GLN 2.7 18.9 + - - +
785C VAL* 3.1 6.5 + - - +
787C SER* 1.3 71.5 + - - +
789C ALA* 1.3 60.7 + - - +
791C ALA* 3.3 6.2 + - - +
792C GLU* 3.0 56.1 + - + +
----------------------------------------------------------
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Residues in contact with ALA 789 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
785C VAL* 2.9 18.0 + - + +
786C ARG* 4.3 5.4 - - - +
788C LYS* 1.3 76.4 - - - +
790C GLN* 1.3 57.5 + - - +
792C GLU* 3.4 13.2 + - - +
793C ALA* 2.8 29.7 + - - +
785D VAL* 6.4 0.4 - - + -
789D ALA* 3.8 29.8 - - + +
792D GLU* 4.5 8.9 - - - +
----------------------------------------------------------
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Residues in contact with GLN 790 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
786C ARG 3.2 19.6 + - - +
787C SER* 4.1 3.8 - - - +
789C ALA* 1.3 74.6 - - - +
791C ALA* 1.3 61.2 + - - +
793C ALA* 4.1 11.9 - - - +
794C LEU* 2.9 52.3 + - + +
792D GLU* 5.0 6.5 + - - +
----------------------------------------------------------
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Residues in contact with ALA 791 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
787C SER 3.3 15.8 + - - +
788C LYS* 3.7 5.8 - - - +
789C ALA 3.3 0.4 - - - -
790C GLN* 1.3 77.2 - - - +
792C GLU* 1.3 61.1 + - + +
794C LEU* 3.3 10.3 + - - +
795C ALA* 3.0 28.4 + - - +
----------------------------------------------------------
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Residues in contact with GLU 792 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
788C LYS* 3.0 49.4 + - + +
789C ALA* 3.7 12.5 - - - +
791C ALA* 1.3 76.5 - - + +
793C ALA* 1.3 57.0 + - - +
795C ALA* 3.6 6.9 + - - +
796C LEU* 3.1 35.1 + - + +
793D ALA* 6.5 0.7 - - + -
----------------------------------------------------------
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Residues in contact with ALA 793 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
789C ALA 2.8 17.8 + - - +
790C GLN* 3.5 15.7 - - - +
791C ALA 3.1 0.2 - - - -
792C GLU* 1.3 76.5 - - - +
794C LEU* 1.3 59.3 + - - +
796C LEU* 3.2 9.0 + - - +
797C GLN* 2.9 35.2 + - + +
792D GLU* 3.4 28.3 - - - +
796D LEU* 4.2 10.3 - - + +
----------------------------------------------------------
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Residues in contact with LEU 794 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
790C GLN* 2.9 41.8 + - + +
791C ALA* 3.3 8.9 + - - +
793C ALA* 1.3 75.0 - - - +
795C ALA* 1.3 57.9 + - - +
797C GLN* 3.4 12.3 + - + +
798C ALA* 3.1 26.2 + - - +
801C ARG* 4.7 6.4 + - - +
----------------------------------------------------------
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Residues in contact with ALA 795 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
791C ALA 3.0 15.9 + - - +
792C GLU* 3.7 8.7 - - - +
794C LEU* 1.3 77.1 - - - +
796C LEU* 1.3 62.5 + - + +
798C ALA* 3.1 18.1 + - - +
799C SER* 3.2 16.4 + - - -
----------------------------------------------------------
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Residues in contact with LEU 796 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
792C GLU* 3.1 19.0 + - + +
793C ALA* 3.2 8.7 + - - +
795C ALA* 1.3 79.4 - - - +
797C GLN* 1.3 56.6 + - - +
799C SER* 3.3 8.9 + - - +
800C LEU* 3.1 30.6 + - - +
793D ALA* 4.2 20.0 - - + +
796D LEU* 3.8 35.4 - - + +
797D GLN* 4.2 31.6 - - + +
800D LEU* 4.7 17.2 - - + +
----------------------------------------------------------
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Residues in contact with GLN 797 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
793C ALA* 2.9 23.2 + - + +
794C LEU* 3.8 12.8 - - + +
795C ALA 3.3 0.2 - - - -
796C LEU* 1.3 73.0 - - - +
798C ALA* 1.3 63.9 + - - +
800C LEU* 3.5 18.7 - - - +
801C ARG* 3.1 47.6 + - - +
796D LEU* 3.1 35.4 - - + +
836G GLU* 4.1 5.1 + - - +
----------------------------------------------------------
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Residues in contact with ALA 798 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
794C LEU 3.1 13.1 + - - +
795C ALA* 3.1 14.6 + - - +
797C GLN* 1.3 77.7 - - - +
799C SER* 1.3 62.4 + - - +
801C ARG* 3.5 23.2 + - - +
802C LYS* 3.2 22.5 + - - +
----------------------------------------------------------
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Residues in contact with SER 799 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
795C ALA 3.2 10.9 + - - -
796C LEU* 3.3 12.3 + - - +
798C ALA* 1.3 76.7 - - - +
800C LEU* 1.3 54.0 + - - +
802C LYS* 3.1 11.6 + - - +
803C GLU* 2.8 39.6 + - - +
800D LEU* 3.8 25.2 - - - +
----------------------------------------------------------
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Residues in contact with LEU 800 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
796C LEU* 3.1 19.1 + - + +
797C GLN* 3.5 34.5 - - - +
799C SER* 1.3 77.4 - - - +
801C ARG* 1.3 61.7 + - + +
803C GLU* 3.4 2.5 + - - +
804C GLN* 3.1 25.6 + - - +
796D LEU* 4.1 22.7 - - + +
799D SER* 3.3 29.4 - - - +
800D LEU* 3.8 28.7 - - + +
803D GLU* 4.6 12.1 - - + +
836G GLU* 5.6 0.4 - - - +
----------------------------------------------------------
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Residues in contact with ARG 801 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
794C LEU* 4.7 6.3 + - - +
797C GLN* 3.1 43.1 + - + +
798C ALA* 3.5 26.1 - - - +
799C SER 3.3 0.2 - - - -
800C LEU* 1.3 76.1 - - + +
802C LYS* 1.3 62.1 + - - +
804C GLN* 3.4 5.8 + - - +
805C MSE 3.1 33.0 + - + +
----------------------------------------------------------
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Residues in contact with LYS 802 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
798C ALA 3.2 16.4 + - - +
799C SER* 3.1 8.9 + - - +
801C ARG* 1.3 80.0 - - - +
803C GLU* 1.3 69.2 + - + +
805C MSE 3.5 8.3 + - - +
806C ARG* 3.2 20.4 + - - +
----------------------------------------------------------
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Residues in contact with GLU 803 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
799C SER* 2.8 23.1 + - - +
800C LEU 3.9 2.7 - - - +
802C LYS* 1.3 82.1 + - + +
804C GLN* 1.3 60.8 + - - +
806C ARG* 3.3 14.5 + - - +
807C ILE* 3.0 28.9 + - - +
800D LEU* 3.8 18.4 - - + -
803D GLU* 3.8 21.8 - - + -
804D GLN* 3.1 35.2 + - + +
807D ILE* 4.0 10.6 - - - +
----------------------------------------------------------
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Residues in contact with GLN 804 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
800C LEU 3.1 16.9 + - - +
801C ARG* 3.9 5.4 - - - +
803C GLU* 1.3 74.0 - - - +
805C MSE 1.3 75.5 - - + +
807C ILE* 3.0 18.5 + - - +
808C GLN* 2.8 56.5 + - - +
811C GLU* 5.3 1.6 + - - -
803D GLU* 3.1 25.1 - - - +
806D ARG* 5.1 4.5 + - - -
----------------------------------------------------------
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Residues in contact with MSE 805 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
801C ARG* 3.1 24.0 + - + +
802C LYS* 3.7 8.1 - - - +
804C GLN* 1.3 89.3 - - + +
806C ARG* 1.3 56.0 - - - +
808C GLN* 3.2 43.1 + - - +
809C SER* 2.9 28.1 + - - -
----------------------------------------------------------
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Residues in contact with ARG 806 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
802C LYS 3.2 10.9 + - - +
803C GLU* 3.4 19.3 - - - +
804C GLN 3.2 0.2 - - - -
805C MSE 1.3 79.3 - - - +
807C ILE* 1.3 60.0 + - - +
809C SER* 3.5 22.0 + - - -
810C LEU* 3.2 48.6 + - - +
807D ILE* 3.5 19.7 - - + +
811D GLU* 3.6 23.0 + - - +
----------------------------------------------------------
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Residues in contact with ILE 807 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
803C GLU 3.0 13.6 + - - +
804C GLN* 3.0 17.1 + - - +
806C ARG* 1.3 74.1 - - - +
808C GLN* 1.3 61.8 + - - +
809C SER 3.1 1.3 - - - -
810C LEU* 3.2 1.7 + - - -
811C GLU* 2.8 37.7 + - - +
803D GLU* 3.7 44.4 - - + +
806D ARG* 3.7 49.4 - - + +
807D ILE* 3.5 17.5 - - + -
810D LEU* 3.8 12.8 - - + +
----------------------------------------------------------
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Residues in contact with GLN 808 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
804C GLN* 2.8 40.2 + - - +
805C MSE 3.2 40.4 - - - +
807C ILE* 1.3 75.8 - - - +
809C SER* 1.3 62.1 + - - +
811C GLU* 3.7 17.1 - - - +
812C LYS* 3.3 24.4 + - - +
----------------------------------------------------------
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Residues in contact with SER 809 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
805C MSE 2.9 16.6 + - - -
806C ARG* 3.5 29.1 + - - -
807C ILE 3.1 0.2 - - - -
808C GLN* 1.3 77.1 - - - +
810C LEU* 1.3 61.8 + - - +
812C LYS* 3.3 7.7 + - - +
813C THR* 3.1 25.3 + - - -
----------------------------------------------------------
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Residues in contact with LEU 810 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
806C ARG* 3.2 45.9 + - - +
807C ILE 3.2 4.1 + - - +
809C SER* 1.3 76.3 - - - +
811C GLU* 1.3 56.1 + - - +
813C THR* 3.0 11.6 + - + +
814C VAL* 2.7 40.3 + - - +
807D ILE* 3.9 28.0 - - + +
810D LEU* 3.8 29.8 - - + -
811D GLU* 4.0 18.4 - - + +
814D VAL* 4.2 19.5 - - + +
----------------------------------------------------------
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Residues in contact with GLU 811 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
804C GLN* 5.3 1.2 + - - -
807C ILE* 2.8 23.7 + - - +
808C GLN* 3.7 23.7 - - - +
810C LEU* 1.3 77.1 - - - +
812C LYS* 1.3 58.9 + - + +
815C GLU* 3.0 16.8 + - - +
806D ARG* 2.5 29.5 + - - -
810D LEU* 3.8 7.6 - - + -
901D PGE 2.8 56.5 + - - +
----------------------------------------------------------
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Residues in contact with LYS 812 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
808C GLN 3.3 12.9 + - - +
809C SER* 3.5 11.0 - - - +
810C LEU 3.1 0.4 - - - -
811C GLU* 1.3 77.5 - - + +
813C THR* 1.3 61.2 + - - +
815C GLU* 3.3 25.8 + - - +
816C GLN* 2.9 28.1 + - - +
----------------------------------------------------------
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Residues in contact with THR 813 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
809C SER* 3.1 16.5 + - - -
810C LEU* 3.0 17.8 + - + +
812C LYS* 1.3 77.8 - - - +
814C VAL* 1.3 56.5 + - - +
816C GLN* 3.2 14.3 + - - +
817C LYS* 2.8 40.4 + - + +
814D VAL* 3.9 29.2 - - + -
----------------------------------------------------------
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Residues in contact with VAL 814 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
810C LEU 2.7 23.0 + - - +
811C GLU 3.6 0.2 - - - +
813C THR* 1.3 73.6 - - - +
815C GLU* 1.3 52.5 + - - +
817C LYS* 3.8 5.8 - - - +
818C THR* 2.7 38.9 + - - +
810D LEU* 3.9 23.8 - - + +
813D THR* 4.3 13.7 - - + -
814D VAL* 3.6 22.0 - - + +
817D LYS* 4.0 23.0 - - + +
901D PGE 3.5 26.0 - - - +
----------------------------------------------------------
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Residues in contact with GLU 815 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
811C GLU 3.0 17.6 + - - +
812C LYS* 3.3 27.0 + - - +
814C VAL* 1.3 75.1 - - - +
816C GLN* 1.3 61.3 + - - +
818C THR* 3.5 7.1 - - - -
819C LYS* 2.8 35.7 + - + +
901D PGE 4.3 6.0 + - - +
----------------------------------------------------------
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Residues in contact with GLN 816 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
812C LYS 2.9 14.9 + - - +
813C THR* 3.2 20.2 + - - +
815C GLU* 1.3 74.7 - - - +
817C LYS* 1.3 72.2 + - - +
819C LYS* 3.2 6.3 + - - +
820C GLU* 2.9 45.6 + - + +
----------------------------------------------------------
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Residues in contact with LYS 817 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
813C THR* 2.8 37.2 + - + +
814C VAL* 3.8 5.6 - - - +
816C GLN* 1.3 79.3 + - - +
818C THR* 1.3 65.0 + - - +
820C GLU* 3.3 26.5 + - - +
821C ASN* 2.9 28.6 + - - +
814D VAL* 4.1 17.3 - - + +
817D LYS* 3.9 36.1 - - + +
818D THR* 3.4 29.5 + - - +
821D ASN* 4.8 2.3 - - - +
----------------------------------------------------------
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Residues in contact with THR 818 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
814C VAL* 2.7 28.2 + - - +
815C GLU* 3.5 8.0 - - - -
817C LYS* 1.3 76.0 - - - +
819C LYS* 1.3 68.2 + - + +
821C ASN* 2.9 8.9 + - - -
822C GLU* 2.5 43.4 - - + +
817D LYS* 3.3 25.9 - - - +
----------------------------------------------------------
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Residues in contact with LYS 819 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
815C GLU* 2.8 25.8 + - + +
816C GLN* 3.8 4.9 - - - +
818C THR* 1.3 75.2 - - + +
820C GLU* 1.3 60.7 + - - +
822C GLU* 3.8 13.4 + - + +
823C GLU* 3.4 37.2 + - - +
----------------------------------------------------------
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Residues in contact with GLU 820 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
816C GLN* 2.9 39.7 + - + +
817C LYS* 3.3 34.6 + - - +
818C THR 2.9 0.8 + - - -
819C LYS* 1.3 75.6 - - - +
821C ASN* 1.3 60.4 + - - +
823C GLU* 3.5 5.2 + - - +
824C LEU* 3.1 29.1 + - - +
821D ASN* 3.5 19.3 - - - +
----------------------------------------------------------
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Residues in contact with ASN 821 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
817C LYS 2.9 13.2 + - - +
818C THR* 2.9 6.4 + - - -
820C GLU* 1.3 67.9 - - - +
822C GLU* 1.3 67.9 + - - +
823C GLU 3.0 5.2 - - - -
824C LEU* 2.7 10.7 + - - +
825C THR* 2.5 44.3 + - + +
817D LYS* 3.9 16.5 + - - +
820D GLU* 4.0 21.8 + - - +
821D ASN* 2.3 41.5 + - - +
824D LEU* 4.9 6.7 - - + +
----------------------------------------------------------
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Residues in contact with GLU 822 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
818C THR* 2.5 40.5 + - + +
819C LYS* 4.0 17.9 + - + +
821C ASN* 1.3 86.5 + - - +
823C GLU* 1.3 66.9 + - - +
825C THR* 3.2 23.9 + - + +
826C ARG* 4.1 6.9 + - - +
----------------------------------------------------------
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Residues in contact with GLU 823 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
819C LYS* 3.4 30.2 + - - +
820C GLU* 4.0 4.5 - - - +
821C ASN 3.0 0.6 - - - -
822C GLU* 1.3 85.4 - - - +
824C LEU* 1.3 64.7 + - - +
825C THR 3.4 0.2 - - - -
826C ARG* 3.4 38.2 + - - +
827C ILE* 3.3 31.5 + - + +
----------------------------------------------------------
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Residues in contact with LEU 824 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
820C GLU 3.1 13.6 + - - +
821C ASN* 2.7 13.1 + - - +
823C GLU* 1.3 77.1 - - - +
825C THR* 1.3 56.3 + - - +
826C ARG 3.1 0.2 - - - -
827C ILE* 3.2 17.2 + - + +
828C CYS* 2.9 29.5 + - - +
821D ASN* 3.8 34.3 - - + +
824D LEU* 3.7 21.8 - - + +
825D THR* 3.5 26.9 - - + +
----------------------------------------------------------
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Residues in contact with THR 825 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
821C ASN* 2.5 26.1 + - + +
822C GLU* 3.2 26.9 + - + +
824C LEU* 1.3 71.9 - - - +
826C ARG* 1.3 54.4 + - - +
828C CYS* 3.7 2.1 - - - +
829C ASP* 2.8 46.6 + - - +
824D LEU* 3.5 26.5 - - + -
802H LYS* 5.6 3.4 - - - +
806H ARG* 4.5 21.5 - - - +
----------------------------------------------------------
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Residues in contact with ARG 826 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
822C GLU 4.1 8.3 - - - +
823C GLU* 3.4 39.9 + - - +
824C LEU 3.1 0.4 - - - -
825C THR* 1.3 78.3 + - - +
827C ILE* 1.3 83.9 + - - +
829C ASP* 3.1 7.7 + - - +
830C ASP* 2.7 60.6 + - - +
----------------------------------------------------------
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Residues in contact with ILE 827 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
823C GLU* 3.3 21.4 + - + +
824C LEU* 3.2 19.6 + - + +
826C ARG* 1.3 107.2 - - - +
828C CYS* 1.3 63.6 + - - +
830C ASP* 3.3 11.0 + - - +
831C LEU* 3.1 20.5 + - + +
828D CYS* 5.7 5.8 - - + -
----------------------------------------------------------
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Residues in contact with CYS 828 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
824C LEU 2.9 16.2 + - - +
825C THR* 3.7 5.4 - - - +
827C ILE* 1.3 76.2 - - - +
829C ASP* 1.3 63.4 + - - +
831C LEU* 3.0 6.2 + - - +
832C ILE* 2.9 33.2 + - - +
824D LEU* 4.2 17.3 - - + -
827D ILE* 4.0 22.7 - - - -
828D CYS* 2.2 47.5 - - - -
798H ALA* 5.7 0.2 - - - -
802H LYS* 4.7 12.3 - - + -
----------------------------------------------------------
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Residues in contact with ASP 829 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
825C THR* 2.8 30.2 + - - +
826C ARG* 3.5 7.1 - - - +
828C CYS* 1.3 73.9 - - - +
830C ASP* 1.3 59.0 + - - +
832C ILE* 3.7 10.4 - - - +
833C SER* 2.9 30.1 + - - -
802H LYS* 2.6 35.1 + - - +
806H ARG* 5.3 1.7 + - - -
----------------------------------------------------------
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Residues in contact with ASP 830 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
826C ARG* 2.7 41.2 + - - +
827C ILE* 3.3 13.9 - - - +
828C CYS 3.1 0.2 - - - -
829C ASP* 1.3 78.4 - - - +
831C LEU* 1.3 57.9 + - - +
833C SER* 2.9 22.5 + - - -
834C LYS* 3.0 29.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU 831 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
827C ILE* 3.1 11.6 + - + +
828C CYS 3.0 10.1 + - - +
830C ASP* 1.3 76.3 - - - +
832C ILE* 1.3 66.8 + - - +
834C LYS* 3.2 28.2 + - + +
835C MSE 3.3 21.2 + - + +
828D CYS* 3.7 32.1 - - + +
831D LEU* 3.4 40.2 - - + -
832D ILE* 4.0 19.7 - - + -
835D MSE 4.9 8.1 - - + -
----------------------------------------------------------
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Residues in contact with ILE 832 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
828C CYS* 2.9 20.5 + - - +
829C ASP* 3.7 17.9 - - - +
831C LEU* 1.3 77.0 - - - +
833C SER* 1.3 63.0 + - - +
835C MSE 3.1 13.8 + - - +
836C GLU* 3.1 39.5 + - - +
831D LEU* 5.0 4.0 - - + -
795H ALA* 3.9 19.3 - - + +
798H ALA* 4.7 10.8 - - + -
799H SER* 3.6 31.0 - - - +
802H LYS* 3.8 31.2 - - + +
----------------------------------------------------------
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Residues in contact with SER 833 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
829C ASP 2.9 16.8 + - - -
830C ASP* 2.9 15.1 + - - -
832C ILE* 1.3 76.8 - - - +
834C LYS* 1.3 67.0 + - - +
836C GLU* 3.3 16.4 + - - +
837C LYS* 3.2 25.6 + - - +
----------------------------------------------------------
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Residues in contact with LYS 834 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
830C ASP* 3.0 33.6 + - - +
831C LEU* 3.2 23.3 + - + +
833C SER* 1.3 85.1 + - - +
835C MSE 1.3 65.4 + - + +
837C LYS* 3.6 10.2 + - - +
838C ILE* 3.3 24.9 + - - +
----------------------------------------------------------
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Residues in contact with MSE 835 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
831C LEU* 3.3 16.8 - - + +
832C ILE 3.1 7.2 + - - +
834C LYS* 1.3 81.9 - - + +
836C GLU* 1.3 62.9 + - - +
838C ILE* 4.0 11.6 - - + +
831D LEU* 4.2 16.4 - - + -
835D MSE 3.5 43.3 - - + +
790H GLN 5.0 0.4 - - - -
791H ALA* 3.3 62.1 - - + +
792H GLU* 4.0 5.0 + - - +
794H LEU* 3.7 18.8 - - + -
795H ALA* 3.9 8.3 - - + +
----------------------------------------------------------
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Residues in contact with GLU 836 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
832C ILE* 3.1 34.1 + - - +
833C SER* 3.3 14.3 + - - +
835C MSE 1.3 76.6 - - - +
837C LYS* 1.3 61.6 + - + +
838C ILE 3.2 10.1 + - - -
792H GLU* 5.1 12.6 - - - +
795H ALA* 4.1 13.0 - - + +
796H LEU* 5.4 8.4 - - + +
799H SER* 4.9 1.6 + - - -
----------------------------------------------------------
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Residues in contact with LYS 837 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
833C SER 3.2 14.1 + - - +
834C LYS* 3.6 6.3 + - - +
835C MSE 3.4 0.6 - - - -
836C GLU* 1.3 82.7 - - + +
838C ILE* 1.3 69.4 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il