Contacts of the helix formed by residues 95 - 151 (chain q) in PDB entry 5OOM
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 95 (chain q).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
205M LEU* 4.7 0.4 - - - -
43p TYR* 3.2 20.2 - - - -
94q PRO* 1.3 76.9 - - - +
96q LEU* 1.3 59.5 + - - +
97q ALA* 3.8 7.8 + - - +
98q THR* 2.9 39.2 + - - +
99q MET* 3.0 17.9 + - - +
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Residues in contact with LEU 96 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
205M LEU* 3.7 20.0 - - + +
211M VAL* 4.1 30.7 - - + -
215M THR* 4.8 0.7 - - + -
223M LEU* 4.0 30.7 - - + +
43p TYR* 3.4 31.8 + - + -
48p LEU* 3.9 27.6 - - + -
49p TYR* 6.0 0.2 - - - +
95q SER* 1.3 73.5 - - - +
97q ALA* 1.3 57.2 + - - +
99q MET* 4.2 4.9 - - + -
100q GLN* 2.9 52.3 + - - +
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Residues in contact with ALA 97 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95q SER* 3.2 8.7 + - - +
96q LEU* 1.3 77.7 - - - +
98q THR* 1.3 62.0 + - + +
100q GLN* 3.9 6.6 - - - +
101q GLU* 2.9 32.3 + - - +
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Residues in contact with THR 98 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94q PRO* 3.3 21.5 - - + +
95q SER* 2.9 28.1 + - - +
97q ALA* 1.3 78.0 - - + +
99q MET* 1.3 60.0 + - - +
101q GLU* 3.8 11.4 - - - +
102q SER* 3.0 28.9 + - - -
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Residues in contact with MET 99 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
205M LEU* 6.1 2.9 - - + -
206M PRO 3.2 26.7 - - - +
207M PRO* 3.4 3.1 - - + -
208M GLU* 3.3 53.1 - - + +
211M VAL* 3.7 16.4 - - + -
94q PRO* 3.5 27.6 - - + +
95q SER 3.0 24.0 + - - +
96q LEU* 3.9 7.2 - - + +
98q THR* 1.3 74.7 + - - +
100q GLN* 1.3 59.9 + - - +
102q SER* 2.8 21.8 + - - -
103q LEU* 3.0 20.7 + - - +
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Residues in contact with GLN 100 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
211M VAL* 4.0 17.0 - - + -
215M THR* 3.8 26.2 - - - +
49p TYR* 4.4 11.9 + - - -
96q LEU* 2.9 36.6 + - + +
97q ALA* 4.1 5.1 - - - +
99q MET* 1.3 77.5 - - - +
101q GLU* 1.3 56.8 + - - +
103q LEU* 3.3 11.0 + - + +
104q ARG* 2.9 36.8 + - + +
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Residues in contact with GLU 101 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97q ALA* 2.9 22.5 + - - +
98q THR* 3.8 12.9 - - - +
99q MET 3.2 0.2 - - - -
100q GLN* 1.3 75.4 - - - +
102q SER* 1.3 59.1 + - - +
104q ARG* 3.2 9.5 + - + +
105q VAL* 3.0 40.7 + - + +
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Residues in contact with SER 102 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
208M GLU* 4.2 15.2 - - - +
98q THR 3.0 14.3 + - - -
99q MET* 2.8 22.0 + - - -
101q GLU* 1.3 76.3 - - - +
103q LEU* 1.3 57.1 + - - +
105q VAL* 3.8 7.0 - - - +
106q LYS* 3.0 42.7 + - - +
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Residues in contact with LEU 103 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
208M GLU* 3.3 28.5 - - + +
211M VAL* 3.7 23.1 - - + -
212M PRO* 3.6 33.4 - - + -
99q MET 3.0 19.9 + - - +
100q GLN* 3.5 11.4 - - + +
101q GLU 3.2 0.2 - - - -
102q SER* 1.3 77.7 - - - +
104q ARG* 1.3 61.1 + - + +
106q LYS* 3.9 9.2 - - + +
107q GLN* 2.9 46.2 + - + +
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Residues in contact with ARG 104 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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100q GLN* 2.9 25.3 + - + +
101q GLU* 3.2 10.5 + - + +
103q LEU* 1.3 77.0 - - - +
105q VAL* 1.3 59.0 + - + +
107q GLN* 3.6 16.5 + - - +
108q LEU* 2.9 30.7 + - - +
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Residues in contact with VAL 105 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101q GLU* 3.0 29.3 + - + +
102q SER* 3.8 8.5 - - - +
103q LEU 3.2 0.2 - - - -
104q ARG* 1.3 79.1 - - + +
106q LYS* 1.3 61.1 + - + +
108q LEU* 3.3 6.0 + - - +
109q ALA* 2.9 31.9 + - + +
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Residues in contact with LYS 106 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
208M GLU* 5.5 11.1 - - + +
102q SER* 3.0 28.8 + - - +
103q LEU* 4.1 9.9 - - + +
104q ARG 3.3 0.2 - - - -
105q VAL* 1.3 78.8 - - + +
107q GLN* 1.3 60.2 + - + +
109q ALA* 4.3 3.8 - - - +
110q GLU* 2.9 35.5 + - - +
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Residues in contact with GLN 107 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
212M PRO* 5.1 12.1 - - - +
103q LEU* 2.9 32.5 + - + +
104q ARG* 4.0 18.5 + - - +
106q LYS* 1.3 76.6 - - + +
108q LEU* 1.3 57.6 + - - +
110q GLU* 4.5 8.7 - - - +
111q GLU* 3.0 45.1 + - - +
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Residues in contact with LEU 108 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104q ARG 2.9 20.8 + - - +
105q VAL* 3.5 7.2 - - + +
107q GLN* 1.3 77.8 - - - +
109q ALA* 1.3 61.0 + - + +
111q GLU* 3.8 7.5 - - + +
112q GLN* 2.9 49.2 + - + +
115q ARG* 6.0 2.5 - - - +
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Residues in contact with ALA 109 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105q VAL* 2.9 21.0 + - + +
106q LYS* 4.3 4.0 - - - +
108q LEU* 1.3 78.4 - - + +
110q GLU* 1.3 60.2 + - - +
112q GLN* 3.4 7.0 + - - +
113q LYS* 3.0 27.7 + - - +
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Residues in contact with GLU 110 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106q LYS 2.9 22.0 + - - +
107q GLN* 4.0 10.4 - - - +
109q ALA* 1.3 77.2 - - - +
111q GLU* 1.3 62.3 + - + +
113q LYS* 3.2 9.4 + - + +
114q ARG* 2.9 27.3 + - + +
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Residues in contact with GLU 111 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107q GLN* 3.0 28.0 + - - +
108q LEU* 4.1 7.3 - - + +
110q GLU* 1.3 79.7 - - + +
112q GLN* 1.3 59.3 + - - +
114q ARG* 3.8 16.4 - - + +
115q ARG* 2.9 51.5 + - + +
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Residues in contact with GLN 112 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108q LEU* 2.9 38.4 + - + +
109q ALA* 3.8 6.5 - - - +
110q GLU 3.2 0.2 - - - -
111q GLU* 1.3 77.3 - - - +
113q LYS* 1.3 61.4 + - - +
115q ARG* 2.8 43.0 + - - +
116q GLU* 2.9 52.8 + - - +
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Residues in contact with LYS 113 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109q ALA 3.0 14.7 + - - +
110q GLU* 3.3 13.2 - - + +
112q GLN* 1.3 75.5 - - - +
114q ARG* 1.3 56.5 + - - +
116q GLU* 3.3 11.8 + - + +
117q ARG* 3.0 33.6 + - + +
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Residues in contact with ARG 114 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110q GLU* 2.9 17.0 + - + +
111q GLU* 3.8 16.5 - - + +
113q LYS* 1.3 76.2 - - - +
115q ARG* 1.3 64.9 + - - +
117q ARG* 3.9 4.9 - - - +
118q GLU* 2.9 56.8 + - + +
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Residues in contact with ARG 115 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108q LEU* 6.0 2.8 - - - +
111q GLU* 2.9 36.0 + - + +
112q GLN* 2.8 40.8 + - - +
114q ARG* 1.3 80.9 - - - +
116q GLU* 1.3 62.0 + - + +
118q GLU* 4.0 6.0 - - - +
119q GLN* 2.9 35.5 + - - +
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Residues in contact with GLU 116 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112q GLN* 2.9 39.0 + - - +
113q LYS* 3.9 12.2 - - + +
115q ARG* 1.3 74.3 - - - +
117q ARG* 1.3 60.7 + - - +
119q GLN* 4.0 10.7 - - - +
120q HIS* 3.0 31.4 + - - +
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Residues in contact with ARG 117 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
261 THR* 3.4 25.7 + - - +
271 GLY* 5.4 1.2 - - - -
491 VAL* 4.3 24.6 - - - +
113q LYS* 3.0 22.4 + - - +
114q ARG* 4.0 5.4 - - - +
116q GLU* 1.3 78.5 - - - +
118q GLU* 1.3 57.6 + - - +
120q HIS* 3.2 6.6 + - + +
121q ILE* 2.9 53.1 + - + +
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Residues in contact with GLU 118 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114q ARG* 2.9 51.4 + - + +
115q ARG* 4.0 6.1 - - - +
117q ARG* 1.3 77.1 - - - +
119q GLN* 1.3 58.1 + - - +
121q ILE* 3.5 9.2 + - - +
122q ALA* 3.0 28.7 + - + +
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Residues in contact with GLN 119 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115q ARG* 2.9 21.6 + - - +
116q GLU* 4.0 10.3 - - - +
118q GLU* 1.3 78.0 - - - +
120q HIS* 1.3 56.6 + - - +
122q ALA* 3.2 6.1 + - - +
123q GLU* 2.9 56.7 + - + +
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Residues in contact with HIS 120 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
261 THR* 3.8 29.2 + - + +
116q GLU 3.0 19.5 + - - +
117q ARG* 3.7 6.7 - - + +
119q GLN* 1.3 77.5 - - - +
121q ILE* 1.3 59.3 + - + +
123q GLU* 3.5 13.8 + - - +
124q CYS* 3.0 54.5 + - - -
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Residues in contact with ILE 121 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
241 ALA* 4.6 0.2 - - - +
251 GLY* 3.6 40.4 - - - +
261 THR* 4.0 9.2 - - - +
491 VAL* 4.5 12.3 - - + +
501 VAL* 4.7 5.6 - - + -
117q ARG* 2.9 50.4 + - + +
118q GLU* 3.9 7.6 - - - +
120q HIS* 1.3 78.5 - - + +
122q ALA* 1.3 58.6 + - - +
124q CYS* 3.5 1.9 + - - +
125q MET* 2.9 38.0 + - + +
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Residues in contact with ALA 122 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118q GLU* 3.0 20.0 + - + +
119q GLN* 3.6 7.9 - - + +
121q ILE* 1.3 78.7 - - - +
123q GLU* 1.3 57.4 + - + +
125q MET* 3.8 5.1 - - - +
126q ALA* 3.0 27.4 + - - +
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Residues in contact with GLU 123 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119q GLN* 2.9 46.8 + - + +
120q HIS* 3.8 15.5 + - - +
122q ALA* 1.3 74.8 - - + +
124q CYS* 1.3 67.3 + - - +
126q ALA* 3.0 9.8 + - - +
127q LYS* 3.0 25.2 + - - +
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Residues in contact with CYS 124 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
231 GLU 3.6 25.8 - - - +
241 ALA* 3.7 11.7 - - + -
261 THR* 4.9 0.9 - - + -
120q HIS* 3.0 50.4 + - - +
121q ILE* 4.0 2.0 - - - +
123q GLU* 1.3 77.5 - - - +
125q MET* 1.3 58.4 + - - +
127q LYS* 3.1 13.5 + - - +
128q MET* 3.0 30.0 + - - +
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Residues in contact with MET 125 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
241 ALA* 3.6 20.6 - - + -
501 VAL* 3.6 31.2 - - + -
521 GLN* 3.2 31.9 - - - +
541 VAL* 3.9 8.3 - - + -
121q ILE* 2.9 24.3 + - + +
122q ALA* 3.9 5.8 - - - +
124q CYS* 1.3 74.4 - - - +
126q ALA* 1.3 64.0 + - - +
128q MET* 3.3 23.8 + - + +
129q PRO* 3.4 15.4 - - + +
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Residues in contact with ALA 126 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122q ALA 3.0 15.3 + - - +
123q GLU* 3.0 11.4 + - - +
125q MET* 1.3 76.7 - - - +
127q LYS* 1.3 60.2 + - - +
128q MET 3.6 0.3 + - - -
129q PRO* 3.8 8.7 - - - +
130q GLN* 5.5 1.4 + - - +
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Residues in contact with LYS 127 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123q GLU* 3.0 13.6 + - - +
124q CYS* 3.1 13.2 + - - +
126q ALA* 1.3 78.1 - - - +
128q MET* 1.3 62.0 + - - +
129q PRO* 3.7 0.7 - - - -
130q GLN* 4.0 11.7 + - + +
131q MET* 3.3 37.1 + - + +
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Residues in contact with MET 128 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
231 GLU* 4.1 19.3 - - - -
241 ALA* 3.7 7.2 - - + -
541 VAL* 3.7 15.5 - - + -
551 LEU* 3.3 41.1 - - + +
124q CYS* 3.0 20.0 + - - +
125q MET* 3.3 32.9 + - + +
127q LYS* 1.3 77.5 - - - +
129q PRO* 1.4 67.1 - - + +
131q MET* 2.9 31.2 + - - +
132q ILE* 2.9 31.3 + - + +
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Residues in contact with PRO 129 (chain q).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125q MET* 3.4 17.3 - - + +
126q ALA* 3.8 9.6 - - - +
128q MET* 1.4 88.9 - - + +
130q GLN* 1.3 57.0 + - - +
132q ILE* 3.3 14.1 + - + +
133q VAL* 3.0 34.2 + - + +
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Residues in contact with GLN 130 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126q ALA 5.8 1.1 - - - +
127q LYS* 4.3 14.1 - - + +
128q MET 3.2 0.6 - - - -
129q PRO* 1.3 79.4 - - - +
131q MET* 1.3 59.2 + - + +
133q VAL* 3.3 6.9 + - + +
134q ASN* 2.9 47.4 + - - +
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Residues in contact with MET 131 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
231 GLU* 4.6 26.9 - - + +
551 LEU* 3.3 17.5 - - + +
124q CYS 5.7 0.2 - - - +
127q LYS* 3.3 38.3 + - + +
128q MET* 2.9 19.1 + - - +
130q GLN* 1.3 78.9 - - + +
132q ILE* 1.3 57.0 + - - +
134q ASN* 3.9 7.7 - - - +
135q TRP* 2.9 27.4 + - - +
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Residues in contact with ILE 132 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441 LEU* 4.1 22.9 - - + -
531 ARG 4.2 11.7 - - - +
551 LEU* 3.8 22.9 - - + -
128q MET* 2.9 32.5 + - + +
129q PRO* 3.6 15.0 - - + +
130q GLN 3.2 0.2 - - - -
131q MET* 1.3 75.0 - - - +
133q VAL* 1.3 62.5 + - + +
135q TRP* 3.0 4.2 + - + +
136q GLN* 2.9 52.0 + - + +
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Residues in contact with VAL 133 (chain q).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129q PRO* 3.0 19.0 + - + +
130q GLN* 3.8 6.3 - - + +
132q ILE* 1.3 80.1 - - + +
134q ASN* 1.3 62.8 + - - +
136q GLN* 3.4 10.1 + - - +
137q GLN* 3.0 42.2 + - + +
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Residues in contact with ASN 134 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130q GLN* 2.9 41.5 + - - +
131q MET* 3.9 7.8 - - - +
133q VAL* 1.3 76.2 - - - +
135q TRP* 1.3 58.3 + - - +
137q GLN* 3.3 19.8 + - - +
138q GLN* 3.0 31.4 + - + +
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Residues in contact with TRP 135 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
421 THR* 2.5 50.2 + - + -
431 LEU* 4.2 3.6 - - + -
441 LEU* 3.7 37.0 - - + -
551 LEU* 3.5 24.5 - - + -
131q MET 2.9 21.4 + - - +
132q ILE* 3.0 5.6 + - + +
134q ASN* 1.3 77.1 - - - +
136q GLN* 1.3 72.8 + - + +
138q GLN* 3.1 13.5 + - + +
139q GLN* 2.9 64.8 + - + +
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Residues in contact with GLN 136 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441 LEU* 4.4 12.3 - - - +
132q ILE* 2.9 36.0 + - - +
133q VAL* 4.0 9.0 - - - +
135q TRP* 1.3 87.4 - - + +
137q GLN* 1.3 60.7 + - + +
139q GLN* 3.2 11.9 + - + +
140q ARG* 3.0 35.8 + - - +
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Residues in contact with GLN 137 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133q VAL* 3.0 35.1 + - + +
134q ASN* 3.5 22.6 + - - +
135q TRP 3.2 0.2 - - - -
136q GLN* 1.3 77.3 - - - +
138q GLN* 1.3 58.3 + - - +
140q ARG* 3.3 16.9 + - - +
141q GLU* 3.0 33.6 + - - +
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Residues in contact with GLN 138 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134q ASN* 3.0 19.7 + - + +
135q TRP* 3.1 15.9 + - + +
137q GLN* 1.3 74.5 - - - +
139q GLN* 1.3 63.2 + - - +
141q GLU* 3.1 37.1 + - - +
142q ASN* 2.9 37.4 + - - +
----------------------------------------------------------
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Residues in contact with GLN 139 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
421 THR* 4.9 0.2 + - - -
135q TRP* 2.9 65.7 + - + +
136q GLN* 3.2 15.7 + - + +
138q GLN* 1.3 76.5 - - - +
140q ARG* 1.3 58.2 + - + +
142q ASN* 3.0 18.1 + - - +
143q TRP* 2.8 40.6 + - + +
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Residues in contact with ARG 140 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136q GLN* 3.0 19.6 + - - +
137q GLN* 3.3 18.0 + - - +
139q GLN* 1.3 73.2 - - + +
141q GLU* 1.3 60.9 + - + +
143q TRP* 3.4 16.1 - - + +
144q GLU* 2.9 41.7 + - + +
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Residues in contact with GLU 141 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137q GLN* 3.0 20.7 + - - +
138q GLN* 3.1 40.8 + - - +
139q GLN 3.2 0.2 - - - -
140q ARG* 1.3 77.2 - - + +
142q ASN* 1.3 59.6 + - - +
144q GLU* 4.5 9.6 - - - +
145q LYS* 2.9 53.2 + - + +
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Residues in contact with ASN 142 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391 GLU* 5.0 12.0 + - - +
138q GLN* 2.9 27.7 + - - +
139q GLN* 3.0 19.4 + - - +
141q GLU* 1.3 75.7 + - - +
143q TRP* 1.3 54.1 + - - +
145q LYS* 4.8 6.3 - - - +
146q ALA* 2.7 41.0 + - - +
----------------------------------------------------------
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Residues in contact with TRP 143 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139q GLN* 2.8 40.3 + - + +
140q ARG* 3.4 18.6 - - + +
141q GLU 3.3 0.2 - - - -
142q ASN* 1.3 75.7 - - - +
144q GLU* 1.3 60.2 + - + +
146q ALA* 3.3 2.9 + - + +
147q GLN* 2.9 62.8 + - + +
150q LYS* 6.0 4.3 - - - -
----------------------------------------------------------
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Residues in contact with GLU 144 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140q ARG* 2.9 27.1 + - + +
141q GLU* 4.2 8.7 - - - +
143q TRP* 1.3 77.5 - - + +
145q LYS* 1.3 61.1 + - + +
147q GLN* 4.1 5.8 - - - +
148q ALA* 2.9 30.7 + - - +
----------------------------------------------------------
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Residues in contact with LYS 145 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141q GLU* 2.9 38.9 + - + +
142q ASN* 4.6 7.0 - - - +
144q GLU* 1.3 75.1 - - + +
146q ALA* 1.3 60.7 + - - +
148q ALA* 3.8 5.6 - - - +
149q ASP* 2.9 39.9 + - - +
----------------------------------------------------------
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Residues in contact with ALA 146 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142q ASN 2.7 24.9 + - - +
143q TRP* 3.7 4.7 - - + +
145q LYS* 1.3 77.2 - - - +
147q GLN* 1.3 58.5 + - + +
149q ASP* 3.1 10.3 + - - +
150q LYS* 2.9 38.3 + - - +
----------------------------------------------------------
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Residues in contact with GLN 147 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143q TRP* 2.9 48.0 + - + +
144q GLU* 4.2 4.1 - - - +
146q ALA* 1.3 76.2 - - + +
148q ALA* 1.3 58.2 + - - +
150q LYS* 3.1 45.4 + - + +
151q GLU* 3.4 14.0 + - - +
----------------------------------------------------------
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Residues in contact with ALA 148 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
144q GLU 2.9 21.0 + - - +
145q LYS* 3.9 6.3 - - - +
146q ALA 3.3 0.2 - - - -
147q GLN* 1.3 77.2 - - - +
149q ASP* 1.3 63.5 + - - +
150q LYS 3.6 0.2 + - - -
151q GLU* 3.7 27.3 + - - +
152q ARG* 4.4 11.4 + - - +
----------------------------------------------------------
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Residues in contact with ASP 149 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145q LYS* 2.9 27.8 + - - +
146q ALA* 3.1 8.1 + - - +
148q ALA* 1.3 79.9 - - - +
150q LYS* 1.3 62.2 + - - +
151q GLU 3.3 0.8 + - - -
152q ARG* 4.1 20.0 + - - +
----------------------------------------------------------
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Residues in contact with LYS 150 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143q TRP* 6.0 3.8 - - - -
146q ALA* 2.9 26.3 + - - +
147q GLN* 3.1 33.8 + - + +
149q ASP* 1.3 78.3 - - - +
151q GLU* 1.3 62.6 + - - +
152q ARG 3.4 3.6 + - - -
----------------------------------------------------------
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Residues in contact with GLU 151 (chain q).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147q GLN 3.6 13.7 - - - +
148q ALA* 4.0 17.6 - - - +
149q ASP 3.3 1.0 - - - -
150q LYS* 1.3 79.5 - - + +
152q ARG* 1.3 64.0 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il