Contacts of the helix formed by residues 16 - 66 (chain C) in PDB entry 5T0I
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ALA 16 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12C GLU* 5.3 13.2 - - - +
14C GLY 3.0 0.6 - - - -
15C LYS* 1.3 79.6 - - - +
17C GLY* 1.3 62.6 + - - +
19C GLY* 3.8 1.6 + - - -
20C LEU* 3.8 13.3 + - - +
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Residues in contact with GLY 17 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12C GLU 5.6 0.4 + - - -
13C GLU 4.4 4.3 - - - -
14C GLY 2.7 23.1 + - - +
16C ALA* 1.3 73.8 - - - +
18C SER* 1.3 50.4 + - - -
19C GLY 3.2 0.4 - - - -
20C LEU* 2.8 14.6 + - - +
21C ARG* 2.8 37.6 + - - +
41D TYR* 4.6 0.4 - - - -
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Residues in contact with SER 18 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14C GLY 2.2 34.9 + - - -
15C LYS* 3.3 14.9 + - - +
17C GLY* 1.3 66.9 - - - -
19C GLY* 1.3 52.1 + - - +
21C ARG* 3.0 10.5 + - - +
22C GLN* 2.4 37.2 + - - +
40D LEU* 4.4 20.9 - - - +
41D TYR* 3.5 37.1 + - - -
44D TYR* 5.1 1.8 - - - +
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Residues in contact with GLY 19 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15C LYS 3.8 10.9 + - - -
16C ALA 3.8 3.3 + - - -
17C GLY 3.2 1.0 - - - -
18C SER* 1.3 82.0 + - - +
20C LEU* 1.3 50.7 + - - +
22C GLN* 3.1 8.3 + - - +
23C TYR* 2.4 37.8 + - - +
40D LEU* 5.9 2.4 - - - +
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Residues in contact with LEU 20 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
16C ALA 3.8 8.1 + - - +
17C GLY* 2.8 17.4 + - - +
19C GLY* 1.3 71.1 - - - +
21C ARG* 1.3 69.6 + - - +
23C TYR* 3.3 14.1 + - + +
24C TYR* 3.0 66.2 + - + +
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Residues in contact with ARG 21 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17C GLY 2.8 17.9 + - - +
18C SER* 3.0 15.5 + - - +
20C LEU* 1.3 81.7 - - + +
22C GLN* 1.3 62.8 + - - +
24C TYR* 3.3 37.1 + - - +
25C LEU 3.4 6.2 + - - -
41D TYR* 4.4 14.1 + - + +
44D TYR* 3.1 46.0 + - + -
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Residues in contact with GLN 22 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18C SER 2.4 31.3 + - - +
19C GLY* 3.5 8.7 - - - +
21C ARG* 1.3 65.7 - - - +
23C TYR* 1.3 60.6 + - - +
25C LEU* 3.4 14.0 + - - +
26C SER* 2.9 33.5 + - - -
40D LEU* 4.2 6.2 + - - +
43D ARG* 4.2 8.9 - - - +
44D TYR* 3.8 30.0 - - + +
47D LEU* 3.2 33.3 - - - +
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Residues in contact with TYR 23 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19C GLY 2.4 29.6 + - - +
20C LEU* 3.4 17.3 - - + +
22C GLN* 1.3 67.8 - - - +
24C TYR* 1.3 81.4 + + - +
26C SER* 2.8 13.8 + - - -
27C LYS* 2.5 79.3 + - + +
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Residues in contact with TYR 24 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20C LEU* 3.0 47.5 + - + +
21C ARG* 3.3 31.8 + - - +
23C TYR* 1.3 98.4 - + - +
25C LEU* 1.3 63.3 + - + +
27C LYS* 3.3 6.0 + - + +
28C ILE* 2.8 41.3 + - + +
44D TYR* 5.5 2.9 - - - +
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Residues in contact with LEU 25 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21C ARG 3.4 3.8 + - - +
22C GLN* 3.6 15.3 - - - +
23C TYR 3.3 0.4 - - - -
24C TYR* 1.3 81.8 - - + +
26C SER* 1.3 52.0 + - - +
28C ILE* 3.2 11.8 + - + +
29C GLU* 2.4 38.4 + - - +
44D TYR* 3.2 57.4 - - + +
47D LEU* 3.8 25.1 - - + -
48D GLN* 3.8 16.6 - - + +
51D LEU* 4.0 17.9 - - + +
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Residues in contact with SER 26 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22C GLN* 2.9 22.1 + - - -
23C TYR* 2.8 28.4 + - - -
25C LEU* 1.3 73.3 - - - +
27C LYS* 1.3 59.0 + - - +
29C GLU* 3.6 14.5 - - - +
30C GLU* 2.8 30.3 + - - +
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Residues in contact with LYS 27 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23C TYR* 2.5 59.3 + - + +
24C TYR* 3.5 7.9 - - + +
26C SER* 1.3 74.5 + - - +
28C ILE* 1.3 54.3 + - + +
30C GLU* 3.4 7.2 + - + +
31C LEU* 2.7 37.6 + - + +
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Residues in contact with ILE 28 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24C TYR* 2.8 33.2 + - + +
25C LEU* 3.7 8.5 - - + +
27C LYS* 1.3 71.8 - - + +
29C GLU* 1.3 54.9 + - - +
31C LEU* 3.6 22.0 - - + -
32C GLN* 2.3 44.8 + - + +
51D LEU* 3.6 34.5 - - + -
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Residues in contact with GLU 29 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25C LEU 2.4 31.5 + - - +
26C SER* 3.6 16.3 - - - +
28C ILE* 1.3 69.3 - - - +
30C GLU* 1.3 66.7 + - - +
32C GLN* 3.5 7.3 - - + +
33C LEU* 2.6 50.6 + - - +
51D LEU* 4.3 7.1 - - + +
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Residues in contact with GLU 30 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
26C SER 2.8 21.1 + - - +
27C LYS* 3.8 7.9 - - + +
29C GLU* 1.3 77.2 + - - +
31C LEU* 1.3 55.8 + - - +
33C LEU* 3.5 25.6 - - - +
34C ILE* 2.7 56.4 + - + +
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Residues in contact with LEU 31 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
27C LYS* 2.7 27.8 + - + +
28C ILE* 3.3 23.6 - - + +
30C GLU* 1.3 73.6 - - - +
32C GLN* 1.3 56.5 + - - +
34C ILE* 3.2 18.8 + - + +
35C VAL* 2.8 43.8 + - + +
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Residues in contact with GLN 32 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28C ILE* 2.3 37.7 + - + +
29C GLU* 3.6 8.1 - - - +
31C LEU* 1.3 69.9 - - - +
33C LEU* 1.3 52.7 + - - +
35C VAL* 3.0 10.0 + - - +
36C ASN* 2.4 40.8 + - + +
51D LEU* 3.6 31.4 - - + +
54D LEU* 3.6 33.5 + - + +
55D GLU* 4.0 11.3 + - - +
58D GLU* 2.8 33.6 + - - +
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Residues in contact with LEU 33 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29C GLU* 2.6 34.4 + - - +
30C GLU* 3.2 28.5 + - - +
32C GLN* 1.3 72.8 - - - +
34C ILE* 1.3 54.7 + - + +
36C ASN* 3.4 17.4 - - + +
37C ASP* 2.5 42.0 + - + +
40C GLN* 6.4 0.9 - - + -
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Residues in contact with ILE 34 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
30C GLU* 2.7 42.5 + - + +
31C LEU* 3.4 19.3 - - + +
33C LEU* 1.3 73.0 - - - +
35C VAL* 1.3 58.8 + - + +
37C ASP* 3.3 7.5 + - - +
38C LYS* 2.8 46.3 + - + +
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Residues in contact with VAL 35 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31C LEU* 2.8 33.1 + - + +
32C GLN* 3.5 13.0 - - - +
34C ILE* 1.3 77.3 - - + +
36C ASN* 1.3 57.8 + - - +
38C LYS* 3.3 24.2 + - + +
39C SER* 2.9 25.1 + - - -
58D GLU* 3.3 31.1 - - + +
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Residues in contact with ASN 36 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32C GLN* 2.4 33.8 + - + +
33C LEU* 3.5 19.3 - - + +
35C VAL* 1.3 67.0 - - - +
37C ASP* 1.3 54.1 + - - +
39C SER* 2.5 35.4 + - - -
40C GLN* 2.5 52.2 + - - +
43C ARG* 4.7 3.4 + - - +
54D LEU* 3.5 32.8 - - - +
58D GLU* 4.3 5.6 + - - -
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Residues in contact with ASP 37 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33C LEU* 2.5 26.9 + - + +
34C ILE* 3.6 8.3 - - - +
36C ASN* 1.3 71.0 - - - +
38C LYS* 1.3 58.7 + - + +
40C GLN* 4.3 11.4 - - - +
41C ASN* 2.9 31.3 + - - +
----------------------------------------------------------
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Residues in contact with LYS 38 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
34C ILE* 2.8 32.0 + - + +
35C VAL* 3.4 26.4 - - + +
37C ASP* 1.3 77.0 - - + +
39C SER* 1.3 56.4 + - - +
41C ASN* 2.7 19.2 - - - +
42C LEU* 3.1 18.4 - - - +
----------------------------------------------------------
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Residues in contact with SER 39 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35C VAL 2.9 11.6 + - - -
36C ASN* 2.5 38.3 + - - -
38C LYS* 1.3 77.5 - - - +
40C GLN* 1.3 52.4 + - - -
42C LEU* 2.9 8.4 + - - +
43C ARG* 2.5 49.3 + - - +
58D GLU* 4.0 16.5 + - - -
61D ILE* 4.0 17.6 - - - +
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Residues in contact with GLN 40 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33C LEU* 6.4 0.9 - - + -
36C ASN* 2.5 48.7 + - - +
37C ASP* 4.1 10.8 - - - +
39C SER* 1.3 72.4 + - - +
41C ASN* 1.3 63.1 + - - +
43C ARG* 3.1 57.0 + - - +
44C ARG* 3.4 6.6 + - - +
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Residues in contact with ASN 41 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
37C ASP* 2.9 18.3 + - - +
38C LYS* 2.7 22.1 - - - +
40C GLN* 1.3 76.8 - - - +
42C LEU* 1.3 75.5 + - - +
44C ARG* 3.4 14.4 + - - +
45C LEU* 3.2 23.4 - - + +
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Residues in contact with LEU 42 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38C LYS 3.1 19.7 - - - +
39C SER* 2.9 7.7 + - - +
41C ASN* 1.3 81.4 + - - +
43C ARG* 1.3 64.9 + - - +
44C ARG 3.1 1.3 - - - -
45C LEU* 3.2 34.7 + - + +
46C GLN* 3.2 9.0 + - - +
61D ILE* 4.1 5.6 - - + -
62D LYS* 3.9 22.0 - - + +
65D GLN* 3.2 42.3 - - - +
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Residues in contact with ARG 43 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36C ASN* 4.7 4.2 + - - +
39C SER* 2.5 30.1 + - - +
40C GLN* 3.3 45.7 + - - +
42C LEU* 1.3 73.8 - - - +
44C ARG* 1.3 55.3 + - - +
46C GLN* 3.3 6.9 + - - +
47C ALA* 3.0 28.2 + - - +
54D LEU* 5.1 8.9 - - - +
57D GLN* 4.6 26.9 + - - +
60D TYR* 6.2 0.4 - - - -
61D ILE* 3.6 26.0 - - + +
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Residues in contact with ARG 44 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40C GLN 3.4 6.3 + - - +
41C ASN* 3.5 14.1 - - - +
42C LEU 3.1 0.6 - - - -
43C ARG* 1.3 76.7 - - - +
45C LEU* 1.3 62.3 + - + +
47C ALA* 4.4 17.9 - - - +
48C GLN* 2.7 54.9 + - + +
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Residues in contact with LEU 45 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
41C ASN* 3.2 26.9 - - + +
42C LEU* 3.2 30.3 + - + +
44C ARG* 1.3 80.3 - - + +
46C GLN* 1.3 61.3 + - - +
48C GLN* 4.1 14.6 - - - +
49C ARG* 3.2 34.6 + - - +
65D GLN* 5.8 0.2 - - - +
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Residues in contact with GLN 46 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42C LEU 3.2 10.8 + - - +
43C ARG* 3.5 9.5 - - - +
44C ARG 3.1 0.4 - - - -
45C LEU* 1.3 74.7 - - - +
47C ALA* 1.3 56.6 + - - +
49C ARG* 3.1 5.7 + - - +
50C ASN* 2.4 39.3 + - + +
61D ILE* 3.4 19.8 - - - +
64D GLU* 3.2 39.1 + - - +
65D GLN* 3.3 33.8 + - + +
68D LEU* 3.7 25.3 - - + +
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Residues in contact with ALA 47 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
43C ARG 3.0 13.3 + - - +
44C ARG* 4.1 20.0 - - - +
46C GLN* 1.3 80.3 - - - +
48C GLN* 1.3 54.4 + - - +
50C ASN* 3.5 12.4 + - - +
51C GLU* 2.7 34.3 + - - +
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Residues in contact with GLN 48 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44C ARG* 2.7 38.5 + - - +
45C LEU* 4.1 19.8 - - - +
47C ALA* 1.3 72.4 - - - +
49C ARG* 1.3 57.7 + - + +
51C GLU* 2.9 9.0 + - - +
52C LEU* 2.6 58.0 + - + +
----------------------------------------------------------
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Residues in contact with ARG 49 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45C LEU* 3.2 22.0 + - - +
46C GLN* 3.1 4.1 + - - +
48C GLN* 1.3 85.9 - - + +
50C ASN* 1.3 51.6 + - - +
52C LEU* 3.3 16.5 - - + +
53C ASN* 2.5 35.0 + - - +
68D LEU* 5.3 4.7 - - + -
69D LYS* 3.3 64.4 + - - +
72D PHE* 3.4 41.3 - - + -
73D LEU* 4.6 6.9 - - - +
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Residues in contact with ASN 50 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46C GLN* 2.4 33.7 + - + +
47C ALA* 3.6 13.1 - - - +
49C ARG* 1.3 68.0 - - - +
51C GLU* 1.3 57.5 + - - +
53C ASN* 3.3 9.7 + - - +
54C ALA* 3.1 22.3 + - - +
68D LEU* 3.6 32.9 - - + +
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Residues in contact with GLU 51 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47C ALA 2.7 21.8 + - - +
48C GLN* 3.3 4.5 - - - +
50C ASN* 1.3 69.7 - - - +
52C LEU* 1.3 68.6 + - - +
54C ALA* 3.0 12.3 + - + +
55C LYS* 2.8 51.9 + - - +
58C LEU* 5.6 4.0 - - - +
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Residues in contact with LEU 52 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48C GLN* 2.6 49.6 + - + +
49C ARG* 3.4 16.8 - - + +
51C GLU* 1.3 83.9 - - - +
53C ASN* 1.3 58.6 + - - +
55C LYS* 3.0 35.2 + - + +
56C VAL* 3.1 15.1 + - - +
72D PHE* 3.6 28.5 - - + -
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Residues in contact with ASN 53 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49C ARG 2.5 20.5 + - - +
50C ASN* 3.3 15.3 + - - +
51C GLU 3.2 0.2 - - - -
52C LEU* 1.3 73.1 - - - +
54C ALA* 1.3 57.0 + - - +
56C VAL* 3.1 14.6 - - - +
57C ARG* 3.3 16.6 + - - +
68D LEU* 3.5 26.3 - - + +
71D GLU* 4.3 9.2 + - - +
72D PHE* 3.6 16.8 - - + -
75D ALA* 3.4 24.4 - - - +
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Residues in contact with ALA 54 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
50C ASN 3.1 10.0 + - - +
51C GLU* 3.0 17.5 + - + +
53C ASN* 1.3 75.7 - - - +
55C LYS* 1.3 52.0 + - - +
56C VAL 3.4 0.4 - - - -
57C ARG* 3.3 8.6 + - - +
58C LEU* 2.5 36.9 + - + +
----------------------------------------------------------
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Residues in contact with LYS 55 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51C GLU* 2.8 44.9 + - - +
52C LEU* 3.0 30.2 + - + +
54C ALA* 1.3 76.3 - - - +
56C VAL* 1.3 61.5 + - + +
58C LEU* 3.3 17.9 - - + +
59C LEU* 2.9 28.9 + - - +
99D ASN* 5.7 4.4 - - - +
117D SER* 5.0 14.4 + - - +
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Residues in contact with VAL 56 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
52C LEU 3.1 12.6 + - - +
53C ASN* 3.1 22.4 - - - +
55C LYS* 1.3 76.2 - - + +
57C ARG* 1.3 62.8 + - + +
59C LEU* 4.0 5.0 - - - +
60C ARG* 3.1 30.5 + - - +
72D PHE* 4.9 3.8 - - + -
75D ALA* 3.7 29.6 - - + +
76D GLN* 4.7 14.1 - - - +
78D GLU* 6.1 1.3 - - + -
79D VAL* 3.7 31.5 - - + +
117D SER* 6.1 6.1 - - - -
----------------------------------------------------------
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Residues in contact with ARG 57 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53C ASN* 3.3 21.9 + - - +
54C ALA* 3.3 11.8 + - - +
55C LYS 3.1 0.4 - - - -
56C VAL* 1.3 84.6 - - + +
58C LEU* 1.3 58.5 + - - +
59C LEU 3.4 0.2 - - - -
60C ARG* 3.7 26.5 - - - +
61C GLU* 2.8 30.0 + - - +
74D HIS* 5.0 6.1 + - - -
75D ALA* 5.2 5.9 - - - +
78D GLU* 3.6 40.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU 58 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51C GLU* 5.6 3.4 - - - +
54C ALA 2.5 19.5 + - - +
55C LYS* 3.0 21.9 + - + +
57C ARG* 1.3 72.4 - - - +
59C LEU* 1.3 62.0 + - - +
61C GLU* 3.4 4.1 + - - +
62C GLU* 2.8 33.9 + - + +
114D ARG* 4.4 26.0 - - - +
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Residues in contact with LEU 59 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55C LYS 2.9 14.0 + - - +
56C VAL* 4.1 7.6 - - - +
58C LEU* 1.3 76.7 - - + +
60C ARG* 1.3 66.0 + - + +
62C GLU* 4.0 5.3 - - - +
63C LEU* 2.8 42.7 + - + +
79D VAL* 4.8 15.0 - - + -
82D ILE* 6.0 3.6 - - + -
114D ARG* 5.3 14.8 - - + +
115D ILE 3.6 15.7 - - - +
116D LEU* 4.0 13.2 - - + -
117D SER* 3.4 41.3 - - - +
----------------------------------------------------------
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Residues in contact with ARG 60 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56C VAL 3.1 23.2 + - - +
57C ARG* 3.7 30.1 - - - +
58C LEU 3.3 0.2 - - - -
59C LEU* 1.3 77.3 - - + +
61C GLU* 1.3 65.2 + - - +
63C LEU* 3.3 17.8 + - - +
64C GLN* 3.1 61.3 + - - +
67C GLN* 5.5 1.6 - - - +
78D GLU* 5.6 4.4 + - + -
79D VAL* 5.2 9.0 - - + +
81D ARG* 4.4 10.1 - - - +
82D ILE* 3.3 44.6 - - - +
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Residues in contact with GLU 61 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57C ARG 2.8 22.8 + - - +
58C LEU* 3.9 4.9 - - - +
60C ARG* 1.3 72.9 - - - +
62C GLU* 1.3 62.6 + - - +
64C GLN* 3.3 19.0 + - - +
65C LEU* 3.3 34.0 + - + +
----------------------------------------------------------
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Residues in contact with GLU 62 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58C LEU* 2.8 22.7 + - + +
59C LEU* 4.0 4.9 - - - +
61C GLU* 1.3 74.6 - - - +
63C LEU* 1.3 65.0 + - - +
65C LEU* 3.1 36.0 + - - +
66C LEU* 3.2 13.4 + - - +
117C ARG* 4.8 5.0 + - - -
124C HIS* 4.6 14.0 - - - -
114D ARG* 3.3 50.4 + - + +
----------------------------------------------------------
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Residues in contact with LEU 63 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59C LEU* 2.8 28.4 + - + +
60C ARG* 3.6 22.9 - - - +
62C GLU* 1.3 77.4 - - - +
64C GLN* 1.3 51.5 + - - +
66C LEU* 2.9 16.0 + - + +
67C GLN* 2.6 53.1 + - - +
82D ILE* 3.6 30.7 - - + -
114D ARG* 6.1 5.1 - - + +
136D SER* 3.9 25.4 - - - +
138D ALA* 4.1 15.9 - - + -
----------------------------------------------------------
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Residues in contact with GLN 64 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60C ARG* 3.1 57.1 + - - +
61C GLU* 3.5 19.1 - - - +
62C GLU 3.2 0.4 - - - -
63C LEU* 1.3 76.8 - - - +
65C LEU* 1.3 64.6 + - + +
67C GLN* 3.5 31.3 + - - +
68C GLU* 4.6 8.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU 65 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61C GLU* 3.3 31.2 - - + +
62C GLU* 3.1 30.9 + - - +
64C GLN* 1.3 80.2 - - + +
66C LEU* 1.3 58.1 + - + +
68C GLU* 5.7 0.7 - - - +
71C SER* 5.0 0.5 + - - -
117C ARG* 3.7 31.5 + - - +
118C ASN* 3.5 24.3 + - - +
119C ASP* 5.2 2.9 - - - +
----------------------------------------------------------
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Residues in contact with LEU 66 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62C GLU* 3.2 12.7 + - - +
63C LEU* 2.9 19.5 + - + +
65C LEU* 1.3 74.8 - - - +
67C GLN* 1.3 58.5 + - - +
68C GLU 3.6 1.1 - - - -
70C GLY* 3.1 35.8 - - - -
71C SER* 3.3 22.9 - - - +
112D TYR* 3.7 19.3 - - + +
113D VAL* 3.6 24.0 - - + -
114D ARG* 3.8 28.5 - - + +
136D SER* 3.1 33.1 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il