Contacts of the helix formed by residues 1117 - 1161 (chain B) in PDB entry 5TWV
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO1117 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1115B THR 4.7 1.3 - - - +
1116B THR* 1.3 83.7 - - - +
1118B LEU* 1.3 63.8 + - - +
1119B GLY* 3.2 4.5 + - - +
1120B SER* 3.7 14.4 + - - +
1121B ILE* 3.4 22.5 + - - +
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Residues in contact with LEU1118 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
503B LEU* 5.5 6.3 - - + -
1116B THR 3.3 6.5 + - - +
1117B PRO* 1.3 70.5 - - - +
1119B GLY* 1.3 59.7 + - - +
1121B ILE* 3.8 8.7 - - - -
1122B LEU* 2.9 45.8 + - + +
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Residues in contact with GLY1119 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1117B PRO* 3.2 3.4 - - - +
1118B LEU* 1.3 79.5 - - - +
1120B SER* 1.3 51.1 + - - +
1122B LEU* 5.2 0.9 - - - -
1123B ASN* 2.6 42.5 + - - +
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Residues in contact with SER1120 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1117B PRO* 3.7 18.6 + - - +
1118B LEU 3.4 0.4 - - - -
1119B GLY* 1.3 74.1 - - - +
1121B ILE* 1.3 66.5 + - - +
1123B ASN* 4.4 2.5 - - - -
1124B ARG* 2.9 34.6 + - - +
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Residues in contact with ILE1121 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1105B ILE* 6.3 3.1 - - + -
1116B THR* 4.8 14.6 - - - -
1117B PRO* 3.4 17.9 - - + +
1118B LEU* 3.5 10.0 + - - +
1119B GLY 3.3 0.4 - - - -
1120B SER* 1.3 80.5 - - - +
1122B LEU* 1.3 61.5 + - + +
1124B ARG* 4.5 0.8 - - - +
1125B PHE* 2.7 45.0 + - + +
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Residues in contact with LEU1122 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
499B THR* 4.0 34.1 - - - +
500B ASN* 5.8 0.9 - - - -
502B MET* 5.8 2.5 - - + -
503B LEU* 4.6 18.4 - - + +
1118B LEU* 2.9 35.7 + - + +
1119B GLY* 4.8 0.9 - - - +
1121B ILE* 1.3 85.8 - - + +
1123B ASN* 1.3 61.0 + - - +
1125B PHE* 4.1 15.7 - - + -
1126B SER* 2.9 33.7 + - - -
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Residues in contact with ASN1123 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1119B GLY 2.6 25.2 + - - +
1120B SER* 4.2 2.7 - - - +
1122B LEU* 1.3 74.7 - - - +
1124B ARG* 1.3 54.7 + - - +
1127B SER* 2.3 51.9 + - - -
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Residues in contact with ARG1124 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1120B SER* 2.9 21.7 + - - +
1121B ILE 4.5 0.4 - - - +
1123B ASN* 1.3 76.9 - - - +
1125B PHE* 1.3 50.3 + - - +
1127B SER* 3.7 4.4 + - - -
1128B ASP* 2.6 39.8 + - - +
1314B ARG* 3.7 41.1 - - + +
1318B LEU* 5.9 5.4 - - + -
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Residues in contact with PHE1125 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
499B THR* 6.0 4.5 - - - -
1098B HIS* 4.8 13.0 - + - -
1101B LEU* 3.6 33.9 - - + -
1102B LEU* 4.3 23.1 - - + -
1105B ILE* 5.5 6.1 - - + -
1121B ILE* 2.7 29.8 + - + +
1122B LEU* 4.0 17.3 - - + +
1124B ARG* 1.3 77.8 - - - +
1126B SER* 1.3 63.6 + - - +
1128B ASP* 3.6 2.7 - - - +
1129B CYS* 2.9 48.3 + - - -
1318B LEU* 5.1 15.7 - - + -
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Residues in contact with SER1126 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495B ARG 5.7 0.7 + - - -
496B LEU* 5.2 9.5 + - - +
499B THR* 5.2 14.7 - - - -
1122B LEU* 2.9 22.3 + - - -
1125B PHE* 1.3 83.0 - - - +
1127B SER* 1.3 58.3 + - - +
1129B CYS* 3.2 5.6 + - - +
1130B ASN* 2.9 31.9 + - - +
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Residues in contact with SER1127 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1123B ASN* 2.3 40.2 + - - -
1124B ARG* 3.7 4.7 - - - -
1126B SER* 1.3 75.2 - - - +
1128B ASP* 1.3 58.3 + - - +
1130B ASN* 5.0 2.5 - - - -
1131B THR* 2.7 42.3 + - - +
1314B ARG* 4.7 4.9 - - - -
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Residues in contact with ASP1128 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1124B ARG 2.6 26.2 + - - +
1125B PHE* 3.6 3.8 - - - +
1127B SER* 1.3 79.8 + - - +
1129B CYS* 1.3 57.1 + - - +
1131B THR* 4.8 0.9 - - - -
1132B ILE* 2.8 37.6 + - - +
1311B ALA* 4.6 8.5 - - - +
1314B ARG* 4.6 11.7 - - - +
1315B ILE* 4.5 25.1 - - + -
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Residues in contact with CYS1129 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1097B LEU* 5.3 5.4 - - - -
1098B HIS* 4.4 29.4 - - + +
1101B LEU* 5.5 1.1 - - - -
1125B PHE* 2.9 45.7 + - - +
1126B SER* 3.2 6.5 + - - +
1128B ASP* 1.3 76.8 - - - +
1130B ASN* 1.3 56.2 + - - +
1133B ASP* 2.6 41.1 + - - +
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Residues in contact with ASN1130 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
492B SER* 5.5 10.8 - - - -
1126B SER* 2.9 17.6 + - - +
1127B SER* 4.7 2.2 - - - +
1129B CYS* 1.3 76.8 - - - +
1131B THR* 1.3 58.8 + - - +
1133B ASP* 4.7 1.1 - - - -
1134B GLN* 2.8 34.8 + - - +
1135B HIS* 4.7 0.6 - - - -
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Residues in contact with THR1131 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1127B SER* 2.7 24.8 + - - -
1128B ASP* 4.8 0.9 - - - -
1130B ASN* 1.3 77.9 - - - +
1132B ILE* 1.3 59.8 + - - +
1135B HIS* 2.9 45.3 + - - +
1136B ILE 4.0 0.2 + - - -
1311B ALA* 5.6 7.4 - - - -
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Residues in contact with ILE1132 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1128B ASP* 2.8 24.6 + - + +
1129B CYS* 5.1 0.2 - - - -
1131B THR* 1.3 76.9 - - - +
1133B ASP* 1.3 58.0 + - - +
1136B ILE* 2.7 43.4 + - + +
1137B PRO* 4.2 0.5 - - - +
1311B ALA* 4.8 23.0 - - + +
1312B VAL* 5.3 4.9 - - + +
1315B ILE* 5.6 4.5 - - + -
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Residues in contact with ASP1133 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
536B PHE* 5.6 5.9 - - - +
1090B GLY* 5.6 8.2 - - - +
1093B VAL* 6.1 4.9 - - + +
1094B ALA* 5.7 11.7 - - + -
1129B CYS* 2.6 25.0 + - + +
1130B ASN* 4.4 1.8 - - - +
1132B ILE* 1.3 77.0 - - - +
1134B GLN* 1.3 59.6 + - - +
1136B ILE 4.8 0.2 - - - -
1137B PRO* 4.4 9.4 - - - +
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Residues in contact with GLN1134 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
485B GLN* 5.9 6.2 - - - +
488B THR* 5.6 6.1 - - - -
536B PHE* 5.5 7.8 - - - +
539B TYR* 4.9 15.6 - - - +
1130B ASN 2.8 21.9 + - - +
1133B ASP* 1.3 80.7 - - - +
1135B HIS* 1.3 85.0 + - + +
1136B ILE 3.7 0.4 - - - -
1137B PRO* 4.4 6.1 - - - +
1138B SER* 5.4 3.6 - - - -
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Residues in contact with HIS1135 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1130B ASN 4.7 0.2 - - - -
1131B THR* 2.9 32.4 + - - +
1134B GLN* 1.3 101.6 - - + +
1136B ILE* 1.3 66.5 + - - +
1137B PRO 3.6 1.1 - - - -
1138B SER* 4.0 7.9 + - - +
1139B THR* 3.8 19.1 + - - -
1308B GLN* 5.2 3.9 - - - +
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Residues in contact with ILE1136 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1004B TYR* 4.9 14.6 - - + +
1131B THR 4.0 0.4 + - - -
1132B ILE* 2.7 33.0 + - + +
1135B HIS* 1.3 79.4 - - - +
1137B PRO* 1.4 62.6 - - + +
1138B SER 3.3 0.2 + - - -
1139B THR* 3.9 1.0 - - - -
1140B LEU* 2.9 30.6 + - - +
1308B GLN* 5.3 10.3 - - + +
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Residues in contact with PRO1137 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
540B THR* 6.4 1.1 - - - -
1086B VAL* 3.8 28.6 - - + +
1089B THR* 5.8 3.1 - - - -
1090B GLY* 5.4 14.1 - - - +
1132B ILE 4.2 3.4 - - - +
1133B ASP* 4.4 9.2 - - - +
1134B GLN 4.4 8.5 - - - +
1135B HIS 3.9 1.8 - - - -
1136B ILE* 1.4 93.8 - - + +
1138B SER* 1.3 58.7 + - - +
1140B LEU* 4.0 7.0 - - + -
1141B GLU* 2.9 32.2 + - - +
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Residues in contact with SER1138 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
543B SER* 6.2 5.2 - - - -
1134B GLN 5.4 3.1 - - - -
1135B HIS* 4.0 10.7 + - - -
1136B ILE 3.3 1.0 - - - -
1137B PRO* 1.3 79.9 - - - +
1139B THR* 1.3 59.4 + - - +
1141B GLU* 3.9 1.3 - - - +
1142B CYS* 2.9 30.6 + - - +
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Residues in contact with THR1139 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1135B HIS 3.8 12.1 + - - -
1136B ILE 3.6 2.7 + - - -
1138B SER* 1.3 76.7 - - - +
1140B LEU* 1.3 61.3 + - - +
1142B CYS* 3.8 6.8 - - - +
1143B LEU* 2.9 28.8 + - - +
1301B ASN* 5.1 2.3 - - - +
1304B ASP* 4.1 33.2 - - - -
1305B MET* 5.1 3.3 - - - +
1308B GLN* 4.9 7.6 - - - -
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Residues in contact with LEU1140 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1004B TYR* 4.6 15.5 - - + +
1136B ILE 2.9 22.1 + - - +
1137B PRO* 3.8 8.1 - - + +
1139B THR* 1.3 76.8 - - - +
1141B GLU* 1.3 57.6 + - - +
1143B LEU* 3.1 6.5 + - - +
1144B SER* 2.9 27.9 + - - -
1305B MET* 6.5 0.4 - - - -
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Residues in contact with GLU1141 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1082B THR 5.4 8.1 - - - +
1083B SER* 6.4 0.7 - - - -
1086B VAL* 4.9 12.6 - - + -
1137B PRO 2.9 18.6 + - - +
1138B SER* 4.3 1.6 - - - +
1140B LEU* 1.3 73.2 - - - +
1142B CYS* 1.3 60.0 + - - +
1144B SER* 4.0 6.7 - - - +
1145B ARG* 2.9 30.7 + - - +
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Residues in contact with CYS1142 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1138B SER 2.9 20.9 + - - +
1139B THR* 4.0 7.4 - - - +
1141B GLU* 1.3 78.7 - - - +
1143B LEU* 1.3 56.8 + - - +
1145B ARG* 3.9 5.2 - - - +
1146B SER* 2.9 31.0 + - - -
1301B ASN* 4.5 5.7 - - + +
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Residues in contact with LEU1143 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1139B THR 2.9 21.0 + - - +
1140B LEU* 3.1 7.4 + - - +
1142B CYS* 1.3 75.6 - - - +
1144B SER* 1.3 60.0 + - - +
1146B SER* 3.9 0.7 - - - -
1147B THR* 2.9 32.7 + - - -
1301B ASN* 4.2 26.4 - - + +
1305B MET* 4.5 11.7 - - + -
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Residues in contact with SER1144 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1017B VAL* 6.3 3.1 - - - -
1140B LEU 2.9 15.2 + - - -
1141B GLU* 4.0 7.0 - - - -
1142B CYS 3.4 0.2 - - - -
1143B LEU* 1.3 73.8 - - - +
1145B ARG* 1.3 60.5 + - - +
1147B THR* 4.8 2.7 - - - -
1148B LEU* 2.9 33.3 + - - +
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Residues in contact with ARG1145 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1024B HIS* 5.3 1.0 + - - -
1141B GLU 2.9 19.5 + - - +
1142B CYS* 4.0 5.4 - - - +
1144B SER* 1.3 77.7 - - - +
1146B SER* 1.3 57.1 + - - +
1148B LEU* 3.9 3.9 - - - +
1149B LEU* 2.9 31.9 + - - +
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Residues in contact with SER1146 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1142B CYS 2.9 19.9 + - - -
1143B LEU 3.9 2.9 - - - -
1145B ARG* 1.3 78.4 - - - +
1147B THR* 1.3 57.6 + - - +
1149B LEU* 3.9 4.3 - - - +
1150B CYS* 2.9 29.9 + - - +
1294B TYR* 4.7 6.9 - - - +
1297B TRP* 3.9 34.3 - - - -
1298B MET* 4.3 6.3 - - - +
1301B ASN* 4.2 5.8 - - - -
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Residues in contact with THR1147 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1143B LEU 2.9 18.1 + - - -
1144B SER* 4.4 3.1 - - - -
1146B SER* 1.3 74.3 - - - +
1148B LEU* 1.3 62.0 + - - +
1150B CYS* 3.7 5.3 - - - +
1151B VAL* 2.9 32.9 + - - +
1298B MET* 5.3 4.2 - - - +
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Residues in contact with LEU1148 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1021B LEU* 5.8 8.1 - - + -
1024B HIS* 3.7 22.0 - - + -
1144B SER 2.9 22.0 + - - +
1145B ARG* 3.9 4.9 - - - +
1147B THR* 1.3 78.3 - - - +
1149B LEU* 1.3 49.7 + - - +
1151B VAL* 4.0 2.0 - - - +
1152B SER* 2.7 38.8 + - - -
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Residues in contact with LEU1149 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1024B HIS* 3.5 21.9 + - + +
1145B ARG 2.9 19.0 + - - +
1146B SER* 4.0 3.6 - - - +
1148B LEU* 1.3 75.9 - - - +
1150B CYS* 1.3 58.4 + - - +
1153B ALA* 2.9 25.3 + - - +
1294B TYR* 3.2 44.1 - - + +
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Residues in contact with CYS1150 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1146B SER 2.9 19.1 + - - +
1147B THR* 3.3 8.9 + - - +
1149B LEU* 1.3 76.6 - - - +
1151B VAL* 1.3 51.6 + - - +
1154B LEU* 2.6 39.1 + - - +
1294B TYR* 3.7 33.7 - - + +
1298B MET* 4.5 5.8 - - + -
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Residues in contact with VAL1151 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1147B THR 2.9 16.6 + - - +
1148B LEU* 4.6 1.8 - - - +
1150B CYS* 1.3 75.8 - - - +
1152B SER* 1.3 59.4 + - - +
1154B LEU* 3.7 5.8 - - - -
1155B THR* 2.9 31.4 + - - -
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Residues in contact with SER1152 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1024B HIS* 3.6 24.2 - - - -
1028B VAL* 4.7 18.2 - - - +
1148B LEU 2.7 22.8 + - - -
1149B LEU 3.6 1.8 - - - -
1150B CYS 3.2 0.2 - - - -
1151B VAL* 1.3 79.2 - - - +
1153B ALA* 1.3 58.7 + - - +
1155B THR* 3.9 1.8 - - - -
1156B VAL* 2.9 29.1 + - - +
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Residues in contact with ALA1153 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1028B VAL* 5.3 2.4 - - + +
1149B LEU 2.9 18.4 + - - +
1152B SER* 1.3 72.1 - - - +
1154B LEU* 1.3 59.9 + - - +
1156B VAL* 3.7 8.7 - - - -
1157B ILE* 2.9 31.9 + - - +
1287B TYR* 4.1 34.7 - - + +
1291B VAL* 5.8 1.5 - - + +
1294B TYR* 3.7 20.2 - - + -
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Residues in contact with LEU1154 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1150B CYS 2.6 25.6 + - - +
1151B VAL* 3.7 7.6 - - - +
1152B SER 3.2 0.2 - - - -
1153B ALA* 1.3 77.5 - - - +
1155B THR* 1.3 58.5 + - - +
1157B ILE* 3.9 1.3 - - - +
1158B SER* 2.9 29.6 + - - -
1291B VAL* 5.9 6.0 - - + +
1294B TYR* 5.6 0.2 - - - -
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Residues in contact with THR1155 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1151B VAL 2.9 18.2 + - - -
1152B SER* 4.3 2.2 - - - -
1154B LEU* 1.3 75.5 - - - +
1156B VAL* 1.3 59.1 + - - +
1158B SER* 3.6 8.1 - - - -
1159B TYR* 2.9 28.8 + - - +
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Residues in contact with VAL1156 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1028B VAL* 4.3 17.5 - - + -
1152B SER 2.9 20.9 + - - +
1153B ALA* 3.8 8.7 - - - -
1154B LEU 3.3 0.2 - - - -
1155B THR* 1.3 76.1 - - - +
1157B ILE* 1.3 58.9 + - - +
1159B TYR* 3.3 6.4 + - - +
1160B VAL* 2.9 25.0 + - - +
1287B TYR* 4.8 10.8 - - + -
----------------------------------------------------------
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Residues in contact with ILE1157 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1153B ALA 2.9 19.4 + - - +
1154B LEU* 4.5 1.3 - - - +
1156B VAL* 1.3 73.9 - - - +
1158B SER* 1.3 59.3 + - - +
1160B VAL* 3.3 11.0 + - - +
1161B THR* 3.0 25.6 + - - -
1283B LEU* 6.5 0.2 - - - -
1284B GLY* 4.2 17.6 - - - +
1287B TYR* 4.0 27.0 - - + +
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Residues in contact with SER1158 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1154B LEU 2.9 23.5 + - - -
1155B THR* 3.6 9.9 - - - -
1156B VAL 3.2 0.2 - - - -
1157B ILE* 1.3 76.1 - - - +
1159B TYR* 1.3 57.7 + - - +
1161B THR* 2.9 27.6 + - - +
1162B PRO 4.3 3.3 - - - +
1166B VAL* 5.1 16.9 - - - +
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Residues in contact with TYR1159 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1032B TYR* 6.4 2.7 - + - -
1155B THR 2.9 17.7 + - - +
1156B VAL* 3.9 4.7 - - - +
1158B SER* 1.3 73.8 - - - +
1160B VAL* 1.3 63.0 + - - +
1161B THR 2.9 11.7 - - - +
----------------------------------------------------------
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Residues in contact with VAL1160 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1156B VAL 2.9 15.3 + - - +
1157B ILE* 3.5 15.9 - - + +
1158B SER 3.2 0.2 - - - -
1159B TYR* 1.3 79.2 - - - +
1161B THR* 1.3 58.6 + - - +
1162B PRO* 4.0 3.1 - - - +
1270B ASN* 5.2 5.9 - - - +
1280B LEU* 4.7 23.9 - - + +
1283B LEU* 5.5 3.6 - - + -
1284B GLY* 5.3 7.4 - - - +
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Residues in contact with THR1161 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1157B ILE 3.0 13.4 + - - -
1158B SER* 2.9 20.2 - - - +
1159B TYR* 2.9 16.5 - - - +
1160B VAL* 1.3 76.2 - - - +
1162B PRO* 1.3 72.1 - - - +
1165B LEU* 3.6 27.8 - - - -
1266B THR* 3.9 13.5 - - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il