Contacts of the helix formed by residues 1117 - 1161 (chain D) in PDB entry 5TWV
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO1117 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1115D THR 4.7 1.6 - - - +
1116D THR* 1.3 83.6 - - - +
1118D LEU* 1.3 64.1 + - - +
1119D GLY* 3.2 4.3 + - - +
1120D SER* 3.7 13.8 + - - +
1121D ILE* 3.4 22.3 + - + +
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Residues in contact with LEU1118 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
503D LEU* 5.5 6.5 - - + -
1116D THR 3.3 5.6 + - - +
1117D PRO* 1.3 70.3 - - - +
1119D GLY* 1.3 59.5 + - - +
1120D SER 3.4 0.2 - - - -
1121D ILE* 3.8 8.5 - - - -
1122D LEU* 2.9 46.8 + - + +
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Residues in contact with GLY1119 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1117D PRO* 3.2 3.4 - - - +
1118D LEU* 1.3 78.5 - - - +
1120D SER* 1.3 50.8 + - - +
1122D LEU* 5.2 0.9 - - - -
1123D ASN* 2.6 42.2 + - - +
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Residues in contact with SER1120 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1117D PRO* 3.7 18.1 + - - +
1119D GLY* 1.3 74.2 - - - +
1121D ILE* 1.3 65.9 + - - +
1123D ASN* 4.4 2.9 - - - -
1124D ARG* 2.9 35.0 + - - +
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Residues in contact with ILE1121 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1105D ILE* 6.3 2.7 - - + -
1116D THR* 4.8 14.6 - - - -
1117D PRO* 3.4 17.5 - - + +
1118D LEU* 3.5 9.6 + - - +
1119D GLY 3.3 0.4 - - - -
1120D SER* 1.3 81.8 - - - +
1122D LEU* 1.3 60.6 + - + +
1124D ARG* 5.2 0.2 - - - -
1125D PHE* 2.7 44.9 + - + +
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Residues in contact with LEU1122 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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499D THR* 4.0 35.0 - - - +
500D ASN* 5.8 0.7 - - - -
502D MET* 5.8 2.2 - - + -
503D LEU* 4.6 17.9 - - + -
1118D LEU* 2.9 37.4 + - + +
1119D GLY* 5.2 0.9 - - - -
1121D ILE* 1.3 85.3 - - + +
1123D ASN* 1.3 61.3 + - - +
1125D PHE* 4.1 15.7 - - + -
1126D SER* 2.9 34.3 + - - -
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Residues in contact with ASN1123 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1119D GLY 2.6 25.1 + - - +
1120D SER* 4.2 2.7 - - - +
1122D LEU* 1.3 75.6 - - - +
1124D ARG* 1.3 54.1 + - - +
1127D SER* 2.3 52.8 + - - -
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Residues in contact with ARG1124 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1120D SER* 2.9 21.3 + - - +
1121D ILE* 4.5 0.4 - - - +
1123D ASN* 1.3 77.9 - - - +
1125D PHE* 1.3 51.3 + - - +
1127D SER* 3.7 4.5 - - - -
1128D ASP* 2.6 39.3 + - - +
1314D ARG* 3.7 40.2 - - + +
1318D LEU* 5.9 5.2 - - + -
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Residues in contact with PHE1125 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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499D THR* 6.0 3.8 - - - -
1098D HIS* 4.8 13.0 - + - -
1101D LEU* 3.6 34.1 - - + -
1102D LEU* 4.3 23.3 - - + -
1105D ILE* 5.5 5.6 - - + -
1121D ILE* 2.7 29.5 + - + +
1122D LEU* 4.0 18.2 - - + +
1124D ARG* 1.3 78.0 - - - +
1126D SER* 1.3 66.0 + - - +
1128D ASP* 3.6 2.4 - - - +
1129D CYS* 2.9 49.4 + - - -
1318D LEU* 5.1 17.2 - - + +
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Residues in contact with SER1126 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495D ARG 5.7 0.9 + - - -
496D LEU* 5.2 9.7 + - - +
499D THR* 5.2 14.8 - - - -
1122D LEU* 2.9 21.7 + - - -
1125D PHE* 1.3 82.8 - - - +
1127D SER* 1.3 58.4 + - - +
1129D CYS* 3.2 5.3 + - - +
1130D ASN* 2.9 32.2 + - - +
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Residues in contact with SER1127 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1123D ASN* 2.3 38.8 + - - +
1124D ARG* 3.7 5.0 - - - -
1126D SER* 1.3 75.2 - - - +
1128D ASP* 1.3 57.9 + - - +
1130D ASN* 4.6 2.5 - - - +
1131D THR* 2.7 41.8 + - - +
1314D ARG* 4.7 5.5 - - - -
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Residues in contact with ASP1128 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1124D ARG 2.6 25.3 + - - +
1125D PHE* 3.6 4.3 - - - +
1127D SER* 1.3 79.7 + - - +
1129D CYS* 1.3 58.0 + - - +
1131D THR* 4.8 0.7 - - - -
1132D ILE* 2.8 37.2 + - - +
1311D ALA* 4.6 9.0 - - - +
1314D ARG* 4.6 12.1 - - + +
1315D ILE* 4.5 25.5 - - + +
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Residues in contact with CYS1129 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1097D LEU* 5.3 5.4 - - - -
1098D HIS* 4.4 31.0 - - + +
1101D LEU* 5.5 1.3 - - - -
1125D PHE* 2.9 45.9 + - - +
1126D SER* 3.2 6.5 + - - +
1128D ASP* 1.3 75.3 - - - +
1130D ASN* 1.3 57.1 + - - +
1133D ASP* 2.6 41.1 + - + +
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Residues in contact with ASN1130 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
492D SER* 5.5 10.8 - - - -
1126D SER* 2.9 17.4 + - - +
1127D SER* 4.7 2.5 - - - +
1129D CYS* 1.3 76.9 - - - +
1131D THR* 1.3 59.3 + - - +
1133D ASP* 4.7 1.1 - - - -
1134D GLN* 2.8 34.3 + - - +
1135D HIS* 4.7 0.6 - - - -
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Residues in contact with THR1131 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1127D SER* 2.7 24.8 + - - +
1128D ASP* 4.8 0.4 - - - -
1130D ASN* 1.3 76.7 - - - +
1132D ILE* 1.3 59.5 + - - +
1135D HIS* 2.9 46.5 + - - +
1311D ALA* 5.6 7.4 - - - -
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Residues in contact with ILE1132 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1128D ASP* 2.8 25.2 + - + +
1131D THR* 1.3 77.7 - - - +
1133D ASP* 1.3 57.5 + - - +
1136D ILE* 2.7 42.9 + - + +
1137D PRO* 4.2 0.7 - - - +
1311D ALA* 4.8 22.0 - - + +
1312D VAL* 5.3 5.2 - - + +
1315D ILE* 5.6 4.3 - - + -
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Residues in contact with ASP1133 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
536D PHE* 5.6 6.1 - - - +
1090D GLY* 5.6 8.0 - - - +
1093D VAL* 6.1 3.6 - - + +
1094D ALA* 5.7 11.2 - - + -
1129D CYS* 2.6 25.2 + - + +
1130D ASN* 4.4 1.6 - - - +
1132D ILE* 1.3 77.5 - - - +
1134D GLN* 1.3 58.2 + - - +
1136D ILE 4.8 0.2 - - - -
1137D PRO* 4.4 10.2 - - - +
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Residues in contact with GLN1134 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
485D GLN* 5.9 6.2 - - - +
488D THR* 5.6 6.1 - - - -
536D PHE* 5.5 8.3 - - - +
539D TYR* 4.9 15.2 - - - +
1130D ASN 2.8 22.1 + - - +
1133D ASP* 1.3 80.1 - - - +
1135D HIS* 1.3 84.0 + - + +
1136D ILE 3.7 0.7 - - - -
1137D PRO* 4.4 5.7 - - - +
1138D SER* 5.4 3.5 - - - -
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Residues in contact with HIS1135 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1130D ASN 5.5 0.2 - - - -
1131D THR* 2.9 32.6 + - - +
1134D GLN* 1.3 102.2 - - + +
1136D ILE* 1.3 65.9 + - - +
1137D PRO* 3.6 1.8 - - - -
1138D SER* 4.0 7.1 + - - +
1139D THR* 3.8 19.1 + - - -
1308D GLN* 5.2 4.1 - - - +
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Residues in contact with ILE1136 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1004D TYR* 4.9 13.9 - - + +
1131D THR 4.0 0.4 + - - -
1132D ILE* 2.7 32.0 + - + +
1135D HIS* 1.3 79.6 - - - +
1137D PRO* 1.4 61.2 - - + +
1138D SER 3.3 0.3 + - - -
1139D THR* 3.9 1.2 - - - -
1140D LEU* 2.9 30.6 + - - +
1308D GLN* 5.3 10.3 - - + +
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Residues in contact with PRO1137 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
540D THR* 6.4 1.1 - - - -
1086D VAL* 3.8 28.4 - - + +
1089D THR* 5.8 3.8 - - - -
1090D GLY* 5.4 13.5 - - - +
1132D ILE 4.2 3.4 - - - +
1133D ASP* 4.4 9.4 - - - +
1134D GLN 4.4 8.5 - - - +
1135D HIS 3.9 1.6 - - - -
1136D ILE* 1.4 92.1 - - + +
1138D SER* 1.3 57.4 + - - +
1140D LEU* 3.7 7.6 - - + -
1141D GLU* 2.9 32.6 + - - +
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Residues in contact with SER1138 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
543D SER* 6.2 4.7 - - - -
1134D GLN 5.4 2.9 - - - -
1135D HIS* 4.4 10.3 - - - -
1136D ILE 3.3 0.8 - - - -
1137D PRO* 1.3 80.6 - - - +
1139D THR* 1.3 58.3 + - - +
1141D GLU* 4.3 1.8 - - - +
1142D CYS* 2.9 31.3 + - - +
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Residues in contact with THR1139 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1135D HIS 3.8 12.3 + - - -
1136D ILE 3.6 2.3 + - - -
1138D SER* 1.3 76.6 - - - +
1140D LEU* 1.3 60.4 + - - +
1142D CYS* 4.0 6.2 - - - +
1143D LEU* 2.9 29.3 + - - +
1301D ASN* 5.1 2.4 - - - +
1304D ASP* 4.1 33.4 - - - -
1305D MET* 5.3 3.2 - - - +
1308D GLN* 4.9 7.2 - - - -
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Residues in contact with LEU1140 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1004D TYR* 4.6 15.3 - - + +
1136D ILE 2.9 21.7 + - - +
1137D PRO* 3.8 8.3 - - + +
1138D SER 3.2 0.2 - - - -
1139D THR* 1.3 77.4 - - - +
1141D GLU* 1.3 58.6 + - - +
1143D LEU* 3.1 6.7 + - - +
1144D SER* 2.9 27.4 + - - -
1305D MET* 6.5 0.2 - - - -
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Residues in contact with GLU1141 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1082D THR 5.4 8.1 - - - +
1083D SER* 6.4 0.7 - - - -
1086D VAL* 4.9 12.3 - - + -
1137D PRO 2.9 18.6 + - - +
1138D SER* 4.3 1.6 - - - +
1140D LEU* 1.3 73.4 - - - +
1142D CYS* 1.3 60.4 - - - +
1144D SER* 3.9 6.6 - - - +
1145D ARG* 2.9 30.9 + - - +
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Residues in contact with CYS1142 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1138D SER 2.9 20.4 + - - +
1139D THR* 4.0 8.1 - - - +
1141D GLU* 1.3 77.8 - - - +
1143D LEU* 1.3 57.2 + - - +
1145D ARG* 3.9 5.2 - - - +
1146D SER* 2.9 31.2 + - - -
1301D ASN* 4.5 6.6 - - + +
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Residues in contact with LEU1143 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1139D THR 2.9 21.6 + - - +
1140D LEU* 3.1 7.4 + - - +
1142D CYS* 1.3 74.4 - - - +
1144D SER* 1.3 60.6 + - - +
1146D SER* 3.9 0.5 - - - -
1147D THR* 2.9 32.6 + - - -
1301D ASN* 4.2 26.4 - - + +
1305D MET* 4.5 11.7 - - + -
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Residues in contact with SER1144 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1017D VAL* 6.3 2.9 - - - -
1140D LEU 2.9 15.2 + - - -
1141D GLU* 4.0 6.7 - - - -
1143D LEU* 1.3 74.0 - - - +
1145D ARG* 1.3 61.3 + - - +
1147D THR* 4.4 2.9 - - - -
1148D LEU* 2.9 32.6 + - - +
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Residues in contact with ARG1145 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1024D HIS* 5.3 1.6 + - - -
1141D GLU 2.9 19.8 + - - +
1142D CYS* 4.0 5.2 - - - +
1144D SER* 1.3 77.5 - - - +
1146D SER* 1.3 56.3 + - - +
1148D LEU* 3.9 4.3 - - - +
1149D LEU* 2.9 31.5 + - - +
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Residues in contact with SER1146 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1142D CYS 2.9 20.2 + - - -
1143D LEU 3.9 2.9 - - - -
1144D SER 3.3 0.2 - - - -
1145D ARG* 1.3 78.5 - - - +
1147D THR* 1.3 57.9 + - - +
1149D LEU* 3.9 4.3 - - - +
1150D CYS* 2.9 30.1 + - - +
1294D TYR* 4.7 6.1 - - - +
1297D TRP* 3.9 34.5 - - - -
1298D MET* 4.3 6.0 - - - +
1301D ASN* 4.2 5.8 - - - -
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Residues in contact with THR1147 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1143D LEU 2.9 18.1 + - - -
1144D SER* 4.4 3.4 - - - -
1146D SER* 1.3 75.3 - - - +
1148D LEU* 1.3 59.9 + - - +
1150D CYS* 3.7 5.7 - - - +
1151D VAL* 2.9 33.1 + - - +
1298D MET* 5.2 5.1 - - - +
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Residues in contact with LEU1148 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1021D LEU* 5.8 8.3 - - + -
1024D HIS* 3.7 21.1 + - + -
1144D SER 2.9 22.5 + - - +
1145D ARG* 3.9 4.3 - - - +
1147D THR* 1.3 77.4 - - - +
1149D LEU* 1.3 50.9 + - - +
1151D VAL* 4.6 1.7 - - - +
1152D SER* 2.7 38.8 + - - -
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Residues in contact with LEU1149 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1024D HIS* 3.5 20.8 + - + +
1145D ARG 2.9 19.3 + - - +
1146D SER* 4.0 2.7 - - - +
1148D LEU* 1.3 75.6 - - - +
1150D CYS* 1.3 58.8 + - - +
1153D ALA* 2.9 25.1 + - - +
1294D TYR* 3.2 45.4 - - + +
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Residues in contact with CYS1150 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1146D SER 2.9 18.9 + - - +
1147D THR* 3.3 7.8 + - - +
1149D LEU* 1.3 77.2 - - - +
1151D VAL* 1.3 51.2 + - - +
1154D LEU* 2.6 38.2 + - - +
1294D TYR* 3.7 33.8 - - + +
1295D LEU* 5.9 0.2 - - - -
1298D MET* 4.5 5.8 - - + -
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Residues in contact with VAL1151 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1147D THR 2.9 15.0 + - - +
1148D LEU* 4.6 1.8 - - - +
1150D CYS* 1.3 77.8 - - - +
1152D SER* 1.3 60.5 + - - +
1154D LEU* 3.7 6.0 - - - +
1155D THR* 2.9 31.0 + - - -
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Residues in contact with SER1152 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1024D HIS* 3.6 23.6 - - - -
1028D VAL* 4.7 17.6 - - - +
1148D LEU 2.7 22.4 + - - -
1149D LEU 3.6 2.0 - - - -
1150D CYS 3.2 0.2 - - - -
1151D VAL* 1.3 78.4 - - - +
1153D ALA* 1.3 58.5 + - - +
1155D THR* 3.9 1.7 - - - -
1156D VAL* 2.9 29.7 + - - +
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Residues in contact with ALA1153 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1028D VAL* 5.3 2.7 - - + +
1149D LEU 2.9 17.8 + - - +
1152D SER* 1.3 72.1 - - - +
1154D LEU* 1.3 59.3 - - - +
1156D VAL* 3.7 9.0 - - - -
1157D ILE* 2.9 31.9 + - - +
1287D TYR* 4.1 35.5 - - + +
1291D VAL* 5.8 1.9 - - + +
1294D TYR* 3.7 20.6 - - + -
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Residues in contact with LEU1154 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1150D CYS 2.6 26.3 + - - +
1151D VAL* 3.7 7.6 - - - +
1152D SER 3.2 0.2 - - - -
1153D ALA* 1.3 78.1 - - - +
1155D THR* 1.3 58.1 + - - +
1157D ILE* 4.5 1.2 - - - +
1158D SER* 2.9 29.6 + - - -
1291D VAL* 5.9 5.8 - - + +
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Residues in contact with THR1155 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1151D VAL 2.9 17.6 + - - -
1152D SER 4.3 1.3 - - - -
1154D LEU* 1.3 74.8 - - - +
1156D VAL* 1.3 60.1 + - - +
1158D SER* 3.6 7.9 - - - -
1159D TYR* 2.9 29.3 + - - +
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Residues in contact with VAL1156 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1028D VAL* 4.3 17.9 - - + -
1152D SER 2.9 21.4 + - - +
1153D ALA* 3.8 8.7 - - - -
1154D LEU 3.3 0.2 - - - -
1155D THR* 1.3 76.9 - - - +
1157D ILE* 1.3 58.7 + - - +
1159D TYR* 3.3 6.2 + - - +
1160D VAL* 2.9 25.7 + - - +
1287D TYR* 4.8 11.0 - - + -
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Residues in contact with ILE1157 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1153D ALA 2.9 18.8 + - - +
1154D LEU* 4.5 1.1 - - - +
1156D VAL* 1.3 73.5 - - - +
1158D SER* 1.3 59.2 + - - +
1160D VAL* 3.5 10.2 - - - +
1161D THR* 3.0 25.8 + - - -
1284D GLY* 4.2 17.4 - - - +
1287D TYR* 4.0 27.9 - - + +
----------------------------------------------------------
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Residues in contact with SER1158 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1154D LEU 2.9 22.4 + - - -
1155D THR* 3.6 9.9 - - - -
1156D VAL 3.2 0.4 - - - -
1157D ILE* 1.3 77.0 - - - +
1159D TYR* 1.3 58.0 + - - +
1161D THR* 2.9 27.3 + - - +
1162D PRO 4.3 3.1 - - - +
1166D VAL* 5.1 17.3 - - - +
----------------------------------------------------------
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Residues in contact with TYR1159 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1032D TYR* 6.4 2.2 - + - -
1155D THR 2.9 18.5 + - - +
1156D VAL* 3.9 4.7 - - - +
1158D SER* 1.3 73.1 - - - +
1160D VAL* 1.3 63.7 + - - +
1161D THR 2.9 11.7 - - - +
----------------------------------------------------------
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Residues in contact with VAL1160 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1156D VAL 2.9 15.1 + - - +
1157D ILE* 3.5 16.2 - - + +
1159D TYR* 1.3 79.8 - - - +
1161D THR* 1.3 58.3 + - - +
1162D PRO* 4.0 3.5 - - - +
1270D ASN* 5.2 5.2 - - - +
1280D LEU* 4.7 22.6 - - + +
1283D LEU* 5.5 3.1 - - + -
1284D GLY* 5.3 7.6 - - - +
----------------------------------------------------------
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Residues in contact with THR1161 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1157D ILE 3.0 13.1 + - - -
1158D SER* 2.9 20.8 - - - +
1159D TYR* 2.9 17.1 - - - +
1160D VAL* 1.3 75.4 - - - +
1162D PRO* 1.3 72.2 - - - +
1165D LEU* 3.6 28.0 - - - -
1266D THR* 3.9 13.9 - - - -
1270D ASN* 6.0 0.2 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il