Contacts of the helix formed by residues 1117 - 1161 (chain F) in PDB entry 5TWV
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO1117 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1115F THR 4.7 1.6 - - - +
1116F THR* 1.3 82.9 - - - +
1118F LEU* 1.3 63.4 + - - +
1119F GLY 3.2 4.3 + - - +
1120F SER* 3.7 14.2 + - - +
1121F ILE* 3.4 22.7 + - + +
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Residues in contact with LEU1118 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
503F LEU* 5.5 6.5 - - + -
1116F THR 3.3 5.8 + - - +
1117F PRO* 1.3 70.3 - - - +
1119F GLY* 1.3 59.6 + - - +
1120F SER 3.4 0.2 - - - -
1121F ILE* 3.8 8.3 - - - -
1122F LEU* 2.9 46.5 + - + +
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Residues in contact with GLY1119 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1117F PRO* 3.2 3.6 - - - +
1118F LEU* 1.3 79.1 - - - +
1120F SER* 1.3 51.8 + - - +
1122F LEU* 5.2 0.7 - - - -
1123F ASN* 2.6 42.6 + - - +
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Residues in contact with SER1120 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1117F PRO* 3.7 18.6 + - - +
1119F GLY* 1.3 72.9 - - - +
1121F ILE* 1.3 65.6 + - - +
1123F ASN* 4.4 2.9 - - - +
1124F ARG* 2.9 35.1 + - - +
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Residues in contact with ILE1121 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1105F ILE* 6.3 2.7 - - + -
1116F THR* 4.8 13.5 - - - -
1117F PRO* 3.4 17.5 - - + +
1118F LEU* 3.5 8.7 + - - +
1119F GLY 3.3 0.4 - - - -
1120F SER* 1.3 80.5 - - - +
1122F LEU* 1.3 62.5 + - + +
1124F ARG* 4.5 0.6 - - - +
1125F PHE* 2.7 44.5 + - + +
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Residues in contact with LEU1122 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
499F THR* 4.0 34.8 - - - +
500F ASN* 5.7 0.9 - - - +
502F MET* 5.8 2.2 - - + -
503F LEU* 4.6 17.3 - - + +
1118F LEU* 2.9 36.1 + - + +
1119F GLY* 4.8 0.9 - - - +
1121F ILE* 1.3 86.6 - - + +
1123F ASN* 1.3 59.7 + - - +
1125F PHE* 4.1 16.2 - - + -
1126F SER* 2.9 34.1 + - - -
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Residues in contact with ASN1123 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1119F GLY 2.6 24.2 + - - +
1120F SER* 4.2 2.7 - - - +
1122F LEU* 1.3 75.8 - - - +
1124F ARG* 1.3 54.8 - - - +
1127F SER* 2.3 53.1 + - - +
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Residues in contact with ARG1124 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1120F SER* 2.9 21.1 + - - +
1121F ILE* 4.5 0.9 - - - +
1123F ASN* 1.3 76.7 - - - +
1125F PHE* 1.3 51.0 + - - +
1127F SER* 3.7 5.2 - - - -
1128F ASP* 2.6 40.0 + - - +
1314F ARG* 3.7 39.5 - - + +
1318F LEU* 5.9 5.8 - - + -
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Residues in contact with PHE1125 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
499F THR* 6.0 4.5 - - - -
1098F HIS* 4.8 13.7 - + - -
1101F LEU* 3.6 33.2 - - + -
1102F LEU* 4.3 24.2 - - + -
1105F ILE* 5.5 5.8 - - + -
1121F ILE* 2.7 29.9 + - + +
1122F LEU* 4.0 16.4 - - + +
1124F ARG* 1.3 78.9 - - - +
1126F SER* 1.3 63.8 + - - +
1128F ASP* 3.6 2.3 - - - +
1129F CYS* 2.9 47.6 + - - -
1318F LEU* 5.1 16.6 - - + -
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Residues in contact with SER1126 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495F ARG 5.8 0.7 - - - -
496F LEU* 5.2 9.5 - - - +
499F THR* 5.2 14.7 - - - -
1122F LEU* 2.9 22.3 + - - -
1125F PHE* 1.3 84.3 - - - +
1127F SER* 1.3 58.9 + - - +
1129F CYS* 3.2 5.5 + - - +
1130F ASN* 2.9 32.2 + - - +
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Residues in contact with SER1127 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1123F ASN* 2.3 39.6 + - - -
1124F ARG* 3.7 4.3 - - - -
1126F SER* 1.3 75.5 - - - +
1128F ASP* 1.3 59.2 + - - +
1130F ASN* 4.6 2.2 - - - +
1131F THR* 2.7 41.7 + - - +
1314F ARG* 4.7 5.4 - - - -
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Residues in contact with ASP1128 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1124F ARG 2.6 24.5 + - - +
1125F PHE* 3.6 4.0 - - - +
1127F SER* 1.3 80.0 + - - +
1129F CYS* 1.3 57.3 + - - +
1131F THR* 4.8 0.7 - - - -
1132F ILE* 2.8 37.3 + - - +
1311F ALA* 4.6 8.3 - - - +
1314F ARG* 4.6 13.2 - - + +
1315F ILE* 4.5 24.8 - - + +
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Residues in contact with CYS1129 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1097F LEU* 5.3 5.8 - - - -
1098F HIS* 4.4 29.8 - - + +
1101F LEU* 5.5 1.3 - - - -
1125F PHE* 2.9 45.0 + - - +
1126F SER* 3.2 6.5 + - - +
1128F ASP* 1.3 75.9 - - - +
1130F ASN* 1.3 58.4 + - - +
1132F ILE* 5.1 0.2 - - - -
1133F ASP* 2.6 41.2 + - + +
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Residues in contact with ASN1130 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
492F SER* 5.5 10.3 - - - -
1126F SER* 2.9 17.8 + - - +
1127F SER* 4.7 2.0 - - - +
1129F CYS* 1.3 76.9 - - - +
1131F THR* 1.3 58.7 + - - +
1133F ASP* 4.4 2.0 - - - +
1134F GLN* 2.8 34.7 + - - +
1135F HIS* 5.5 0.4 - - - -
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Residues in contact with THR1131 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1127F SER* 2.7 24.4 + - - -
1128F ASP* 4.8 0.7 - - - -
1130F ASN* 1.3 77.2 - - - +
1132F ILE* 1.3 58.9 + - - +
1135F HIS* 2.9 45.6 + - - +
1311F ALA* 5.6 7.6 - - - -
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Residues in contact with ILE1132 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1128F ASP* 2.8 24.7 + - + +
1131F THR* 1.3 77.7 - - - +
1133F ASP* 1.3 58.6 + - - +
1136F ILE* 2.7 42.8 + - + +
1137F PRO* 4.2 0.9 - - - +
1311F ALA* 4.8 22.8 - - + +
1312F VAL* 5.3 4.5 - - + +
1315F ILE* 5.6 5.2 - - + -
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Residues in contact with ASP1133 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
536F PHE* 5.6 6.2 - - - +
1090F GLY* 5.6 8.3 - - - +
1093F VAL* 6.1 4.3 - - + +
1094F ALA* 5.7 11.9 - - + -
1129F CYS* 2.6 24.3 + - - +
1130F ASN* 4.4 1.1 - - - +
1132F ILE* 1.3 76.7 - - - +
1134F GLN* 1.3 59.6 + - - +
1136F ILE 4.8 0.2 - - - -
1137F PRO* 4.4 9.6 - - - +
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Residues in contact with GLN1134 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
485F GLN* 5.9 5.8 - - - +
488F THR* 5.6 6.4 - - - -
536F PHE* 5.5 9.1 - - - +
539F TYR* 4.9 14.8 - - - +
1130F ASN 2.8 22.6 + - - +
1133F ASP* 1.3 81.6 - - - +
1135F HIS* 1.3 84.0 + - + +
1136F ILE 3.7 0.7 - - - -
1137F PRO* 4.4 5.7 - - - +
1138F SER* 5.4 3.6 - - - -
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Residues in contact with HIS1135 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1130F ASN 4.7 0.4 - - - -
1131F THR* 2.9 33.4 + - - +
1134F GLN* 1.3 102.0 - - + +
1136F ILE* 1.3 66.6 + - - +
1137F PRO* 3.6 1.6 - - - -
1138F SER* 4.0 7.2 + - - +
1139F THR* 3.8 18.9 + - - -
1308F GLN* 5.2 3.9 - - - +
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Residues in contact with ILE1136 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1004F TYR* 4.9 13.9 - - + +
1131F THR 4.0 0.6 + - - -
1132F ILE* 2.7 32.4 + - + +
1135F HIS* 1.3 79.6 - - - +
1137F PRO* 1.4 62.2 - - + +
1138F SER 3.3 0.2 + - - -
1139F THR* 3.9 0.9 - - - -
1140F LEU* 2.9 30.1 + - - +
1308F GLN* 5.3 11.0 - - + +
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Residues in contact with PRO1137 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
540F THR* 6.4 1.6 - - - -
1086F VAL* 3.8 29.3 - - + +
1089F THR* 5.8 2.9 - - - -
1090F GLY* 5.4 13.7 - - - +
1132F ILE 4.2 4.0 - - - +
1133F ASP* 4.4 8.5 - - - +
1134F GLN 4.4 8.7 - - - +
1135F HIS 3.9 1.3 - - - -
1136F ILE* 1.4 94.3 - - + +
1138F SER* 1.3 57.7 + - - +
1140F LEU* 3.7 6.7 - - + -
1141F GLU* 2.9 32.1 + - - +
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Residues in contact with SER1138 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
543F SER* 6.2 4.5 - - - -
1134F GLN 5.4 2.5 - - - -
1135F HIS* 4.4 11.0 - - - -
1136F ILE 3.3 1.0 - - - -
1137F PRO* 1.3 80.9 - - - +
1139F THR* 1.3 58.8 + - - +
1141F GLU* 4.3 1.6 - - - +
1142F CYS* 2.9 30.9 + - - +
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Residues in contact with THR1139 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1135F HIS 3.8 12.1 + - - -
1136F ILE 3.6 2.9 + - - -
1138F SER* 1.3 76.7 - - - +
1140F LEU* 1.3 60.1 + - - +
1142F CYS* 4.0 6.6 - - - +
1143F LEU* 2.9 29.7 + - - +
1301F ASN* 5.1 2.4 - - - +
1304F ASP* 4.1 32.9 - - - +
1305F MET* 5.1 3.0 - - - +
1308F GLN* 4.9 7.0 - - - -
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Residues in contact with LEU1140 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1004F TYR* 4.6 16.2 - - + +
1136F ILE 2.9 20.8 + - - +
1137F PRO* 3.8 7.9 - - + +
1138F SER 3.2 0.2 - - - -
1139F THR* 1.3 76.3 - - - +
1141F GLU* 1.3 59.1 + - - +
1143F LEU* 3.1 7.1 + - - +
1144F SER* 2.9 27.5 + - - -
1305F MET* 6.5 0.2 - - - -
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Residues in contact with GLU1141 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1082F THR 5.4 8.1 - - - +
1083F SER* 6.4 0.4 - - - -
1086F VAL* 4.9 12.3 - - + -
1137F PRO 2.9 17.9 + - - +
1138F SER* 4.3 1.8 - - - +
1140F LEU* 1.3 73.8 - - - +
1142F CYS* 1.3 61.1 + - - +
1144F SER* 3.9 6.6 - - - +
1145F ARG* 2.9 30.5 + - - +
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Residues in contact with CYS1142 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1138F SER 2.9 21.6 + - - +
1139F THR* 4.0 7.9 - - - +
1141F GLU* 1.3 76.6 - - - +
1143F LEU* 1.3 58.4 + - - +
1145F ARG* 3.9 5.4 - - - +
1146F SER* 2.9 30.8 + - - -
1301F ASN* 4.5 6.1 - - + +
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Residues in contact with LEU1143 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1139F THR 2.9 20.4 + - - +
1140F LEU* 3.1 7.4 + - - +
1142F CYS* 1.3 75.0 - - - +
1144F SER* 1.3 59.1 + - - +
1146F SER* 3.9 0.7 - - - -
1147F THR* 2.9 32.6 + - - -
1301F ASN* 4.2 27.1 - - + +
1305F MET* 4.5 11.9 - - + -
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Residues in contact with SER1144 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1017F VAL* 6.3 2.9 - - - -
1140F LEU 2.9 15.2 + - - -
1141F GLU* 4.0 7.0 - - - -
1143F LEU* 1.3 73.5 - - - +
1145F ARG* 1.3 60.1 + - - +
1147F THR* 4.4 3.5 - - - -
1148F LEU* 2.9 32.7 + - - +
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Residues in contact with ARG1145 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1024F HIS* 5.3 1.4 + - - -
1141F GLU 2.9 19.3 + - - +
1142F CYS* 4.0 5.8 - - - +
1144F SER* 1.3 78.3 - - - +
1146F SER* 1.3 56.9 + - - +
1148F LEU* 3.9 3.6 - - - +
1149F LEU* 2.9 31.9 + - - +
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Residues in contact with SER1146 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1142F CYS 2.9 19.9 + - - -
1143F LEU 3.9 2.5 - - - -
1145F ARG* 1.3 77.4 - - - +
1147F THR* 1.3 58.1 + - - +
1149F LEU* 3.9 4.1 - - - +
1150F CYS* 2.9 29.3 + - - +
1294F TYR* 4.7 6.8 - - - +
1297F TRP* 3.9 34.3 - - - -
1298F MET* 4.3 7.1 - - - +
1301F ASN* 4.2 5.6 - - - -
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Residues in contact with THR1147 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1143F LEU 2.9 18.7 + - - -
1144F SER* 4.4 2.9 - - - -
1146F SER* 1.3 72.9 - - - +
1148F LEU* 1.3 60.3 + - - +
1150F CYS* 3.7 5.7 - - - +
1151F VAL* 2.9 32.2 + - - +
1298F MET* 5.2 4.7 - - - +
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Residues in contact with LEU1148 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1021F LEU* 5.8 7.6 - - + -
1024F HIS* 3.7 22.2 + - + -
1144F SER 2.9 22.7 + - - +
1145F ARG* 3.9 4.9 - - - +
1147F THR* 1.3 77.6 - - - +
1149F LEU* 1.3 50.7 + - - +
1151F VAL* 4.6 1.5 - - - +
1152F SER* 2.7 38.3 + - - -
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Residues in contact with LEU1149 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1024F HIS* 3.5 23.2 + - + +
1145F ARG 2.9 18.8 + - - +
1146F SER* 4.0 2.9 - - - +
1148F LEU* 1.3 75.5 - - - +
1150F CYS* 1.3 59.4 + - - +
1153F ALA* 2.9 25.5 + - - +
1294F TYR* 3.2 44.2 - - + +
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Residues in contact with CYS1150 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1146F SER 2.9 20.6 + - - +
1147F THR* 3.3 7.4 + - - +
1149F LEU* 1.3 77.2 - - - +
1151F VAL* 1.3 51.2 + - - +
1154F LEU* 2.6 39.1 + - - +
1294F TYR* 3.7 34.1 - - + +
1295F LEU* 5.9 0.2 - - - -
1298F MET* 4.5 5.6 - - + -
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Residues in contact with VAL1151 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1147F THR 2.9 15.6 + - - +
1148F LEU* 4.6 1.8 - - - +
1150F CYS* 1.3 75.7 - - - +
1152F SER* 1.3 58.6 + - - +
1154F LEU* 3.8 6.3 - - - -
1155F THR* 2.9 31.4 + - - -
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Residues in contact with SER1152 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1024F HIS* 3.6 24.0 - - - -
1028F VAL* 4.7 16.7 - - - +
1148F LEU 2.7 23.6 + - - -
1149F LEU 3.6 2.0 - - - -
1151F VAL* 1.3 77.2 - - - +
1153F ALA* 1.3 59.2 + - - +
1155F THR* 3.9 1.4 - - - -
1156F VAL* 2.9 29.1 + - - +
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Residues in contact with ALA1153 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1028F VAL* 5.3 2.9 - - + +
1149F LEU 2.9 17.3 + - - +
1152F SER* 1.3 73.4 - - - +
1154F LEU* 1.3 59.8 + - - +
1156F VAL* 3.7 8.3 - - - -
1157F ILE* 2.9 31.9 + - - +
1287F TYR* 4.1 34.8 - - + +
1291F VAL* 5.8 2.0 - - + +
1294F TYR* 3.7 20.6 - - + +
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Residues in contact with LEU1154 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1150F CYS 2.6 25.3 + - - +
1151F VAL* 3.7 7.9 - - - +
1152F SER 3.2 0.2 - - - -
1153F ALA* 1.3 76.5 - - - +
1155F THR* 1.3 57.9 + - - +
1157F ILE* 3.9 1.3 - - - +
1158F SER* 2.9 29.3 + - - -
1291F VAL* 5.9 6.2 - - + +
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Residues in contact with THR1155 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1151F VAL 2.9 17.6 + - - -
1152F SER* 4.3 1.8 - - - -
1154F LEU* 1.3 74.8 - - - +
1156F VAL* 1.3 58.8 + - - +
1158F SER* 3.6 7.5 - - - -
1159F TYR* 2.9 29.5 + - - +
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Residues in contact with VAL1156 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1028F VAL* 4.3 18.2 - - + -
1152F SER 2.9 21.2 + - - +
1153F ALA* 3.8 9.0 - - - -
1154F LEU 3.3 0.6 - - - -
1155F THR* 1.3 76.9 - - - +
1157F ILE* 1.3 58.9 + - - +
1159F TYR* 3.3 6.7 + - - +
1160F VAL* 2.9 25.0 + - - +
1287F TYR* 4.8 10.8 - - + -
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Residues in contact with ILE1157 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1153F ALA 2.9 18.5 + - - +
1154F LEU* 4.5 1.3 - - - +
1156F VAL* 1.3 73.8 - - - +
1158F SER* 1.3 60.1 + - - +
1160F VAL* 3.5 10.3 - - - +
1161F THR* 3.0 26.2 + - - -
1283F LEU 5.8 0.2 - - - -
1284F GLY* 4.2 17.7 - - - +
1287F TYR* 4.0 27.3 - - + +
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Residues in contact with SER1158 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1154F LEU 2.9 23.3 + - - -
1155F THR* 3.6 10.8 - - - -
1157F ILE* 1.3 76.7 - - - +
1159F TYR* 1.3 58.1 + - - +
1161F THR* 2.9 27.8 + - - +
1162F PRO 4.3 2.9 - - - +
1166F VAL* 5.1 17.4 - - - +
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Residues in contact with TYR1159 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1032F TYR* 6.4 2.7 - + - -
1155F THR 2.9 17.7 + - - +
1156F VAL* 3.9 4.5 - - - +
1158F SER* 1.3 73.7 - - - +
1160F VAL* 1.3 63.7 + - - +
1161F THR 2.9 12.3 - - - +
----------------------------------------------------------
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Residues in contact with VAL1160 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1156F VAL 2.9 14.9 + - - +
1157F ILE* 3.5 16.2 - - + +
1158F SER 3.2 0.2 - - - -
1159F TYR* 1.3 79.2 - - - +
1161F THR* 1.3 58.2 + - - +
1162F PRO* 4.0 3.8 - - - +
1270F ASN* 5.2 5.4 - - - +
1280F LEU* 4.7 22.8 - - + +
1283F LEU* 5.5 3.6 - - + -
1284F GLY* 5.3 8.1 - - - +
----------------------------------------------------------
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Residues in contact with THR1161 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1157F ILE 3.0 13.1 + - - -
1158F SER* 2.9 21.2 - - - +
1159F TYR* 2.9 16.9 - - - +
1160F VAL* 1.3 75.5 - - - +
1162F PRO* 1.3 70.8 - - - +
1165F LEU* 3.6 27.1 - - - -
1266F THR* 3.9 14.8 - - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il