Contacts of the helix formed by residues 1117 - 1161 (chain H) in PDB entry 5TWV
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO1117 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1115H THR 4.7 1.6 - - - +
1116H THR* 1.3 83.0 - - - +
1118H LEU* 1.3 64.1 + - - +
1119H GLY 3.2 4.5 + - - +
1120H SER* 3.7 12.9 + - - +
1121H ILE* 3.4 22.3 + - + +
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Residues in contact with LEU1118 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
503H LEU* 5.5 7.0 - - + -
1116H THR 3.3 5.4 + - - +
1117H PRO* 1.3 71.2 - - - +
1119H GLY* 1.3 58.9 + - - +
1120H SER 3.4 0.2 - - - -
1121H ILE* 3.8 9.0 - - - -
1122H LEU* 2.9 45.4 + - + +
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Residues in contact with GLY1119 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1117H PRO* 3.2 3.6 - - - +
1118H LEU* 1.3 78.9 - - - +
1120H SER* 1.3 51.1 + - - +
1122H LEU* 5.2 0.7 - - - -
1123H ASN* 2.6 43.0 + - - +
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Residues in contact with SER1120 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1117H PRO* 3.7 18.6 + - - +
1118H LEU 3.4 0.2 - - - -
1119H GLY* 1.3 73.8 - - - +
1121H ILE* 1.3 65.7 + - - +
1123H ASN* 4.4 2.9 - - - -
1124H ARG* 2.9 35.5 + - - +
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Residues in contact with ILE1121 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1105H ILE* 6.3 3.1 - - + -
1116H THR* 4.8 13.9 - - - -
1117H PRO 3.4 17.5 - - - +
1118H LEU* 3.5 9.1 + - - +
1119H GLY 3.3 0.4 - - - -
1120H SER* 1.3 80.4 - - - +
1122H LEU* 1.3 62.1 + - + +
1124H ARG* 4.5 0.8 - - - +
1125H PHE* 2.7 44.8 + - + +
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Residues in contact with LEU1122 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
499H THR* 4.0 35.0 - - - +
500H ASN* 5.8 0.9 - - - -
502H MET* 5.8 2.0 - - + -
503H LEU* 4.6 17.9 - - + +
1118H LEU* 2.9 35.8 + - + +
1119H GLY* 4.8 1.1 - - - +
1121H ILE* 1.3 85.0 - - + +
1123H ASN* 1.3 60.3 + - - +
1125H PHE* 4.1 15.7 - - + -
1126H SER* 2.9 34.1 + - - -
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Residues in contact with ASN1123 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1119H GLY 2.6 25.2 + - - +
1120H SER* 4.2 2.7 - - - +
1122H LEU* 1.3 74.7 - - - +
1124H ARG* 1.3 54.7 + - - +
1127H SER* 2.3 52.8 + - - -
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Residues in contact with ARG1124 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1120H SER* 2.9 21.1 + - - +
1121H ILE* 4.5 0.7 - - - +
1123H ASN* 1.3 77.1 - - - +
1125H PHE* 1.3 51.1 + - - +
1127H SER* 3.7 4.0 - - - -
1128H ASP* 2.6 40.4 + - - +
1314H ARG* 3.7 39.3 - - + +
1318H LEU* 5.9 6.3 - - + -
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Residues in contact with PHE1125 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
499H THR* 6.0 4.5 - - - -
1098H HIS* 4.8 12.1 - + - -
1101H LEU* 3.6 32.5 - - + -
1102H LEU* 4.3 23.8 - - + -
1105H ILE* 5.5 6.3 - - + -
1121H ILE* 2.7 27.7 + - + +
1122H LEU* 4.0 16.4 - - + +
1124H ARG* 1.3 77.2 - - - +
1126H SER* 1.3 66.4 + - - +
1128H ASP* 3.6 2.3 - - - +
1129H CYS* 2.9 47.1 + - - -
1318H LEU* 5.1 16.8 - - + +
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Residues in contact with SER1126 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495H ARG 5.8 0.5 - - - -
496H LEU* 5.2 9.4 - - - +
499H THR* 5.2 15.1 - - - -
1122H LEU* 2.9 22.7 + - - -
1125H PHE* 1.3 83.0 - - - +
1127H SER* 1.3 59.6 + - - +
1129H CYS* 3.2 6.4 + - - +
1130H ASN* 2.9 31.9 + - - +
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Residues in contact with SER1127 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1123H ASN* 2.3 40.7 + - - -
1124H ARG* 3.7 4.9 - - - -
1126H SER* 1.3 74.8 - - - +
1128H ASP* 1.3 59.0 + - - +
1130H ASN* 4.6 2.5 - - - +
1131H THR* 2.7 41.8 + - - +
1314H ARG* 4.7 5.7 - - - -
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Residues in contact with ASP1128 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1124H ARG 2.6 24.8 + - - +
1125H PHE* 3.6 4.3 - - - +
1127H SER* 1.3 78.7 + - - +
1129H CYS* 1.3 58.0 + - - +
1131H THR* 4.8 0.4 - - - -
1132H ILE* 2.8 37.0 + - - +
1311H ALA* 4.6 7.6 - - - +
1314H ARG* 4.6 12.6 - - + +
1315H ILE* 4.5 25.5 - - + +
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Residues in contact with CYS1129 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1097H LEU* 5.3 5.2 - - - -
1098H HIS* 4.4 31.2 - - + +
1101H LEU* 5.5 1.3 - - - -
1125H PHE* 2.9 46.8 + - - +
1126H SER* 3.2 6.3 + - - +
1128H ASP* 1.3 75.2 - - - +
1130H ASN* 1.3 57.4 + - - +
1132H ILE* 5.1 0.2 - - - -
1133H ASP* 2.6 41.0 + - - +
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Residues in contact with ASN1130 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
492H SER* 5.5 11.2 - - - -
1126H SER* 2.9 17.7 + - - +
1127H SER* 4.7 2.2 - - - +
1129H CYS* 1.3 76.3 - - - +
1131H THR* 1.3 58.2 + - - +
1133H ASP* 4.7 1.3 - - - -
1134H GLN* 2.8 35.0 + - - +
1135H HIS* 5.5 0.2 - - - -
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Residues in contact with THR1131 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1127H SER* 2.7 24.0 + - - -
1128H ASP* 4.8 0.9 - - - -
1130H ASN* 1.3 76.8 - - - +
1132H ILE* 1.3 59.0 + - - +
1135H HIS* 2.9 45.6 + - - +
1311H ALA* 5.6 7.6 - - - -
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Residues in contact with ILE1132 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1128H ASP* 2.8 24.8 + - + +
1131H THR* 1.3 78.4 - - - +
1133H ASP* 1.3 57.4 + - - +
1136H ILE* 2.7 42.4 + - + +
1137H PRO* 4.2 0.9 - - - +
1311H ALA* 4.8 22.7 - - + +
1312H VAL* 5.3 4.7 - - + +
1315H ILE* 5.6 4.3 - - + -
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Residues in contact with ASP1133 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
536H PHE* 5.6 5.5 - - - +
1090H GLY* 5.6 8.2 - - - +
1093H VAL* 6.1 4.0 - - + +
1094H ALA* 5.7 11.4 - - + +
1129H CYS* 2.6 24.1 + - + +
1130H ASN* 4.4 1.8 - - - +
1132H ILE* 1.3 78.2 - - - +
1134H GLN* 1.3 60.4 + - - +
1136H ILE 4.8 0.2 - - - -
1137H PRO* 4.4 8.6 - - - +
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Residues in contact with GLN1134 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
485H GLN* 5.9 5.0 - - - +
488H THR* 5.6 6.1 - - - -
536H PHE* 5.5 8.1 - - - +
539H TYR* 4.9 15.2 - - - +
1130H ASN 2.8 21.9 + - - +
1133H ASP* 1.3 81.1 - - - +
1135H HIS* 1.3 84.5 + - + +
1136H ILE 3.7 0.7 - - - -
1137H PRO* 4.4 6.0 - - - +
1138H SER* 5.4 3.5 - - - -
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Residues in contact with HIS1135 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1130H ASN 4.7 0.4 - - - -
1131H THR* 2.9 32.4 + - - +
1134H GLN* 1.3 101.3 - - + +
1136H ILE* 1.3 66.5 + - - +
1137H PRO 3.6 0.9 - - - -
1138H SER* 4.0 7.5 + - - +
1139H THR* 3.8 18.9 + - - -
1308H GLN* 5.2 3.7 - - - +
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Residues in contact with ILE1136 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1004H TYR* 4.9 14.6 - - + +
1131H THR 4.0 0.2 + - - -
1132H ILE* 2.7 33.0 + - + +
1135H HIS* 1.3 78.8 - - - +
1137H PRO* 1.4 61.1 - - + +
1138H SER 3.3 0.2 + - - -
1139H THR* 3.6 1.4 + - - -
1140H LEU* 2.9 30.1 + - - +
1308H GLN* 5.3 10.5 - - + +
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Residues in contact with PRO1137 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
540H THR* 6.4 1.3 - - - -
1086H VAL* 3.8 28.1 - - + +
1089H THR* 5.8 3.1 - - - -
1090H GLY* 5.4 14.1 - - - +
1132H ILE 4.2 3.6 - - - +
1133H ASP* 4.4 8.3 - - - +
1134H GLN 4.4 8.7 - - - +
1135H HIS 3.9 1.6 - - - -
1136H ILE* 1.4 92.5 - - + +
1138H SER* 1.3 57.9 + - - +
1140H LEU* 4.0 7.0 - - + -
1141H GLU* 2.9 32.4 + - - +
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Residues in contact with SER1138 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
543H SER* 6.2 4.5 - - - -
1134H GLN 5.4 2.9 - - - -
1135H HIS* 4.4 11.0 - - - -
1136H ILE 3.3 1.0 - - - -
1137H PRO* 1.3 80.0 - - - +
1139H THR* 1.3 57.7 + - - +
1141H GLU* 4.2 1.5 - - - +
1142H CYS* 2.9 30.5 + - - +
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Residues in contact with THR1139 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1135H HIS 3.8 12.1 + - - -
1136H ILE 3.6 2.5 + - - -
1138H SER* 1.3 77.7 - - - +
1140H LEU* 1.3 60.1 + - - +
1142H CYS* 4.0 6.4 - - - +
1143H LEU* 2.9 29.3 + - - +
1301H ASN* 5.1 2.4 - - - +
1304H ASP* 4.1 33.4 - - - -
1305H MET* 5.3 3.1 - - - +
1308H GLN* 4.9 7.6 - - - -
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Residues in contact with LEU1140 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1004H TYR* 4.6 15.7 - - + +
1136H ILE 2.9 21.3 + - - +
1137H PRO* 3.8 8.1 - - + +
1139H THR* 1.3 76.3 - - - +
1141H GLU* 1.3 59.3 + - - +
1143H LEU* 3.1 6.9 + - - +
1144H SER* 2.9 27.9 + - - -
1305H MET* 6.5 0.4 - - - -
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Residues in contact with GLU1141 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1082H THR 5.4 8.1 - - - +
1083H SER* 6.4 0.7 - - - -
1086H VAL* 4.9 11.9 - - + -
1137H PRO 2.9 18.3 + - - +
1138H SER* 4.3 1.6 - - - +
1140H LEU* 1.3 74.3 - - - +
1142H CYS* 1.3 61.4 + - - +
1144H SER* 3.9 6.0 - - - +
1145H ARG* 2.9 30.7 + - - +
----------------------------------------------------------
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Residues in contact with CYS1142 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1138H SER 2.9 21.3 + - - +
1139H THR* 4.0 7.6 - - - +
1141H GLU* 1.3 77.0 - - - +
1143H LEU* 1.3 56.4 + - - +
1145H ARG* 3.9 5.2 - - - +
1146H SER* 2.9 31.5 + - - -
1301H ASN* 4.5 6.8 - - + +
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Residues in contact with LEU1143 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1139H THR 2.9 20.6 + - - +
1140H LEU* 3.1 7.2 + - - +
1142H CYS* 1.3 75.5 - - - +
1144H SER* 1.3 58.7 + - - +
1146H SER* 3.9 0.9 - - - -
1147H THR* 2.9 32.4 + - - -
1301H ASN* 4.2 25.8 - - + +
1305H MET* 4.5 11.7 - - + -
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Residues in contact with SER1144 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1017H VAL* 6.3 3.1 - - - -
1140H LEU 2.9 15.1 + - - -
1141H GLU* 4.0 6.7 - - - -
1143H LEU* 1.3 74.7 - - - +
1145H ARG* 1.3 61.2 + - - +
1147H THR* 4.4 2.6 - - - -
1148H LEU* 2.9 33.3 + - - +
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Residues in contact with ARG1145 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1024H HIS* 5.3 1.2 + - - -
1141H GLU 2.9 19.6 + - - +
1142H CYS* 4.0 5.6 - - - +
1144H SER* 1.3 79.2 - - - +
1146H SER* 1.3 57.5 + - - +
1148H LEU* 3.9 3.5 - - - +
1149H LEU* 2.9 32.4 + - - +
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Residues in contact with SER1146 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1142H CYS 2.9 20.2 + - - -
1143H LEU 3.9 2.7 - - - -
1145H ARG* 1.3 79.1 - - - +
1147H THR* 1.3 56.5 + - - +
1149H LEU* 3.5 3.8 + - - +
1150H CYS* 2.9 30.4 + - - +
1294H TYR* 4.7 6.3 - - - +
1297H TRP* 3.9 33.4 - - - -
1298H MET* 4.3 6.4 - - - +
1301H ASN* 4.2 5.4 - - - -
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Residues in contact with THR1147 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1143H LEU 2.9 18.1 + - - -
1144H SER* 4.4 2.9 - - - -
1146H SER* 1.3 74.7 - - - +
1148H LEU* 1.3 61.5 + - - +
1150H CYS* 3.7 5.7 - - - +
1151H VAL* 2.9 32.6 + - - +
1298H MET* 5.2 4.5 - - - +
----------------------------------------------------------
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Residues in contact with LEU1148 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1021H LEU* 5.8 8.3 - - + -
1024H HIS* 3.7 20.7 + - + -
1144H SER 2.9 22.0 + - - +
1145H ARG* 3.9 4.9 - - - +
1147H THR* 1.3 78.2 - - - +
1149H LEU* 1.3 50.7 + - - +
1151H VAL* 4.6 2.0 - - - +
1152H SER* 2.7 38.5 + - - -
----------------------------------------------------------
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Residues in contact with LEU1149 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1024H HIS* 3.5 22.8 + - + +
1145H ARG 2.9 19.0 + - - +
1146H SER* 4.0 3.4 - - - +
1148H LEU* 1.3 75.8 - - - +
1150H CYS* 1.3 58.8 + - - +
1152H SER* 3.6 0.6 - - - -
1153H ALA 2.9 25.3 + - - -
1294H TYR* 3.2 44.5 - - + +
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Residues in contact with CYS1150 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1146H SER 2.9 19.7 + - - +
1147H THR* 3.3 7.4 + - - +
1149H LEU* 1.3 76.6 - - - +
1151H VAL* 1.3 51.7 + - - +
1154H LEU* 2.6 38.4 + - - +
1294H TYR* 3.7 33.5 - - + +
1295H LEU* 5.9 0.2 - - - -
1298H MET* 4.5 5.4 - - + -
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Residues in contact with VAL1151 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1147H THR 2.9 16.4 + - - +
1148H LEU* 4.6 1.3 - - - +
1150H CYS* 1.3 77.0 - - - +
1152H SER* 1.3 58.0 + - - +
1154H LEU* 3.8 6.3 - - - -
1155H THR* 2.9 31.9 + - - -
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Residues in contact with SER1152 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1024H HIS* 3.6 24.0 - - - -
1028H VAL* 4.7 16.5 - - - +
1148H LEU 2.7 24.0 + - - -
1149H LEU* 3.6 2.2 - - - -
1150H CYS 3.2 0.2 - - - -
1151H VAL* 1.3 76.9 - - - +
1153H ALA* 1.3 58.9 + - - +
1155H THR* 3.9 1.6 - - - -
1156H VAL* 2.9 29.3 + - - +
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Residues in contact with ALA1153 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1028H VAL* 5.3 1.8 - - + +
1149H LEU 2.9 18.6 + - - +
1152H SER* 1.3 71.7 - - - +
1154H LEU* 1.3 59.7 + - - +
1156H VAL* 3.7 9.0 - - - -
1157H ILE* 2.9 31.7 + - - +
1287H TYR* 4.1 35.0 - - + +
1291H VAL* 5.8 2.6 - - + +
1294H TYR* 3.7 20.2 - - + +
----------------------------------------------------------
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Residues in contact with LEU1154 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1150H CYS 2.6 25.7 + - - +
1151H VAL* 3.7 7.9 - - - +
1152H SER 3.2 0.4 - - - -
1153H ALA* 1.3 77.1 - - - +
1155H THR* 1.3 58.2 + - - +
1157H ILE* 3.9 1.5 - - - +
1158H SER* 2.9 29.0 + - - -
1291H VAL* 5.9 6.0 - - + +
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Residues in contact with THR1155 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1151H VAL 2.9 17.4 + - - -
1152H SER* 4.3 1.3 - - - -
1154H LEU* 1.3 74.1 - - - +
1156H VAL* 1.3 60.7 + - - +
1158H SER* 3.6 7.9 - - - -
1159H TYR* 2.9 29.1 + - - +
----------------------------------------------------------
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Residues in contact with VAL1156 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1028H VAL* 4.3 17.3 - - + -
1152H SER 2.9 20.5 + - - +
1153H ALA* 3.8 9.4 - - - -
1154H LEU 3.3 0.2 - - - -
1155H THR* 1.3 77.4 - - - +
1157H ILE* 1.3 58.9 + - - +
1159H TYR* 3.3 6.0 + - - +
1160H VAL* 2.9 25.9 + - - +
1287H TYR* 4.8 10.1 - - + -
----------------------------------------------------------
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Residues in contact with ILE1157 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1153H ALA 2.9 18.3 + - - +
1154H LEU* 4.5 1.1 - - - +
1156H VAL* 1.3 74.5 - - - +
1158H SER* 1.3 59.8 + - - +
1159H TYR 3.4 0.2 - - - -
1160H VAL* 3.5 10.0 - - - +
1161H THR* 3.0 25.6 + - - -
1283H LEU 5.8 0.2 - - - -
1284H GLY* 4.2 17.5 - - - +
1287H TYR* 4.0 27.9 - - + +
----------------------------------------------------------
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Residues in contact with SER1158 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1154H LEU 2.9 22.4 + - - -
1155H THR* 3.6 10.1 - - - -
1156H VAL 3.2 0.2 - - - -
1157H ILE* 1.3 78.1 - - - +
1159H TYR* 1.3 59.4 + - - +
1161H THR* 2.9 28.2 + - - +
1162H PRO 4.3 3.1 - - - +
1166H VAL* 5.1 16.8 - - - +
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Residues in contact with TYR1159 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1032H TYR* 6.4 2.2 - + - -
1155H THR 2.9 18.0 + - - +
1156H VAL* 3.9 4.3 - - - +
1158H SER* 1.3 74.7 - - - +
1160H VAL* 1.3 63.5 + - - +
1161H THR 2.9 12.0 - - - +
----------------------------------------------------------
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Residues in contact with VAL1160 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1156H VAL 2.9 14.7 + - - +
1157H ILE* 3.5 15.7 - - + +
1158H SER 3.2 0.4 - - - -
1159H TYR* 1.3 80.3 - - - +
1161H THR* 1.3 58.9 + - - +
1162H PRO* 4.0 3.3 - - - +
1270H ASN* 5.2 5.2 - - - +
1280H LEU* 4.7 22.8 - - + +
1283H LEU* 5.5 3.4 - - + -
1284H GLY* 5.3 7.0 - - - +
----------------------------------------------------------
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Residues in contact with THR1161 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1157H ILE 3.0 14.0 + - - -
1158H SER* 2.9 20.4 - - - +
1159H TYR* 2.9 17.4 - - - +
1160H VAL* 1.3 75.7 - - - +
1162H PRO* 1.3 72.5 - - - +
1165H LEU* 3.6 27.8 - - - -
1266H THR* 3.9 13.5 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il