Contacts of the helix formed by residues 1220 - 1273 (chain H) in PDB entry 5TWV
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU1220 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
400H MET* 5.7 11.3 - - + +
1214H ILE* 4.5 16.6 - - + +
1217H PHE* 3.8 12.1 + - - +
1218H ARG 3.7 4.8 + - - -
1219H TYR* 1.3 71.2 - - - +
1221H ALA* 1.3 61.4 + - - +
1222H ARG 3.2 3.0 + - - -
1223H PHE* 3.6 8.6 + - - +
1224H GLN* 3.5 13.9 + - - +
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Residues in contact with ALA1221 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1219H TYR* 3.2 4.9 - - + +
1220H GLU* 1.3 76.4 - - - +
1222H ARG* 1.3 59.4 + - - +
1224H GLN* 3.4 13.6 - - + +
1225H GLN* 2.9 33.8 + - - +
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Residues in contact with ARG1222 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
791H GLU* 4.7 19.7 - - + -
1219H TYR* 3.6 18.3 + - + +
1220H GLU 3.2 1.4 - - - -
1221H ALA* 1.3 76.4 - - - +
1223H PHE* 1.3 58.5 + - - +
1225H GLN* 3.5 16.0 - - - +
1226H LYS* 2.9 31.4 + - - +
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Residues in contact with PHE1223 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396H TYR* 5.3 4.5 - + + -
400H MET* 6.3 3.6 - - + -
1203H HIS* 3.2 56.8 - + + -
1204H PHE* 5.0 0.4 - + - -
1206H GLU* 5.8 2.0 - - + -
1207H THR* 3.7 21.5 - - - -
1219H TYR 5.1 0.2 + - - -
1220H GLU* 3.6 8.1 + - - +
1222H ARG* 1.3 77.8 - - - +
1224H GLN* 1.3 51.7 + - - +
1226H LYS* 4.3 7.0 - - + -
1227H LEU* 2.6 66.1 + - + +
1230H TYR* 5.5 2.9 - + - -
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Residues in contact with GLN1224 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397H ASN* 6.3 4.3 - - + -
1220H GLU 3.5 5.7 + - - +
1221H ALA* 3.2 23.6 + - + +
1222H ARG 3.1 1.0 - - - -
1223H PHE* 1.3 79.3 - - - +
1225H GLN* 1.3 59.1 + - - +
1227H LEU* 3.4 14.6 - - + +
1228H LEU* 2.9 27.3 + - - +
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Residues in contact with GLN1225 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1221H ALA* 2.9 19.3 + - - +
1222H ARG* 3.5 15.4 + - - +
1224H GLN* 1.3 75.0 - - - +
1226H LYS* 1.3 64.0 + - + +
1228H LEU* 3.3 12.9 + - + +
1229H GLU* 2.9 25.8 + - - +
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Residues in contact with LYS1226 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1222H ARG 2.9 20.6 + - - +
1223H PHE* 4.3 6.7 - - + +
1225H GLN* 1.3 76.2 - - + +
1227H LEU* 1.3 59.4 + - - +
1229H GLU* 2.9 10.6 + - - +
1230H TYR* 2.9 45.5 + - + -
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Residues in contact with LEU1227 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392H GLN 5.3 2.5 - - - +
393H THR* 5.6 5.4 - - - +
396H TYR* 3.7 33.4 - - + +
397H ASN 5.2 1.1 - - - +
1203H HIS* 3.5 26.0 - - + -
1204H PHE* 3.6 18.4 - - + -
1223H PHE* 2.6 43.3 + - + +
1224H GLN* 3.4 13.7 - - + +
1226H LYS* 1.3 75.2 - - - +
1228H LEU* 1.3 56.5 + - - +
1230H TYR* 3.1 13.3 + - - +
1231H THR* 2.9 32.1 + - - -
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Residues in contact with LEU1228 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265H ARG* 5.4 12.3 - - + -
266H LEU* 5.3 17.3 - - + -
269H ALA* 5.9 3.4 - - + -
389H GLY 5.6 3.1 - - - +
393H THR* 5.2 15.3 - - - -
1224H GLN 2.9 18.7 + - - +
1225H GLN* 3.5 12.8 - - + +
1226H LYS 3.2 0.2 - - - -
1227H LEU* 1.3 76.5 - - - +
1229H GLU* 1.3 58.0 + - - +
1231H THR* 4.6 5.4 - - - +
1232H ASP* 2.8 35.1 + - + +
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Residues in contact with GLU1229 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1225H GLN 2.9 12.1 + - - +
1226H LYS* 2.9 14.3 + - - +
1228H LEU* 1.3 76.8 - - - +
1230H TYR* 1.3 58.5 + - + +
1232H ASP* 3.5 5.6 - - - +
1233H SER* 2.9 28.6 + - - -
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Residues in contact with TYR1230 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1199H PRO* 4.8 17.3 - - + -
1200H LEU* 5.2 2.7 - - + -
1203H HIS* 3.2 51.2 - + + +
1223H PHE* 5.5 3.6 - + - -
1226H LYS* 2.9 42.0 + - + -
1227H LEU* 3.1 4.9 + - - +
1229H GLU* 1.3 76.0 - - + +
1231H THR* 1.3 56.6 + - - +
1233H SER* 3.0 9.8 + - - -
1234H ASN* 3.0 35.5 + - - +
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Residues in contact with THR1231 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
389H GLY* 5.1 18.3 - - - -
392H GLN* 5.2 10.3 - - - -
1200H LEU* 6.1 0.2 - - - +
1204H PHE* 6.2 4.5 - - - -
1227H LEU* 2.9 19.0 + - - -
1228H LEU* 4.5 7.0 - - - -
1230H TYR* 1.3 73.8 - - - +
1232H ASP* 1.3 60.1 + - - +
1234H ASN* 3.8 10.6 - - - +
1235H ASN* 2.9 28.6 + - - +
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Residues in contact with ASP1232 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
259H ALA* 5.9 4.3 - - + -
262H ASN* 5.1 17.7 - - + -
265H ARG* 5.6 8.5 - - + -
1228H LEU* 2.8 28.2 + - + +
1229H GLU* 3.5 8.5 - - - +
1231H THR* 1.3 77.8 - - - +
1233H SER* 1.3 57.4 + - - +
1235H ASN* 3.2 7.6 + - - +
1236H ILE* 2.9 35.3 + - + +
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Residues in contact with SER1233 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
254H PRO* 4.8 14.2 - - - +
259H ALA* 6.4 0.7 - - - -
1196H THR* 5.4 5.4 - - - -
1229H GLU 2.9 14.0 + - - -
1230H TYR* 3.0 10.5 + - - -
1232H ASP* 1.3 75.8 - - - +
1234H ASN* 1.3 60.0 + - - +
1236H ILE* 3.3 8.7 + - - +
1237H ALA* 3.0 26.9 + - - +
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Residues in contact with ASN1234 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388H ARG* 3.5 21.2 + - - +
1196H THR* 2.9 37.8 + - - +
1197H GLN* 4.2 4.4 + - - +
1200H LEU* 3.7 27.9 - - - +
1230H TYR* 3.0 22.1 + - - +
1231H THR* 3.9 7.9 - - - +
1233H SER* 1.3 76.5 + - - +
1235H ASN* 1.3 57.0 + - - +
1237H ALA* 3.4 6.6 + - - +
1238H SER 2.9 22.7 + - - -
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Residues in contact with ASN1235 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265H ARG* 5.8 7.2 - - + -
385H ILE* 4.6 23.7 - - + +
388H ARG* 4.6 5.6 - - - +
389H GLY* 6.2 2.0 - - - -
1231H THR 2.9 18.8 + - - +
1232H ASP* 3.2 7.8 + - - +
1234H ASN* 1.3 75.1 - - - +
1236H ILE* 1.3 63.4 + - + +
1238H SER* 3.2 9.3 + - - -
1239H LEU* 3.0 25.6 + - - +
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Residues in contact with ILE1236 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
221H PHE* 6.4 1.3 - - + -
257H MET* 3.8 16.8 - - + -
259H ALA* 4.0 25.6 - - + +
260H LEU* 4.2 2.0 - - + +
261H THR* 4.0 36.6 - - - +
262H ASN* 4.9 1.1 - - + +
1232H ASP* 2.9 23.4 + - + +
1233H SER* 3.3 8.0 + - - +
1235H ASN* 1.3 76.0 - - + +
1237H ALA* 1.3 57.9 + - - +
1239H LEU* 3.0 12.3 + - + +
1240H PHE* 2.9 51.3 + - + -
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Residues in contact with ALA1237 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1192H LEU 5.4 0.4 - - - +
1193H ASP* 4.1 31.2 - - + +
1196H THR* 4.5 10.1 - - - -
1233H SER 3.0 14.4 + - - +
1234H ASN* 3.6 12.3 - - - +
1235H ASN 3.3 0.2 - - - -
1236H ILE* 1.3 76.6 - - - +
1238H SER* 1.3 55.6 + - - +
1240H PHE* 3.1 19.5 + - + +
1241H LEU* 3.0 24.6 + - - +
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Residues in contact with SER1238 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381H ILE* 4.2 13.0 - - - +
385H ILE* 4.6 13.7 - - - -
388H ARG* 3.4 27.8 - - - +
1234H ASN 2.9 6.3 + - - -
1235H ASN* 3.2 11.9 + - - -
1237H ALA* 1.3 74.8 - - - +
1239H LEU* 1.3 59.0 + - - +
1241H LEU* 3.1 14.0 + - - +
1242H THR* 2.9 26.7 + - - -
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Residues in contact with LEU1239 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
221H PHE* 6.4 2.0 - - + -
232H TRP* 5.7 9.5 - - + -
378H TYR* 5.1 9.6 - - + +
385H ILE* 5.9 0.4 - - - +
1235H ASN 3.0 12.2 + - - +
1236H ILE* 3.0 18.1 + - + +
1238H SER* 1.3 76.4 - - - +
1240H PHE* 1.3 61.7 + - + +
1242H THR* 3.4 7.6 + - - +
1243H ALA* 2.9 26.2 + - - +
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Residues in contact with PHE1240 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
219H GLN* 6.0 2.2 - - + -
221H PHE* 6.1 4.3 - - + -
236H PHE* 3.7 36.6 - + + -
253H LEU* 4.5 18.8 - - + -
254H PRO* 5.6 0.9 - - + -
257H MET* 3.5 35.7 - - + -
1189H LEU* 4.9 18.9 - - + +
1192H LEU* 6.0 4.9 - - + -
1193H ASP* 5.6 4.7 - - + -
1236H ILE* 2.9 29.4 + - + -
1237H ALA* 3.1 17.2 + - + +
1239H LEU* 1.3 78.0 - - + +
1241H LEU* 1.3 58.8 + - - +
1243H ALA* 3.2 6.7 + - - +
1244H ALA* 2.9 27.5 + - - +
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Residues in contact with LEU1241 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381H ILE* 5.6 10.8 - - + -
433H PHE* 6.3 2.5 - - + -
1189H LEU* 6.0 1.3 - - - -
1190H GLN* 6.5 1.3 - - - -
1193H ASP* 5.4 4.9 - - + -
1237H ALA 3.0 13.1 + - - +
1238H SER* 3.1 15.7 + - - +
1240H PHE* 1.3 76.2 - - - +
1242H THR* 1.3 56.8 + - - +
1244H ALA* 3.1 12.0 + - + +
1245H ASN* 3.0 28.7 + - + +
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Residues in contact with THR1242 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378H TYR* 3.7 30.0 - - - +
381H ILE* 4.0 33.1 - - - +
382H GLU 5.8 0.4 - - - -
1238H SER 2.9 15.8 + - - -
1239H LEU* 3.8 6.5 - - - -
1241H LEU* 1.3 73.6 - - - +
1243H ALA* 1.3 60.4 + - - +
1245H ASN* 4.3 2.8 - - - +
1246H ARG* 2.9 30.7 + - - +
----------------------------------------------------------
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Residues in contact with ALA1243 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
232H TRP* 4.9 17.5 - - + +
236H PHE* 4.1 28.5 - - + -
378H TYR* 5.1 2.6 - - + -
1239H LEU 2.9 16.2 + - - +
1240H PHE 3.2 10.5 + - - +
1242H THR* 1.3 77.0 - - - +
1244H ALA* 1.3 58.6 + - - +
1246H ARG* 3.4 5.9 - - - +
1247H TRP* 2.9 32.4 + - - +
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Residues in contact with ALA1244 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1182H PHE* 3.4 24.0 - - + -
1186H SER* 5.6 3.1 - - - -
1189H LEU* 4.9 14.1 - - + -
1240H PHE 2.9 12.5 + - - +
1241H LEU* 3.1 16.1 + - + +
1243H ALA* 1.3 77.2 - - - +
1245H ASN* 1.3 57.5 + - - +
1247H TRP* 5.5 0.2 - - - -
1248H LEU* 2.9 32.6 + - - +
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Residues in contact with ASN1245 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
374H GLN* 5.2 1.3 - - - +
381H ILE* 5.4 8.5 - - + -
1241H LEU* 3.0 17.2 + - + +
1242H THR* 4.3 5.6 - - - +
1244H ALA* 1.3 76.5 - - - +
1246H ARG* 1.3 57.7 + - - +
1248H LEU* 4.1 5.2 - - - -
1249H GLU* 2.9 33.3 + - + +
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Residues in contact with ARG1246 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229H THR* 4.7 15.7 - - - -
232H TRP* 6.4 2.5 - - + -
374H GLN* 5.3 11.1 - - - +
378H TYR* 5.1 11.7 - - + -
1242H THR 2.9 21.8 + - - +
1243H ALA* 3.4 8.7 - - - +
1244H ALA 3.2 0.4 - - - -
1245H ASN* 1.3 77.0 - - - +
1247H TRP* 1.3 58.9 + - - +
1249H GLU* 4.2 1.0 - - - +
1250H VAL* 2.9 34.2 + - - +
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Residues in contact with TRP1247 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228H GLY 5.8 0.2 - - - -
229H THR* 3.3 29.8 - - - +
230H TYR* 4.7 16.4 - + + -
233H MET* 3.5 30.4 + - + +
237H ILE* 6.1 2.5 - - + +
1177H PHE* 5.7 11.6 - + - -
1178H ILE* 5.7 7.2 - - + +
1182H PHE* 4.7 20.1 - + + +
1243H ALA 2.9 15.3 + - - +
1244H ALA* 4.7 1.1 - - - +
1246H ARG* 1.3 73.2 - - - +
1248H LEU* 1.3 58.4 + - - +
1250H VAL* 4.7 3.8 - - + -
1251H CYS* 2.8 65.2 + - + +
----------------------------------------------------------
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Residues in contact with LEU1248 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1182H PHE* 3.6 28.6 - - + -
1244H ALA 2.9 22.2 + - - +
1245H ASN* 3.9 6.5 - - - +
1247H TRP* 1.3 77.3 - - - +
1249H GLU* 1.3 57.6 + - - +
1251H CYS* 4.3 0.4 - - - +
1252H MET* 2.9 35.2 + - - +
1299H VAL* 5.8 5.5 - - + +
1300H ARG* 6.4 1.8 - - + -
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Residues in contact with GLU1249 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370H ARG* 5.4 3.9 - - + +
374H GLN* 4.4 17.9 - - + -
1245H ASN 2.9 19.9 + - - +
1246H ARG 4.2 0.7 - - - +
1248H LEU* 1.3 77.5 - - - +
1250H VAL* 1.3 58.3 + - - +
1252H MET* 4.8 1.8 - - - -
1253H GLU* 2.9 34.8 + - - +
1296H ASN* 6.1 4.9 - - - -
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Residues in contact with VAL1250 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228H GLY 5.1 3.6 - - - +
229H THR* 4.7 14.6 - - - -
370H ARG* 6.0 3.4 - - - -
371H THR* 5.9 7.9 - - - +
374H GLN* 5.4 5.6 - - + +
1246H ARG 2.9 20.2 + - - +
1247H TRP* 4.6 8.1 - - + +
1249H GLU* 1.3 74.8 - - - +
1251H CYS* 1.3 61.1 + - - +
1253H GLU* 4.4 2.0 - - - +
1254H TYR* 2.9 32.3 + - - +
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Residues in contact with CYS1251 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1178H ILE* 5.5 9.4 - - + -
1247H TRP* 2.8 61.5 + - + +
1248H LEU* 4.3 0.4 - - - +
1250H VAL* 1.3 76.2 - - - +
1252H MET* 1.3 59.1 + - - +
1254H TYR* 3.6 4.5 - - - +
1255H ILE* 3.0 31.2 + - - +
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Residues in contact with MET1252 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1248H LEU 2.9 20.5 + - - +
1249H GLU* 4.3 2.2 - - - +
1251H CYS* 1.3 78.5 - - - +
1253H GLU* 1.3 56.8 + - - +
1255H ILE* 4.1 2.8 - - - +
1256H GLY* 2.9 25.6 + - - -
1292H SER* 4.9 2.5 - - - -
1295H LEU* 4.4 28.7 - - + +
1296H ASN* 4.5 12.6 - - + -
1299H VAL* 5.1 8.3 - - + -
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Residues in contact with GLU1253 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367H LEU* 5.9 3.3 - - - +
370H ARG* 4.0 26.5 - - + -
1249H GLU 2.9 20.8 + - - +
1250H VAL* 4.4 1.6 - - - +
1252H MET* 1.3 76.2 - - - +
1254H TYR* 1.3 58.8 + - - +
1256H GLY* 3.8 2.1 - - - +
1257H ALA* 2.9 28.2 + - - +
1292H SER* 4.9 12.2 - - - +
1296H ASN* 5.9 3.1 - - + +
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Residues in contact with TYR1254 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367H LEU* 5.9 5.8 - - + -
1250H VAL 2.9 22.5 + - - +
1251H CYS* 3.6 5.4 - - - +
1252H MET 3.2 0.2 - - - -
1253H GLU* 1.3 75.4 - - - +
1255H ILE* 1.3 61.1 + - - +
1257H ALA* 3.1 8.6 + - - +
1258H CYS* 3.0 24.8 + - - +
----------------------------------------------------------
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Residues in contact with ILE1255 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1174H VAL* 5.2 15.3 - - + -
1175H CYS* 5.9 4.7 - - + +
1251H CYS 3.0 16.3 + - - +
1252H MET* 4.3 3.1 - - - +
1254H TYR* 1.3 76.4 - - - +
1256H GLY* 1.3 58.2 + - - +
1258H CYS* 3.2 10.9 + - - +
1259H VAL* 2.9 24.9 + - - +
----------------------------------------------------------
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Residues in contact with GLY1256 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1252H MET 2.9 18.3 + - - -
1253H GLU 3.8 0.7 - - - -
1255H ILE* 1.3 74.6 - - - +
1257H ALA* 1.3 59.7 + - - +
1259H VAL* 3.2 10.7 + - - +
1260H VAL* 2.9 24.8 + - - +
1288H ALA 4.5 3.1 - - - +
1292H SER* 3.9 27.4 - - - -
1295H LEU* 5.7 2.7 - - - -
----------------------------------------------------------
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Residues in contact with ALA1257 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363H PHE* 4.2 26.4 - - + +
366H LEU* 5.6 3.6 - - + -
367H LEU* 5.2 10.1 - - + +
1253H GLU 2.9 20.3 + - - +
1254H TYR* 3.1 8.7 + - - +
1256H GLY* 1.3 74.8 - - - +
1258H CYS* 1.3 59.6 + - - +
1260H VAL* 3.0 10.8 + - - +
1261H LEU* 2.9 25.8 + - - +
1292H SER* 4.7 0.6 - - - -
----------------------------------------------------------
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Residues in contact with CYS1258 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1254H TYR 3.0 11.9 + - - +
1255H ILE* 3.2 13.0 + - - +
1257H ALA* 1.3 75.9 - - - +
1259H VAL* 1.3 58.1 + - - +
1261H LEU* 3.2 9.2 + - - +
1262H ILE* 2.9 27.4 + - - +
----------------------------------------------------------
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Residues in contact with VAL1259 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1171H LEU* 5.9 7.6 - - + -
1255H ILE 2.9 12.7 + - - +
1256H GLY* 3.2 13.4 + - - +
1258H CYS* 1.3 75.7 - - - +
1260H VAL* 1.3 58.8 + - - +
1262H ILE* 3.5 7.9 + - - +
1263H ALA* 2.9 27.0 + - - +
1288H ALA* 4.7 4.3 - - - +
1291H VAL* 6.0 5.6 - - + -
----------------------------------------------------------
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Residues in contact with VAL1260 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363H PHE* 4.8 11.0 - - + -
1256H GLY 2.9 13.2 + - - +
1257H ALA* 3.0 14.3 + - - +
1259H VAL* 1.3 74.6 - - - +
1261H LEU* 1.3 59.4 + - - +
1263H ALA* 3.3 3.6 + - - +
1264H ALA* 2.9 24.9 + - - +
1288H ALA* 3.9 27.3 - - + +
1289H LEU* 5.1 2.0 - - - +
----------------------------------------------------------
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Residues in contact with LEU1261 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
360H VAL* 5.3 12.1 - - + +
363H PHE* 5.0 9.4 - - + +
1257H ALA 2.9 12.0 + - - +
1258H CYS* 3.2 11.2 + - - +
1260H VAL* 1.3 75.6 - - - +
1262H ILE* 1.3 59.8 + - - +
1264H ALA* 3.1 9.9 + - - +
1265H ALA* 2.9 24.9 + - - +
----------------------------------------------------------
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Residues in contact with ILE1262 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1165H LEU* 5.2 5.2 - - - +
1166H VAL 6.0 1.1 - - - +
1167H ALA* 5.7 9.4 - - + -
1258H CYS 2.9 17.1 + - - +
1259H VAL* 3.8 8.1 - - - +
1260H VAL 3.3 0.2 - - - -
1261H LEU* 1.3 74.8 - - - +
1263H ALA* 1.3 58.4 + - - +
1265H ALA* 3.2 10.5 + - - +
1266H THR* 2.9 26.2 + - - -
----------------------------------------------------------
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Residues in contact with ALA1263 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1259H VAL 2.9 15.6 + - - +
1260H VAL 3.4 9.6 - - - +
1261H LEU 3.2 0.2 - - - -
1262H ILE* 1.3 76.2 - - - +
1264H ALA* 1.3 57.0 + - - +
1266H THR* 3.2 9.1 + - - -
1267H SER* 2.9 27.7 + - - -
1284H GLY* 3.8 27.7 - - - +
1285H LEU* 5.3 1.6 - - - -
1288H ALA* 3.9 8.3 - - + -
----------------------------------------------------------
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Residues in contact with ALA1264 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356H TYR* 4.4 16.1 - - + +
359H ALA* 4.9 18.6 - - + -
360H VAL* 5.4 5.4 - - + +
1260H VAL 2.9 12.7 + - - +
1261H LEU* 3.1 13.6 + - - +
1263H ALA* 1.3 73.2 - - - +
1265H ALA* 1.3 60.3 + - - +
1267H SER* 3.4 7.4 + - - +
1268H ILE* 2.9 26.9 + - - +
----------------------------------------------------------
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Residues in contact with ALA1265 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1165H LEU* 5.7 0.2 - - - -
1261H LEU 2.9 12.8 + - - +
1262H ILE* 3.4 13.2 - - - +
1264H ALA* 1.3 77.5 - - - +
1266H THR* 1.3 56.5 + - - +
1268H ILE* 3.1 7.7 + - - +
1269H SER* 3.0 30.8 + - - -
----------------------------------------------------------
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Residues in contact with THR1266 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1161H THR* 3.9 19.3 - - - -
1162H PRO* 4.5 1.6 - - - +
1165H LEU* 3.8 30.7 - - - +
1262H ILE 2.9 13.4 + - - -
1263H ALA* 3.2 12.8 + - - -
1265H ALA* 1.3 77.7 - - - +
1267H SER* 1.3 56.0 + - - +
1269H SER* 4.4 2.2 - - - -
1270H ASN* 2.9 33.6 + - - +
----------------------------------------------------------
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Residues in contact with SER1267 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356H TYR* 4.3 6.4 + - - -
1263H ALA 2.9 15.6 + - - -
1264H ALA* 3.8 7.2 - - - -
1266H THR* 1.3 74.1 - - - +
1268H ILE* 1.3 52.9 + - - +
1270H ASN* 4.6 3.6 - - - -
1271H SER* 2.6 39.3 + - - -
1281H VAL* 4.5 20.9 - - - +
----------------------------------------------------------
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Residues in contact with ILE1268 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356H TYR* 3.6 30.6 + - + -
1264H ALA 2.9 15.2 + - - +
1265H ALA* 3.1 12.5 + - - +
1267H SER* 1.3 76.6 - - - +
1269H SER* 1.3 60.6 + - - +
1271H SER* 3.2 0.5 + - - -
1272H LEU* 3.0 33.1 + - - +
1273H HIS 4.0 0.2 + - - -
----------------------------------------------------------
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Residues in contact with SER1269 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1162H PRO* 5.7 6.3 - - - -
1265H ALA 3.0 16.0 + - - -
1266H THR* 4.4 3.1 - - - -
1268H ILE* 1.3 76.7 - - - +
1270H ASN* 1.3 59.0 + - - +
1273H HIS* 2.6 43.3 + - - +
1274H ARG* 3.8 1.9 + - - +
----------------------------------------------------------
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Residues in contact with ASN1270 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1160H VAL 5.2 5.2 - - - +
1161H THR* 6.0 0.2 - - - -
1162H PRO* 4.4 21.9 - - + +
1266H THR 2.9 21.1 + - - +
1267H SER* 4.5 3.1 - - - +
1269H SER* 1.3 77.8 - - - +
1271H SER* 1.3 61.5 + - - +
1273H HIS 4.7 0.2 - - - -
1274H ARG* 4.1 6.4 + - - +
1275H GLU 4.2 2.9 - - - +
1276H LEU* 3.5 18.8 + - - -
----------------------------------------------------------
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Residues in contact with SER1271 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
327H LEU* 5.1 13.9 - - - -
356H TYR* 3.6 15.3 - - - -
1267H SER 2.6 24.5 + - - -
1268H ILE 3.6 2.9 - - - -
1269H SER 3.2 0.2 - - - -
1270H ASN* 1.3 78.0 - - - +
1272H LEU* 1.3 60.0 + - - +
1274H ARG 3.1 16.5 - - - +
1276H LEU* 3.4 21.8 - - - +
1281H VAL* 6.6 0.2 - - - -
----------------------------------------------------------
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Residues in contact with LEU1272 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356H TYR* 4.5 9.9 - - + +
1268H ILE 3.0 11.7 + - - +
1271H SER* 1.3 73.8 - - - +
1273H HIS* 1.3 65.0 + - - +
1274H ARG* 3.2 5.9 + - - +
----------------------------------------------------------
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Residues in contact with HIS1273 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1268H ILE 4.0 0.8 + - - -
1269H SER* 2.6 34.2 + - - +
1272H LEU* 1.3 77.7 - - - +
1274H ARG* 1.3 60.3 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il