Contacts of the helix formed by residues 1282 - 1319 (chain D) in PDB entry 5TWV
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY1282 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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320D ILE* 6.0 4.9 - - - -
577D PHE* 3.4 26.6 - - - +
1281D VAL* 1.3 76.4 - - - +
1283D LEU* 1.3 59.4 + - - +
1284D GLY 3.3 1.3 - - - -
1285D LEU* 3.1 11.8 + - - +
1286D THR* 2.9 32.2 + - - -
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Residues in contact with LEU1283 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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577D PHE* 3.3 22.9 - - + -
1035D ALA* 5.6 5.4 - - + -
1157D ILE* 5.2 0.2 - - - -
1160D VAL* 5.5 4.9 - - + -
1280D LEU* 3.8 20.2 - - + +
1281D VAL 3.3 1.4 - - - -
1282D GLY* 1.3 77.9 - - - +
1284D GLY* 1.3 57.6 + - - +
1286D THR* 4.9 2.7 - - - -
1287D TYR* 2.9 52.9 + - + +
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Residues in contact with GLY1284 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1157D ILE* 4.2 21.7 - - - +
1160D VAL* 5.3 5.3 - - - +
1263D ALA* 3.8 14.4 - - - +
1280D LEU 4.2 3.8 + - - -
1281D VAL 4.0 6.0 + - - -
1282D GLY 3.3 0.6 - - - -
1283D LEU* 1.3 77.9 - - - +
1285D LEU* 1.3 57.7 + - - +
1287D TYR 3.7 0.3 - - - -
1288D ALA* 2.8 28.7 + - - +
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Residues in contact with LEU1285 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320D ILE* 5.0 15.9 - - + -
1263D ALA* 5.3 2.0 - - - -
1281D VAL 4.4 3.2 + - - +
1282D GLY* 3.1 19.0 + - - +
1284D GLY* 1.3 76.5 - - - +
1286D THR* 1.3 61.3 + - - +
1288D ALA* 3.0 6.3 + - - +
1289D LEU* 3.0 28.8 + - - +
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Residues in contact with THR1286 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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577D PHE* 4.4 21.1 - - - -
580D LEU* 5.9 2.2 - - - -
581D SER* 5.1 10.5 - - - -
1282D GLY 2.9 14.6 + - - -
1283D LEU* 4.4 3.8 - - - -
1285D LEU* 1.3 75.1 - - - +
1287D TYR* 1.3 60.4 + - - +
1289D LEU* 3.6 4.1 + - - +
1290D MET* 2.9 50.0 + - - +
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Residues in contact with TYR1287 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1028D VAL* 5.1 5.5 - - + +
1031D ASP* 3.2 30.4 + - + +
1153D ALA* 4.1 29.7 - - + +
1156D VAL* 4.8 10.3 - - + -
1157D ILE* 4.0 29.0 - - + +
1283D LEU* 2.9 37.4 + - + +
1284D GLY 3.7 0.7 - - - -
1286D THR* 1.3 76.8 - - - +
1288D ALA* 1.3 52.0 + - - +
1290D MET* 3.6 25.8 - - + -
1291D VAL* 2.6 38.1 + - - +
1294D TYR* 5.9 2.9 - + - -
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Residues in contact with ALA1288 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1256D GLY 4.5 5.9 - - - +
1259D VAL* 4.7 2.5 - - - +
1260D VAL* 3.9 32.0 - - + +
1263D ALA* 3.9 9.4 - - + -
1284D GLY 2.8 20.8 + - - +
1285D LEU* 3.0 10.7 + - - +
1287D TYR* 1.3 77.6 - - - +
1289D LEU* 1.3 60.0 + - - +
1291D VAL* 3.1 5.8 + - - +
1292D SER* 3.0 27.4 + - - -
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Residues in contact with LEU1289 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1260D VAL* 5.1 2.6 - - - +
1285D LEU 3.0 13.8 + - - +
1286D THR* 4.1 3.8 - - - +
1288D ALA* 1.3 77.4 - - - +
1290D MET* 1.3 59.8 + - + +
1292D SER* 3.1 9.6 + - - -
1293D ASN* 3.0 24.0 + - - +
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Residues in contact with MET1290 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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580D LEU* 5.9 7.0 - - + +
581D SER* 5.9 3.6 - - - -
584D HIS* 4.3 27.1 - - + -
1286D THR* 2.9 36.8 + - - +
1287D TYR* 3.6 30.3 - - + -
1289D LEU* 1.3 74.7 - - + +
1291D VAL* 1.3 60.0 + - - +
1293D ASN* 3.6 11.6 - - + +
1294D TYR* 2.8 55.7 + - + -
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Residues in contact with VAL1291 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1153D ALA* 5.8 3.6 - - + +
1154D LEU* 5.9 6.1 - - + -
1259D VAL* 6.0 6.3 - - + -
1287D TYR 2.6 26.0 + - - +
1288D ALA* 3.1 9.6 + - - +
1290D MET* 1.3 77.0 - - - +
1292D SER* 1.3 58.2 + - - +
1294D TYR* 3.2 13.2 + - + +
1295D LEU* 2.9 26.5 + - - +
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Residues in contact with SER1292 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1252D MET 4.9 3.6 - - - +
1253D GLU* 4.9 13.5 - - - +
1256D GLY* 3.9 30.0 - - - -
1257D ALA* 4.7 0.9 - - - -
1288D ALA 3.0 12.2 + - - -
1289D LEU* 3.1 9.8 + - - -
1291D VAL* 1.3 74.0 - - - +
1293D ASN* 1.3 59.7 + - - +
1295D LEU* 3.3 9.0 + - - +
1296D ASN* 3.0 26.9 + - - +
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Residues in contact with ASN1293 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1289D LEU 3.0 13.1 + - - +
1290D MET* 3.6 16.2 - - + +
1291D VAL 3.3 0.2 - - - -
1292D SER* 1.3 76.9 - - - +
1294D TYR* 1.3 60.2 + - + +
1296D ASN* 3.1 6.1 + - - +
1297D TRP* 2.9 59.5 + - + -
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Residues in contact with TYR1294 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1024D HIS* 5.6 1.6 - - - -
1146D SER* 4.7 6.9 - - - +
1149D LEU* 3.2 46.3 - - + +
1150D CYS* 3.7 23.7 - - + +
1153D ALA* 3.7 20.8 - - + +
1287D TYR* 5.9 2.8 - + - -
1290D MET* 2.8 44.7 + - + +
1291D VAL* 3.2 10.5 + - + +
1293D ASN* 1.3 77.2 - - + +
1295D LEU* 1.3 53.9 + - - +
1297D TRP* 5.2 5.8 - + + -
1298D MET* 2.5 40.7 + - - +
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Residues in contact with LEU1295 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1150D CYS* 5.9 0.2 - - - -
1252D MET* 4.4 18.8 - - + +
1256D GLY* 5.7 2.5 - - - -
1291D VAL 2.9 13.3 + - - +
1292D SER* 3.7 10.5 - - - +
1293D ASN 3.3 0.4 - - - -
1294D TYR* 1.3 75.7 - - - +
1296D ASN* 1.3 58.6 + - - +
1298D MET* 4.0 4.2 - - - +
1299D VAL* 2.9 31.4 + - - +
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Residues in contact with ASN1296 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1249D GLU* 6.1 4.3 - - - -
1252D MET* 4.5 12.7 - - + +
1253D GLU* 5.9 3.4 - - + +
1292D SER 3.0 13.3 + - - +
1293D ASN* 3.1 11.4 + - - +
1295D LEU* 1.3 74.6 - - - +
1297D TRP* 1.3 67.2 + - + +
1299D VAL* 3.2 3.6 + - - +
1300D ARG* 3.0 30.4 + - - +
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Residues in contact with TRP1297 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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588D THR* 5.6 11.9 - - - -
1146D SER* 3.9 12.0 - - - -
1293D ASN* 2.9 52.5 + - + +
1294D TYR* 4.9 5.8 - + + +
1296D ASN* 1.3 78.3 - - + +
1298D MET* 1.3 49.3 + - - +
1300D ARG* 4.6 6.7 - - + +
1301D ASN* 2.6 40.2 + - - +
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Residues in contact with MET1298 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1146D SER* 4.3 12.7 - - - +
1147D THR* 5.2 3.4 - - - +
1150D CYS* 4.5 14.1 - - + -
1294D TYR 2.5 25.4 + - - +
1295D LEU* 4.0 4.9 - - - +
1297D TRP* 1.3 78.0 - - - +
1299D VAL* 1.3 59.2 + - - +
1301D ASN* 3.8 3.6 - - - +
1302D LEU* 2.9 27.9 + - - +
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Residues in contact with VAL1299 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1182D PHE* 5.0 15.3 - - + -
1248D LEU* 5.8 5.6 - - + +
1252D MET* 5.1 9.2 - - + -
1295D LEU 2.9 19.5 + - - +
1296D ASN* 3.2 4.5 + - - +
1298D MET* 1.3 74.8 - - - +
1300D ARG* 1.3 60.4 + - - +
1302D LEU* 3.0 9.0 + - - +
1303D ALA* 2.9 24.8 + - - +
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Residues in contact with ARG1300 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1182D PHE* 5.9 1.8 - - - -
1248D LEU* 6.4 1.8 - - + -
1296D ASN 3.0 15.4 + - - +
1297D TRP* 4.7 7.9 - - + +
1299D VAL* 1.3 73.1 - - - +
1301D ASN* 1.3 60.6 + - - +
1303D ALA* 3.1 10.9 + - - +
1304D ASP* 2.9 27.9 + - - +
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Residues in contact with ASN1301 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1139D THR 5.1 1.4 - - - +
1142D CYS* 4.5 5.2 - - + +
1143D LEU* 4.2 28.4 - - + +
1146D SER* 4.2 7.2 - - - -
1297D TRP 2.6 23.6 + - - +
1298D MET* 4.0 5.6 - - - +
1300D ARG* 1.3 75.8 - - - +
1302D LEU* 1.3 58.9 + - - +
1304D ASP* 3.8 7.0 - - - +
1305D MET* 2.9 29.6 + - - +
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Residues in contact with LEU1302 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1179D GLN* 6.4 1.8 - - + -
1298D MET 2.9 19.6 + - - +
1299D VAL* 3.0 9.4 + - - +
1301D ASN* 1.3 75.8 - - - +
1303D ALA* 1.3 59.0 + - - +
1305D MET* 3.6 6.6 + - - +
1306D GLU* 2.9 26.9 + - - +
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Residues in contact with ALA1303 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1182D PHE* 4.7 15.9 - - + -
1186D SER* 5.3 7.4 - - - -
1299D VAL 2.9 12.1 + - - +
1300D ARG* 3.1 13.4 + - - +
1302D LEU* 1.3 74.6 - - - +
1304D ASP* 1.3 60.7 + - - +
1306D GLU* 3.0 8.4 + - - +
1307D ILE* 3.0 29.3 + - - +
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Residues in contact with ASP1304 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1139D THR* 4.1 20.9 - - - -
1300D ARG 2.9 14.7 + - - +
1301D ASN* 3.5 7.2 + - - +
1303D ALA* 1.3 76.3 - - - +
1305D MET* 1.3 57.4 + - - +
1307D ILE* 4.4 4.2 - - - +
1308D GLN* 2.9 35.0 + - - +
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Residues in contact with MET1305 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1139D THR* 5.1 4.6 - - - +
1140D LEU* 6.5 0.2 - - - -
1143D LEU* 4.5 15.9 - - + -
1301D ASN 2.9 19.2 + - - +
1302D LEU* 3.8 7.4 - - - +
1304D ASP* 1.3 73.8 - - - +
1306D GLU* 1.3 53.3 + - - +
1308D GLN* 4.6 2.7 - - - -
1309D LEU* 2.6 41.2 + - - +
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Residues in contact with GLU1306 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1183D ARG* 6.1 3.4 - - + +
1187D ARG* 6.0 7.2 - - + -
1302D LEU 2.9 15.2 + - - +
1303D ALA* 3.0 12.3 + - - +
1305D MET* 1.3 76.4 - - - +
1307D ILE* 1.3 61.3 + - - +
1309D LEU* 3.7 4.0 - - - +
1310D GLY* 2.9 22.5 + - - -
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Residues in contact with ILE1307 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1190D GLN* 5.5 11.2 - - + -
1303D ALA 3.0 14.5 + - - +
1304D ASP* 4.4 4.0 - - - +
1306D GLU* 1.3 73.3 - - - +
1308D GLN* 1.3 61.8 + - - +
1310D GLY* 2.9 16.3 + - - -
1311D ALA* 2.9 12.5 + - - +
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Residues in contact with GLN1308 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1135D HIS* 5.2 7.0 - - + +
1136D ILE* 5.3 9.8 - - + +
1139D THR* 4.9 11.7 - - - -
1304D ASP 2.9 20.7 + - - +
1305D MET* 4.6 2.0 - - - -
1307D ILE* 1.3 74.1 - - - +
1309D LEU* 1.3 60.1 + - - +
1311D ALA* 3.0 11.1 + - + +
1312D VAL* 2.9 26.7 + - - +
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Residues in contact with LEU1309 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1305D MET 2.6 25.0 + - - +
1306D GLU* 3.7 5.4 - - - +
1308D GLN* 1.3 75.2 - - - +
1310D GLY* 1.3 60.0 + - - +
1312D VAL* 3.8 7.5 - - - +
1313D LYS* 2.9 27.9 + - - +
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Residues in contact with GLY1310 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1306D GLU 2.9 15.3 + - - -
1307D ILE* 2.9 7.5 + - - -
1309D LEU* 1.3 77.7 - - - +
1311D ALA* 1.3 56.7 + - - +
1313D LYS* 3.3 7.7 + - - +
1314D ARG* 2.9 28.2 + - - +
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Residues in contact with ALA1311 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1128D ASP* 4.6 8.6 - - - +
1131D THR* 5.6 5.8 - - - -
1132D ILE* 4.8 20.9 - - + +
1307D ILE 2.9 11.1 + - - +
1308D GLN* 3.0 14.1 + - - +
1310D GLY* 1.3 75.3 - - - +
1312D VAL* 1.3 59.9 + - - +
1314D ARG* 3.2 13.8 + - - +
1315D ILE* 2.9 24.9 + - - +
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Residues in contact with VAL1312 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1004D TYR* 3.7 36.3 - - + -
1132D ILE* 5.3 6.2 - - + +
1308D GLN 2.9 14.2 + - - +
1309D LEU* 4.0 8.1 - - - +
1311D ALA* 1.3 76.7 - - - +
1313D LYS* 1.3 57.5 + - - +
1315D ILE* 3.2 10.3 + - + +
1316D HIS* 2.9 26.7 + - - +
----------------------------------------------------------
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Residues in contact with LYS1313 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1309D LEU 2.9 19.6 + - - +
1310D GLY* 3.6 9.2 - - - +
1311D ALA 3.2 0.2 - - - -
1312D VAL* 1.3 73.7 - - - +
1314D ARG* 1.3 61.3 + - - +
1316D HIS* 3.4 7.9 + - - +
1317D ALA* 2.9 27.4 + - - +
----------------------------------------------------------
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Residues in contact with ARG1314 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1124D ARG* 3.7 46.8 - - + +
1127D SER* 4.7 5.4 - - - -
1128D ASP* 4.6 6.5 - - + +
1310D GLY 2.9 14.3 + - - +
1311D ALA* 3.2 14.9 + - - +
1313D LYS* 1.3 75.0 - - - +
1315D ILE* 1.3 59.2 + - - +
1317D ALA* 3.1 9.0 + - + +
1318D LEU* 2.9 26.0 + - - +
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Residues in contact with ILE1315 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1128D ASP* 4.5 17.4 - - + +
1132D ILE* 5.6 4.5 - - + -
1311D ALA 2.9 12.7 + - - +
1312D VAL* 3.2 13.2 + - + +
1314D ARG* 1.3 76.7 - - - +
1316D HIS* 1.3 61.2 + - - +
1318D LEU* 3.3 19.8 + - - +
1319D LEU* 4.0 4.7 + - - +
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Residues in contact with HIS1316 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1003D LYS* 3.7 35.1 + - + +
1312D VAL 2.9 15.3 + - - +
1313D LYS* 3.8 8.7 - - - +
1315D ILE* 1.3 75.3 - - - +
1317D ALA* 1.3 63.1 + - - +
1318D LEU 3.2 1.0 + - - -
1319D LEU* 3.5 23.1 + - + +
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Residues in contact with ALA1317 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1313D LYS 2.9 18.1 + - - +
1314D ARG* 3.1 11.4 + - + +
1316D HIS* 1.3 75.1 - - - +
1318D LEU* 1.3 62.2 + - - +
1319D LEU* 3.3 3.7 - - - -
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Residues in contact with LEU1318 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1101D LEU* 6.0 4.5 - - + -
1105D ILE* 6.1 0.9 - - - +
1124D ARG* 5.7 5.4 - - + +
1125D PHE* 5.1 22.0 - - + +
1128D ASP* 6.2 0.7 - - + -
1314D ARG 2.9 11.3 + - - +
1315D ILE* 3.4 15.7 - - - +
1316D HIS 3.2 0.8 - - - -
1317D ALA* 1.3 78.1 - - - +
1319D LEU* 1.3 60.4 + - - +
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Residues in contact with LEU1319 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1104D ARG* 6.0 7.2 - - + -
1315D ILE 4.0 4.1 + - - +
1316D HIS* 3.5 21.7 + - + +
1317D ALA 3.3 4.8 - - - -
1318D LEU* 1.3 83.1 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il