Contacts of the helix formed by residues 351 - 403 (chain B) in PDB entry 5TWV
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PHE 351 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94B LEU* 5.6 12.8 - - + -
326B HIS* 4.6 5.4 - - - +
348B SER* 3.6 12.5 + - - +
349B GLN 3.2 6.2 + - - +
350B GLU* 1.3 79.5 - - - +
352B LEU* 1.3 61.6 - - - +
353B GLY 3.6 1.8 - - - +
354B ASN* 3.8 15.3 - - + +
355B ALA* 2.9 27.3 + - - +
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Residues in contact with LEU 352 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
326B HIS* 4.4 23.3 - - + +
327B LEU* 6.0 1.6 - - + -
351B PHE* 1.3 73.2 - - - +
353B GLY* 1.3 65.6 + - - +
355B ALA* 3.1 16.2 + - - +
356B TYR* 3.2 27.4 + - + +
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Residues in contact with GLY 353 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93B ILE* 6.4 2.0 - - - -
351B PHE* 4.4 2.2 - - - +
352B LEU* 1.3 78.4 - - - +
354B ASN* 1.3 56.5 + - - +
356B TYR* 3.0 18.8 + - - +
357B VAL* 2.9 28.2 + - - +
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Residues in contact with ASN 354 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90B ALA* 5.6 12.1 - - + +
349B GLN 3.3 26.5 - - - +
350B GLU* 5.5 1.3 - - - -
351B PHE* 3.7 18.1 + - + +
352B LEU 3.3 0.4 - - - -
353B GLY* 1.3 73.2 - - - +
355B ALA* 1.3 52.7 + - - +
357B VAL* 4.5 5.2 - - - +
358B LEU* 2.6 40.6 + - + +
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Residues in contact with ALA 355 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319B CYS* 5.3 8.3 - - - +
322B GLY* 4.7 22.2 - - - +
323B ILE* 4.7 10.8 - - + +
326B HIS* 5.6 0.4 - - + -
350B GLU* 5.2 1.5 - - - +
351B PHE 2.9 18.7 + - - +
352B LEU* 3.1 10.2 + - - +
354B ASN* 1.3 75.7 - - - +
356B TYR* 1.3 61.1 + - + +
358B LEU* 4.2 3.3 - - - +
359B ALA* 2.9 28.6 + - - +
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Residues in contact with TYR 356 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323B ILE* 6.3 3.1 - - + -
327B LEU* 5.4 5.1 - - + +
352B LEU* 3.2 31.9 + - + +
353B GLY* 3.0 16.2 + - - +
355B ALA* 1.3 78.8 - - + +
357B VAL* 1.3 58.8 + - - +
359B ALA* 3.0 8.3 + - - +
360B VAL* 2.9 25.6 + - - +
1264B ALA* 4.4 16.2 - - + +
1267B SER* 4.4 6.5 - - - -
1268B ILE* 3.6 39.2 + - + -
1271B SER* 3.6 22.0 - - - -
1272B LEU* 4.5 9.3 - - + +
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Residues in contact with VAL 357 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90B ALA* 5.7 9.4 - - + -
353B GLY 2.9 13.8 + - - +
354B ASN* 4.8 4.3 - - - +
356B TYR* 1.3 76.9 - - - +
358B LEU* 1.3 58.0 + - - +
360B VAL* 3.5 9.2 + - - +
361B LEU* 2.9 25.3 + - - +
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Residues in contact with LEU 358 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319B CYS* 4.6 10.0 - - + +
354B ASN* 2.6 24.7 + - + +
355B ALA* 4.2 3.8 - - - +
357B VAL* 1.3 75.4 - - - +
359B ALA* 1.3 58.9 + - - +
361B LEU* 3.3 11.6 + - + +
362B LEU* 2.9 24.6 + - - +
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Residues in contact with ALA 359 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319B CYS* 4.9 9.6 - - + +
320B ILE* 6.6 0.2 - - - -
355B ALA 2.9 21.0 + - - +
356B TYR* 3.0 8.2 + - + +
358B LEU* 1.3 74.8 - - - +
360B VAL* 1.3 59.1 + - - +
361B LEU 3.2 0.2 - - - -
362B LEU* 3.1 10.5 + - - +
363B PHE* 2.9 23.2 + - - +
1264B ALA* 4.9 13.9 - - + -
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Residues in contact with VAL 360 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356B TYR 2.9 12.2 + - - +
357B VAL* 3.7 11.0 - - - +
359B ALA* 1.3 75.4 - - - +
361B LEU* 1.3 57.3 + - - +
363B PHE* 3.1 9.7 + - - +
364B LEU* 2.9 27.2 + - - +
1261B LEU* 5.3 13.2 - - + +
1264B ALA* 5.4 5.5 - - + +
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Residues in contact with LEU 361 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83B PHE* 5.7 10.0 - - + -
357B VAL 2.9 16.7 + - - +
358B LEU* 3.4 15.0 - - + +
359B ALA 3.2 0.2 - - - -
360B VAL* 1.3 76.2 - - - +
362B LEU* 1.3 58.6 + - - +
364B LEU* 3.8 7.1 - - - +
365B ALA* 2.9 29.5 + - - +
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Residues in contact with LEU 362 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316B GLY* 4.9 12.1 - - - +
319B CYS* 4.3 16.2 - - + -
358B LEU 2.9 13.6 + - - +
359B ALA* 3.1 13.6 + - - +
361B LEU* 1.3 74.1 - - - +
363B PHE* 1.3 61.0 + - - +
365B ALA* 3.8 6.3 - - - +
366B LEU* 2.9 27.4 + - - +
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Residues in contact with PHE 363 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359B ALA 2.9 12.0 + - - +
360B VAL* 3.1 13.6 + - - +
362B LEU* 1.3 77.3 - - - +
364B LEU* 1.3 58.0 + - - +
366B LEU* 3.2 8.9 + - - +
367B LEU* 2.9 25.3 + - - +
1257B ALA* 4.2 29.1 - - + +
1260B VAL* 4.8 11.4 - - + -
1261B LEU* 5.0 8.1 - - + +
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Residues in contact with LEU 364 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83B PHE* 5.9 8.5 - - + -
360B VAL 2.9 15.2 + - - +
361B LEU* 3.8 8.1 - - - +
362B LEU 3.4 0.2 - - - -
363B PHE* 1.3 76.1 - - - +
365B ALA* 1.3 57.4 + - - +
367B LEU* 3.1 10.9 + - - +
368B LEU* 2.9 23.2 + - - +
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Residues in contact with ALA 365 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83B PHE* 6.0 8.6 - - + -
312B LEU* 3.7 19.7 - - + +
361B LEU 2.9 18.3 + - - +
362B LEU* 4.2 6.1 - - - +
364B LEU* 1.3 73.2 - - - +
366B LEU* 1.3 60.9 + - - +
368B LEU* 3.2 12.5 + - + +
369B GLN* 2.8 26.7 + - - +
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Residues in contact with LEU 366 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
312B LEU 5.8 1.1 - - - -
362B LEU 2.9 20.3 + - - +
363B PHE* 3.2 10.7 + - - +
365B ALA* 1.3 75.7 - - - +
367B LEU* 1.3 59.8 + - - +
369B GLN* 3.7 6.9 - - - +
370B ARG* 2.9 30.8 + - - +
1257B ALA* 5.6 4.3 - - + -
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Residues in contact with LEU 367 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363B PHE 2.9 13.0 + - - +
364B LEU* 3.1 12.5 + - - +
366B LEU* 1.3 76.0 - - - +
368B LEU* 1.3 50.7 + - - +
370B ARG* 4.6 3.4 - - - +
371B THR* 2.6 41.2 + - - +
1253B GLU* 5.9 2.2 - - - -
1254B TYR* 5.9 6.3 - - + -
1257B ALA* 5.2 10.3 - - + +
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Residues in contact with LEU 368 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83B PHE* 6.4 2.5 - - + -
309B ALA* 5.5 0.2 - - - -
312B LEU* 5.0 6.1 - - + -
364B LEU 2.9 13.1 + - - +
365B ALA* 3.2 15.2 + - + +
367B LEU* 1.3 77.9 - - - +
369B GLN* 1.3 56.3 + - - +
371B THR* 4.1 3.1 - - - -
372B PHE* 2.9 32.6 + - - +
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Residues in contact with GLN 369 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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309B ALA* 3.8 15.2 - - - +
312B LEU* 3.7 19.5 - - + +
313B GLY* 3.8 19.5 - - - +
365B ALA 2.8 15.4 + - - +
366B LEU* 3.2 8.5 + - - +
367B LEU 3.2 0.2 - - - -
368B LEU* 1.3 75.9 - - - +
370B ARG* 1.3 61.1 + - - +
373B LEU* 2.9 31.5 + - - +
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Residues in contact with ARG 370 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
366B LEU 2.9 16.3 + - - +
367B LEU* 4.6 2.9 - - - +
369B GLN* 1.3 75.3 - - - +
371B THR* 1.3 57.6 + - - +
373B LEU* 3.6 5.7 - - - +
374B GLN* 2.9 31.7 + - - +
1249B GLU* 5.4 4.1 - - + +
1250B VAL* 6.0 2.9 - - - -
1253B GLU* 4.0 26.5 - - + -
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Residues in contact with THR 371 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
367B LEU* 2.6 24.2 + - - -
368B LEU* 4.1 3.8 - - - -
370B ARG* 1.3 75.3 - - - +
372B PHE* 1.3 60.1 + - - +
374B GLN* 3.6 3.5 + - - +
375B ALA* 2.9 28.5 + - - +
1250B VAL* 5.9 8.1 - - - +
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Residues in contact with PHE 372 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
305B PHE* 4.2 31.6 - - + +
308B LEU* 5.4 4.3 - - + -
309B ALA* 4.6 8.3 - - + +
368B LEU 2.9 19.7 + - - +
369B GLN* 4.4 1.8 - - - +
371B THR* 1.3 74.3 - - - +
373B LEU* 1.3 58.8 + - - +
375B ALA* 3.5 8.3 - - - +
376B SER* 2.9 30.3 + - - -
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Residues in contact with LEU 373 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306B ARG* 6.0 0.7 - - - +
309B ALA* 4.2 13.6 - - + +
369B GLN 2.9 21.8 + - - +
370B ARG* 3.6 8.1 - - - +
372B PHE* 1.3 79.0 - - - +
374B GLN* 1.3 57.5 + - - +
375B ALA 3.3 0.2 + - - -
376B SER* 3.4 3.4 + - - -
377B TYR* 2.9 51.8 + - + +
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Residues in contact with GLN 374 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
370B ARG 2.9 17.6 + - - +
371B THR* 4.2 3.4 - - - +
373B LEU* 1.3 72.3 - - - +
375B ALA* 1.3 60.2 + - - +
377B TYR* 3.6 16.9 - - + +
378B TYR* 2.9 27.0 + - - +
1245B ASN 5.2 3.6 - - - +
1246B ARG* 5.3 11.3 - - - +
1249B GLU* 4.4 22.4 - - + -
1250B VAL* 5.4 4.7 - - + +
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Residues in contact with ALA 375 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
305B PHE* 5.7 8.1 - - + -
371B THR 2.9 20.0 + - - +
372B PHE* 3.5 11.0 - - - +
373B LEU 3.1 0.4 - - - -
374B GLN* 1.3 74.5 - - - +
376B SER* 1.3 59.9 + - - +
378B TYR* 3.0 10.4 + - - +
379B VAL* 2.9 27.9 + - - +
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Residues in contact with SER 376 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
302B SER* 2.5 43.4 + - - +
305B PHE* 4.1 12.1 - - - +
306B ARG* 4.0 13.0 - - - +
372B PHE 2.9 16.0 + - - -
373B LEU* 4.0 3.1 - - - -
375B ALA* 1.3 73.4 - - - +
377B TYR* 1.3 63.4 + - - +
379B VAL* 3.8 2.2 - - - +
380B ALA* 2.9 28.9 + - - +
436B PRO* 4.5 5.5 - - - +
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Residues in contact with TYR 377 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306B ARG* 6.5 0.7 - - + -
373B LEU* 2.9 37.7 + - + +
374B GLN* 3.6 17.5 - - + +
376B SER* 1.3 80.1 - - - +
378B TYR* 1.3 56.0 + - - +
380B ALA* 3.2 8.2 + - + +
381B ILE* 2.9 40.9 + - + +
433B PHE 5.9 2.5 - - - -
434B LEU* 5.9 4.3 - - + -
437B ASN* 4.8 20.8 - - + +
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Residues in contact with TYR 378 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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223B ASN* 5.8 5.5 - - + +
232B TRP* 3.4 40.3 - + - -
374B GLN 2.9 20.2 + - - +
375B ALA* 3.0 10.1 + - - +
377B TYR* 1.3 76.4 - - - +
379B VAL* 1.3 61.8 + - + +
381B ILE* 3.2 8.0 + - - +
382B GLU* 2.9 38.6 + - + +
1239B LEU* 5.1 8.8 - - + +
1242B THR* 3.7 36.8 - - - +
1243B ALA* 5.1 2.0 - - - -
1246B ARG* 5.1 9.0 - - + -
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Residues in contact with VAL 379 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
298B ARG* 5.1 8.3 - - + -
301B LEU* 5.5 7.0 - - + -
302B SER* 4.2 17.5 - - - -
375B ALA 2.9 14.4 + - - +
376B SER* 4.1 4.0 - - - +
378B TYR* 1.3 81.0 - - + +
380B ALA* 1.3 52.6 + - - +
382B GLU* 3.9 6.3 - - - +
383B THR* 2.3 41.3 + - - +
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Residues in contact with ALA 380 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
302B SER* 5.0 3.3 - - - -
376B SER 2.9 19.5 + - - +
377B TYR* 3.4 10.8 - - + +
378B TYR 3.2 0.2 - - - -
379B VAL* 1.3 76.0 - - - +
381B ILE* 1.3 60.6 + - + +
383B THR* 3.3 7.0 + - - -
384B GLY* 2.9 24.8 + - - -
432B PHE* 5.1 10.2 - - + +
433B PHE* 4.0 24.6 - - - +
436B PRO* 5.2 14.8 - - + -
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Residues in contact with ILE 381 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377B TYR* 2.9 27.7 + - + +
378B TYR* 3.2 4.7 + - - +
380B ALA* 1.3 73.3 - - + +
382B GLU* 1.3 60.9 + - - +
384B GLY* 3.3 2.6 + - - +
385B ILE* 2.9 26.4 + - + +
433B PHE* 3.6 37.7 - - + -
1238B SER* 4.2 18.6 - - - +
1239B LEU* 6.0 0.2 - - - -
1241B LEU* 5.6 10.5 - - + -
1242B THR* 4.0 34.3 - - - +
1245B ASN* 5.4 8.1 - - + -
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Residues in contact with GLU 382 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378B TYR* 2.9 29.3 + - + +
379B VAL* 4.0 7.2 - - - +
381B ILE* 1.3 77.5 - - - +
383B THR* 1.3 57.6 + - - +
385B ILE* 3.2 7.9 + - - +
386B ASN* 3.0 29.8 + - - +
1242B THR* 5.8 0.4 - - - -
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Residues in contact with THR 383 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295B PHE* 3.8 29.6 - - + -
298B ARG* 3.9 22.7 + - + +
299B LEU* 5.8 2.9 - - - +
379B VAL 2.3 26.2 + - - -
380B ALA* 3.5 8.2 - - - -
381B ILE 3.2 0.2 - - - -
382B GLU* 1.3 79.0 - - - +
384B GLY* 1.3 55.4 + - - +
386B ASN* 3.6 5.5 + - - +
387B LEU* 2.9 27.7 + - - +
432B PHE* 3.6 24.7 - - + -
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Residues in contact with GLY 384 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380B ALA 2.9 14.8 + - - -
381B ILE* 3.3 3.5 + - - -
383B THR* 1.3 74.7 - - - +
385B ILE* 1.3 59.6 + - - +
387B LEU* 3.3 8.3 - - - +
388B ARG* 2.9 32.2 + - - +
429B MET* 4.1 18.6 - - - +
432B PHE* 4.9 8.9 - - - -
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Residues in contact with ILE 385 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381B ILE* 2.9 14.3 + - + +
382B GLU* 3.2 12.5 + - - +
384B GLY* 1.3 76.6 - - - +
386B ASN* 1.3 58.7 + - - +
388B ARG* 3.6 13.7 - - - +
389B GLY* 3.0 26.7 + - - -
1235B ASN* 4.6 23.1 - - + +
1238B SER* 4.6 20.0 - - - -
1239B LEU 5.9 0.2 - - - +
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Residues in contact with ASN 386 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265B ARG* 5.8 5.4 - - - +
268B VAL* 3.3 36.6 - - + +
295B PHE* 5.0 2.7 - - + -
382B GLU 3.0 16.0 + - - +
383B THR* 4.0 5.6 - - - +
385B ILE* 1.3 75.9 - - - +
387B LEU* 1.3 56.1 + - - +
389B GLY* 3.9 1.1 - - - +
390B ALA* 2.9 33.5 + - - +
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Residues in contact with LEU 387 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295B PHE* 3.5 26.2 - - + -
383B THR 2.9 19.9 + - - +
384B GLY* 3.3 11.7 - - - +
385B ILE 3.1 0.2 - - - -
386B ASN* 1.3 76.2 - - - +
388B ARG* 1.3 58.8 + - - +
390B ALA* 3.3 2.0 + - - +
391B ILE* 2.9 35.2 + - - +
429B MET* 5.2 6.1 - - + -
432B PHE* 5.6 2.9 - - + -
----------------------------------------------------------
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Residues in contact with ARG 388 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384B GLY 2.9 17.6 + - - +
385B ILE* 3.6 13.7 - - - +
387B LEU* 1.3 76.4 - - - +
389B GLY* 1.3 54.2 + - - +
391B ILE* 4.8 3.1 - - - -
392B GLN* 2.7 40.0 + - - +
425B THR* 5.1 14.8 - - - +
426B ASN* 5.0 16.6 - - - +
429B MET* 4.6 17.2 - - + +
1234B ASN* 3.5 23.4 + - - +
1235B ASN* 4.6 3.4 - - - +
1238B SER* 3.4 30.0 - - - -
----------------------------------------------------------
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Residues in contact with GLY 389 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265B ARG* 6.0 2.5 - - - -
269B ALA* 5.7 0.7 - - - -
385B ILE 3.0 17.2 + - - -
386B ASN* 4.1 1.1 - - - -
388B ARG* 1.3 79.9 - - - +
390B ALA* 1.3 57.6 + - - +
392B GLN* 3.5 4.7 + - - +
393B THR* 2.9 27.9 + - - -
1228B LEU* 5.6 3.4 - - - +
1231B THR* 5.1 16.0 - - - -
1235B ASN* 6.2 1.6 - - - -
----------------------------------------------------------
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Residues in contact with ALA 390 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265B ARG 5.6 0.8 + - - -
268B VAL* 3.6 30.1 - - + +
269B ALA* 3.8 15.8 - - - +
272B ALA* 4.3 12.9 - - + +
295B PHE* 6.3 0.4 - - + -
386B ASN 2.9 21.5 + - - +
387B LEU* 4.0 1.6 - - - +
389B GLY* 1.3 74.4 - - - +
391B ILE* 1.3 59.8 + - - +
393B THR* 3.0 5.0 + - - -
394B LYS* 2.9 29.6 + - - +
----------------------------------------------------------
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Residues in contact with ILE 391 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
272B ALA* 6.2 0.4 - - - -
387B LEU 2.9 17.7 + - - +
388B ARG* 4.7 2.9 - - - +
390B ALA* 1.3 74.0 - - - +
392B GLN* 1.3 52.5 + - - +
394B LYS* 3.9 4.4 - - - +
395B ILE* 2.7 38.0 + - - +
425B THR* 6.5 0.4 - - - -
----------------------------------------------------------
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Residues in contact with GLN 392 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388B ARG 2.7 24.0 + - - +
389B GLY* 3.6 5.8 - - - +
391B ILE* 1.3 77.6 - - - +
393B THR* 1.3 57.8 + - - +
395B ILE* 3.9 5.2 - - - -
396B TYR* 2.9 48.5 + - + +
1204B PHE* 5.8 3.1 - - + -
1227B LEU* 5.3 1.2 - - - +
1231B THR* 5.2 11.4 - - - -
----------------------------------------------------------
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Residues in contact with THR 393 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
269B ALA* 4.1 20.0 - - - -
389B GLY 2.9 18.1 + - - -
390B ALA 3.0 6.2 + - - -
392B GLN* 1.3 75.9 - - - +
394B LYS* 1.3 57.9 + - - +
396B TYR* 4.7 0.4 - - - +
397B ASN* 2.9 34.0 + - - +
1227B LEU* 5.6 5.8 - - - +
1228B LEU* 5.2 12.8 - - - -
----------------------------------------------------------
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Residues in contact with LYS 394 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
269B ALA 6.1 0.4 - - - +
272B ALA* 5.8 7.0 - - + -
390B ALA 2.9 14.4 + - - +
391B ILE* 4.6 3.6 - - - +
393B THR* 1.3 74.3 - - - +
395B ILE* 1.3 52.4 + - - +
397B ASN* 4.2 5.2 - - - -
398B LYS* 2.7 37.9 + - - +
----------------------------------------------------------
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Residues in contact with ILE 395 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391B ILE 2.7 23.2 + - - +
392B GLN* 3.4 8.1 - - - +
393B THR 3.1 0.2 - - - -
394B LYS* 1.3 76.8 - - - +
396B TYR* 1.3 68.0 + - + +
398B LYS* 3.0 5.6 + - - +
399B ILE* 2.9 30.1 + - - +
421B VAL* 6.5 0.7 - - + -
613B PHE* 4.2 17.5 - - + -
----------------------------------------------------------
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Residues in contact with TYR 396 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392B GLN* 2.9 40.8 + - + +
395B ILE* 1.3 77.7 - - + +
397B ASN* 1.3 60.3 + - - +
399B ILE* 3.7 15.6 - - + +
400B MET* 2.8 32.7 + - - +
418B CYS* 4.4 18.6 + - + -
421B VAL* 4.9 8.7 - - + +
422B ALA* 5.1 3.5 + - - +
1204B PHE* 3.2 64.7 - + + +
1207B THR* 4.8 13.9 - - - -
1223B PHE* 5.3 2.7 - + + -
1227B LEU* 3.7 30.0 - - + +
----------------------------------------------------------
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Residues in contact with ASN 397 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
393B THR 2.9 22.1 + - - +
394B LYS* 4.2 4.7 - - - -
396B TYR* 1.3 78.4 - - - +
398B LYS* 1.3 57.1 + - - +
400B MET* 3.8 4.7 - - - +
401B HIS* 2.9 32.1 + - - +
1224B GLN* 6.3 4.0 - - + -
1227B LEU* 5.2 1.6 - - - +
----------------------------------------------------------
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Residues in contact with LYS 398 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394B LYS 2.7 23.7 + - - +
395B ILE* 3.0 5.8 + - - +
397B ASN* 1.3 75.0 - - - +
399B ILE* 1.3 61.0 + - - +
401B HIS* 3.3 3.2 + - - +
402B MET* 2.9 33.2 + - - +
613B PHE* 5.2 5.6 - - + -
----------------------------------------------------------
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Residues in contact with ILE 399 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395B ILE 2.9 15.8 + - - +
396B TYR* 3.7 24.7 - - + +
398B LYS* 1.3 77.1 - - - +
400B MET* 1.3 64.9 + - - +
401B HIS 3.5 0.2 + - - -
402B MET* 3.8 12.9 + - + +
403B SER* 4.0 11.1 + - - +
404B THR 5.9 3.8 - - - +
414B ALA* 6.6 0.2 - - + -
613B PHE* 3.7 34.3 - - + -
----------------------------------------------------------
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Residues in contact with MET 400 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396B TYR 2.8 22.7 + - - +
397B ASN* 3.9 5.8 - - - +
399B ILE* 1.3 80.8 - - + +
401B HIS* 1.3 57.7 + - - +
403B SER* 5.1 3.6 + - - -
1214B ILE* 5.7 8.7 - - + +
1220B GLU* 5.7 11.1 - - + +
1223B PHE* 6.3 3.8 - - + -
----------------------------------------------------------
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Residues in contact with HIS 401 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397B ASN 2.9 19.1 + - - +
398B LYS* 4.0 3.6 - - - +
400B MET* 1.3 79.3 - - - +
402B MET* 1.3 65.8 + - - +
403B SER* 4.9 1.5 - - - -
----------------------------------------------------------
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Residues in contact with MET 402 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
398B LYS 2.9 18.6 + - - +
399B ILE* 3.8 8.7 + - + +
400B MET 3.6 0.4 - - - -
401B HIS* 1.3 82.6 - - - +
403B SER* 1.3 72.0 + - - +
404B THR* 3.3 14.9 + - - +
615B SER 6.1 1.1 - - - +
----------------------------------------------------------
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Residues in contact with SER 403 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399B ILE* 4.0 13.1 + - - +
400B MET 5.5 3.1 - - - -
401B HIS 4.9 1.8 - - - -
402B MET* 1.3 80.5 - - - +
404B THR* 1.3 58.3 + - - +
406B ASN* 5.6 3.6 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il