Contacts of the helix formed by residues 351 - 403 (chain F) in PDB entry 5TWV
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PHE 351 (chain F).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94F LEU* 5.6 13.2 - - + -
326F HIS* 4.6 5.0 - - - +
348F SER* 3.6 12.8 + - - +
349F GLN 3.2 5.8 + - - +
350F GLU* 1.3 80.3 - - - +
352F LEU* 1.3 62.5 + - - +
353F GLY 3.6 2.2 - - - +
354F ASN* 3.8 15.9 - - + +
355F ALA* 2.9 27.1 + - - +
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Residues in contact with LEU 352 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
326F HIS* 4.4 24.0 - - + +
327F LEU* 6.0 1.6 - - + -
351F PHE* 1.3 72.6 - - - +
353F GLY* 1.3 66.7 + - - +
355F ALA* 3.1 16.8 + - - +
356F TYR* 3.2 28.4 + - + +
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Residues in contact with GLY 353 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93F ILE* 6.4 2.5 - - - -
351F PHE* 4.4 2.2 - - - +
352F LEU* 1.3 78.6 - - - +
354F ASN* 1.3 56.8 + - - +
356F TYR* 3.0 19.8 + - - +
357F VAL* 2.9 28.7 + - - +
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Residues in contact with ASN 354 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90F ALA* 5.6 11.4 - - + +
349F GLN 3.3 26.5 - - - +
350F GLU* 4.7 1.1 - - - -
351F PHE* 3.7 17.6 + - + +
352F LEU 3.3 0.4 - - - -
353F GLY* 1.3 71.7 - - - +
355F ALA* 1.3 53.2 + - - +
357F VAL* 4.5 4.9 - - - +
358F LEU* 2.6 42.6 + - + +
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Residues in contact with ALA 355 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319F CYS* 5.3 7.5 - - - +
322F GLY* 4.7 22.7 - - - +
323F ILE* 4.7 11.0 - - + +
326F HIS* 5.6 0.4 - - + -
350F GLU* 5.7 1.6 - - - +
351F PHE 2.9 20.0 + - - +
352F LEU* 3.1 9.8 + - - +
354F ASN* 1.3 75.7 - - - +
356F TYR* 1.3 60.5 + - + +
358F LEU* 3.8 2.9 - - - -
359F ALA* 2.9 29.5 + - - +
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Residues in contact with TYR 356 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323F ILE* 6.3 3.1 - - + -
327F LEU* 5.4 4.9 - - + +
352F LEU* 3.2 31.4 + - + +
353F GLY* 3.0 16.8 + - - +
355F ALA* 1.3 78.5 - - + +
357F VAL* 1.3 58.5 + - - +
359F ALA* 3.0 7.7 + - + +
360F VAL* 2.9 26.0 + - - +
1264F ALA* 4.4 15.2 - - + +
1267F SER* 4.4 6.5 - - - -
1268F ILE* 3.6 40.8 + - + -
1271F SER* 3.6 22.7 - - - -
1272F LEU* 4.5 8.4 - - + +
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Residues in contact with VAL 357 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90F ALA* 5.7 9.2 - - + -
353F GLY 2.9 13.2 + - - +
354F ASN* 4.8 3.6 - - - +
356F TYR* 1.3 77.1 - - - +
358F LEU* 1.3 57.1 + - - +
360F VAL* 3.5 8.5 + - - +
361F LEU* 2.9 25.1 + - - +
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Residues in contact with LEU 358 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319F CYS* 4.6 9.6 - - + +
354F ASN* 2.6 23.7 + - + +
355F ALA* 4.2 4.3 - - - +
357F VAL* 1.3 76.3 - - - +
359F ALA* 1.3 58.4 + - - +
361F LEU* 3.3 10.6 + - + +
362F LEU* 2.9 24.1 + - - +
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Residues in contact with ALA 359 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319F CYS* 4.9 9.6 - - + +
320F ILE* 6.6 0.2 - - - -
355F ALA 2.9 21.3 + - - +
356F TYR* 3.0 7.6 + - - +
358F LEU* 1.3 75.2 - - - +
360F VAL* 1.3 60.7 + - - +
361F LEU 3.2 0.2 - - - -
362F LEU* 3.1 11.0 + - - +
363F PHE* 2.9 23.9 + - - +
1264F ALA* 4.9 13.7 - - + -
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Residues in contact with VAL 360 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
356F TYR 2.9 12.1 + - - +
357F VAL* 3.7 11.0 - - - +
358F LEU 3.4 0.2 - - - -
359F ALA* 1.3 75.0 - - - +
361F LEU* 1.3 57.9 + - - +
363F PHE* 3.1 11.4 + - + +
364F LEU* 2.9 26.5 + - - +
1261F LEU* 5.3 13.5 - - + +
1264F ALA* 5.4 5.7 - - + +
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Residues in contact with LEU 361 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83F PHE* 5.7 9.3 - - + -
357F VAL 2.9 15.2 + - - +
358F LEU* 3.4 15.3 - - - +
359F ALA 3.2 0.2 - - - -
360F VAL* 1.3 77.6 - - - +
362F LEU* 1.3 57.5 + - - +
364F LEU* 3.8 7.5 - - - +
365F ALA* 2.9 29.3 + - - +
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Residues in contact with LEU 362 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316F GLY* 4.9 11.2 - - - +
319F CYS* 4.3 17.0 - - + -
358F LEU 2.9 13.2 + - - +
359F ALA* 3.1 13.2 + - - +
361F LEU* 1.3 73.6 - - - +
363F PHE* 1.3 60.7 + - - +
364F LEU 3.4 0.2 - - - -
365F ALA* 3.8 5.5 - - - +
366F LEU* 2.9 27.7 + - - +
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Residues in contact with PHE 363 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
359F ALA 2.9 12.5 + - - +
360F VAL* 3.1 14.6 + - + +
362F LEU* 1.3 78.1 - - - +
364F LEU* 1.3 56.6 + - - +
366F LEU* 3.2 8.1 + - - +
367F LEU* 2.9 26.3 + - - +
1257F ALA* 4.2 28.7 - - + +
1260F VAL* 4.8 11.9 - - + -
1261F LEU* 5.0 7.6 - - + +
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Residues in contact with LEU 364 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83F PHE* 5.9 9.2 - - + -
360F VAL 2.9 15.4 + - - +
361F LEU* 3.4 7.8 + - - +
363F PHE* 1.3 76.1 - - - +
365F ALA* 1.3 58.6 + - - +
367F LEU* 3.1 11.6 + - - +
368F LEU* 2.9 23.4 + - - +
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Residues in contact with ALA 365 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83F PHE* 6.0 9.1 - - + -
312F LEU* 3.7 19.2 - - + +
361F LEU 2.9 18.5 + - - +
362F LEU* 4.2 5.8 - - - +
364F LEU* 1.3 73.2 - - - +
366F LEU* 1.3 60.4 + - - +
368F LEU* 3.2 12.6 + - + +
369F GLN* 2.8 27.4 + - - +
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Residues in contact with LEU 366 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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312F LEU 5.8 0.9 - - - -
362F LEU 2.9 20.9 + - - +
363F PHE* 3.2 10.7 + - - +
365F ALA* 1.3 75.4 - - - +
367F LEU* 1.3 58.9 + - - +
369F GLN* 3.7 7.1 - - - +
370F ARG* 2.9 31.0 + - - +
1257F ALA* 5.6 4.5 - - + -
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Residues in contact with LEU 367 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
363F PHE 2.9 12.3 + - - +
364F LEU* 3.3 12.3 - - - +
366F LEU* 1.3 77.4 - - - +
368F LEU* 1.3 50.1 + - - +
370F ARG* 4.6 3.4 - - - +
371F THR* 2.6 41.5 + - - +
1253F GLU* 5.9 2.9 - - - -
1254F TYR* 5.9 6.5 - - + -
1257F ALA* 5.2 10.2 - - + +
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Residues in contact with LEU 368 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83F PHE* 6.4 2.0 - - + -
312F LEU* 5.0 6.1 - - + -
364F LEU 2.9 12.5 + - - +
365F ALA* 3.2 15.9 + - + +
367F LEU* 1.3 78.8 - - - +
369F GLN* 1.3 55.5 + - - +
371F THR* 4.3 3.4 - - - -
372F PHE* 2.9 32.4 + - - +
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Residues in contact with GLN 369 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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309F ALA* 3.8 15.2 - - - +
312F LEU* 3.7 19.1 - - + +
313F GLY* 3.8 19.3 - - - +
365F ALA 2.8 15.8 + - - +
366F LEU* 3.2 8.9 + - - +
367F LEU 3.2 0.2 - - - -
368F LEU* 1.3 75.7 - - - +
370F ARG* 1.3 60.9 + - - +
373F LEU* 2.9 30.1 + - - +
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Residues in contact with ARG 370 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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366F LEU 2.9 15.7 + - - +
367F LEU* 4.6 2.7 - - - +
369F GLN* 1.3 75.7 - - - +
371F THR* 1.3 59.4 + - - +
373F LEU* 3.6 5.9 - - - +
374F GLN* 2.9 31.2 + - - +
1249F GLU* 5.4 4.1 - - + +
1250F VAL* 6.0 2.9 - - - -
1253F GLU* 4.0 27.4 - - + -
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Residues in contact with THR 371 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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367F LEU 2.6 23.9 + - - -
368F LEU* 4.1 3.8 - - - -
370F ARG* 1.3 74.8 - - - +
372F PHE* 1.3 60.1 + - - +
374F GLN* 3.8 3.5 - - - +
375F ALA* 2.9 29.0 + - - +
1250F VAL* 5.9 8.1 - - - +
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Residues in contact with PHE 372 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
305F PHE* 4.2 31.1 - - + +
308F LEU* 5.4 4.0 - - + -
309F ALA* 4.6 8.5 - - + +
368F LEU 2.9 20.2 + - - +
369F GLN* 4.4 1.3 - - - +
371F THR* 1.3 74.6 - - - +
373F LEU* 1.3 60.0 + - - +
375F ALA* 3.5 7.9 - - - +
376F SER* 2.9 30.7 + - - -
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Residues in contact with LEU 373 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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306F ARG* 6.0 0.9 - - - +
309F ALA* 4.2 13.6 - - + +
369F GLN 2.9 22.6 + - - +
370F ARG* 3.6 8.5 - - - +
371F THR 3.2 0.2 - - - -
372F PHE* 1.3 77.9 - - - +
374F GLN* 1.3 57.9 + - - +
376F SER* 3.4 3.7 + - - -
377F TYR* 2.9 51.2 + - + +
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Residues in contact with GLN 374 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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370F ARG 2.9 17.0 + - - +
371F THR* 4.2 3.6 - - - +
373F LEU* 1.3 73.0 - - - +
375F ALA* 1.3 59.6 + - - +
377F TYR* 3.6 16.9 - - + +
378F TYR* 2.9 27.0 + - - +
1245F ASN 5.2 3.6 - - - +
1246F ARG* 5.3 11.4 - - + +
1249F GLU* 4.4 22.4 - - + -
1250F VAL* 5.4 5.4 - - + +
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Residues in contact with ALA 375 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
305F PHE* 5.7 7.4 - - + -
371F THR 2.9 20.3 + - - +
372F PHE* 3.5 10.8 - - - +
373F LEU 3.1 0.2 - - - -
374F GLN* 1.3 74.6 - - - +
376F SER* 1.3 60.0 + - - +
378F TYR* 3.0 10.0 + - - +
379F VAL* 2.9 28.3 + - - +
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Residues in contact with SER 376 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
302F SER* 2.5 44.3 + - - +
305F PHE* 4.1 13.1 - - - +
306F ARG* 4.0 12.2 - - - +
372F PHE 2.9 15.6 + - - -
373F LEU* 4.0 3.1 - - - -
375F ALA* 1.3 73.1 - - - +
377F TYR* 1.3 64.3 + - - +
379F VAL* 3.8 3.0 - - - +
380F ALA* 2.9 29.1 + - - +
436F PRO* 4.5 5.5 - - - +
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Residues in contact with TYR 377 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306F ARG* 6.5 0.7 - - + -
373F LEU* 2.9 37.9 + - + +
374F GLN* 3.6 17.0 - - + +
376F SER* 1.3 79.4 - - - +
378F TYR* 1.3 56.1 + - - +
380F ALA* 3.2 7.5 + - + +
381F ILE* 2.9 41.9 + - + +
433F PHE 5.9 2.7 - - - -
434F LEU* 5.9 4.5 - - + -
437F ASN* 4.8 20.8 - - + +
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Residues in contact with TYR 378 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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223F ASN* 5.8 5.2 - - + +
232F TRP* 3.4 40.5 - + - -
374F GLN 2.9 18.5 + - - +
375F ALA* 3.0 10.0 + - - +
377F TYR* 1.3 76.2 - - - +
379F VAL* 1.3 62.2 + - + +
381F ILE* 3.2 7.9 + - - +
382F GLU* 2.9 38.0 + - + +
1239F LEU* 5.1 9.7 - - + +
1242F THR* 3.7 37.4 - - - +
1243F ALA* 5.1 2.0 - - - -
1246F ARG* 5.1 7.0 - - + -
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Residues in contact with VAL 379 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
298F ARG* 5.1 8.1 - - + -
301F LEU* 5.5 6.5 - - + -
302F SER* 4.2 17.0 - - - -
375F ALA 2.9 14.4 + - - +
376F SER* 4.1 4.0 - - - +
378F TYR* 1.3 81.0 - - + +
380F ALA* 1.3 52.7 + - - +
382F GLU* 4.0 7.0 - - - +
383F THR* 2.3 40.9 + - - +
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Residues in contact with ALA 380 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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302F SER* 5.0 2.9 - - - -
376F SER 2.9 19.3 + - - +
377F TYR* 3.4 9.6 - - + +
378F TYR 3.2 0.2 - - - -
379F VAL* 1.3 74.9 - - - +
381F ILE* 1.3 61.6 + - + +
383F THR* 3.3 7.3 + - - -
384F GLY* 2.9 24.4 + - - -
432F PHE* 5.1 10.7 - - + +
433F PHE* 4.0 24.6 - - - +
434F LEU* 5.8 0.2 - - - -
436F PRO* 5.2 14.6 - - + -
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Residues in contact with ILE 381 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
377F TYR* 2.9 28.3 + - + +
378F TYR* 3.2 4.5 + - - +
380F ALA* 1.3 73.1 - - + +
382F GLU* 1.3 61.4 + - - +
384F GLY* 3.3 2.2 + - - -
385F ILE* 2.9 27.5 + - - +
433F PHE* 3.6 37.0 - - + -
1238F SER* 4.2 17.7 - - - +
1241F LEU* 5.6 10.8 - - + -
1242F THR* 4.0 35.4 - - - +
1245F ASN* 5.4 8.3 - - + -
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Residues in contact with GLU 382 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
378F TYR* 2.9 28.9 + - + +
379F VAL* 4.0 7.2 - - - +
381F ILE* 1.3 77.4 - - - +
383F THR* 1.3 57.9 + - - +
385F ILE* 3.2 8.3 + - - +
386F ASN* 3.0 30.1 + - - +
1242F THR* 5.8 0.4 - - - -
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Residues in contact with THR 383 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295F PHE* 3.8 29.8 - - + -
298F ARG* 3.9 22.6 + - + +
299F LEU* 5.8 2.2 - - - +
379F VAL 2.3 26.1 + - - -
380F ALA* 3.5 8.6 - - - -
381F ILE 3.2 0.2 - - - -
382F GLU* 1.3 77.8 - - - +
384F GLY* 1.3 56.8 + - - +
386F ASN* 3.6 4.9 + - - +
387F LEU* 2.9 27.9 + - - +
432F PHE* 3.6 25.1 - - + -
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Residues in contact with GLY 384 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
380F ALA 2.9 14.0 + - - -
381F ILE* 3.3 3.8 + - - -
383F THR* 1.3 74.1 - - - +
385F ILE* 1.3 60.5 + - - +
387F LEU* 3.3 8.7 - - - +
388F ARG* 2.9 33.5 + - - +
429F MET* 4.1 18.3 - - - +
432F PHE* 4.9 9.1 - - - -
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Residues in contact with ILE 385 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
381F ILE* 2.9 15.0 + - + +
382F GLU* 3.2 12.7 + - - +
384F GLY* 1.3 76.0 - - - +
386F ASN* 1.3 57.9 + - - +
388F ARG* 3.6 13.4 + - - +
389F GLY* 3.0 27.0 + - - -
1235F ASN* 4.6 23.8 - - + +
1238F SER* 4.6 19.1 - - - -
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Residues in contact with ASN 386 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265F ARG* 5.8 5.4 - - - +
268F VAL* 3.3 36.4 - - + +
295F PHE* 5.0 2.9 - - + -
382F GLU 3.0 15.4 + - - +
383F THR* 4.0 5.4 - - - +
385F ILE* 1.3 75.5 - - - +
387F LEU* 1.3 56.9 + - - +
389F GLY* 4.6 1.1 - - - +
390F ALA* 2.9 33.1 + - - +
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Residues in contact with LEU 387 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295F PHE* 3.5 25.6 - - + -
383F THR 2.9 19.5 + - - +
384F GLY* 3.3 11.9 - - - +
385F ILE 3.1 0.2 - - - -
386F ASN* 1.3 76.7 - - - +
388F ARG* 1.3 59.2 + - - +
390F ALA* 3.3 2.0 + - - +
391F ILE* 2.9 34.1 + - - +
429F MET* 5.2 6.3 - - + -
432F PHE* 5.6 2.9 - - + -
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Residues in contact with ARG 388 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
384F GLY 2.9 19.3 + - - +
385F ILE* 3.6 13.3 + - - +
387F LEU* 1.3 77.0 - - - +
389F GLY* 1.3 54.0 + - - +
391F ILE* 4.8 2.5 - - - -
392F GLN* 2.7 40.2 + - - +
425F THR* 5.1 14.8 - - - +
426F ASN* 5.0 16.9 - - - +
429F MET* 4.6 17.2 - - + +
1234F ASN* 3.5 24.5 + - - +
1235F ASN* 4.6 3.8 - - - +
1238F SER* 3.4 29.6 - - - -
----------------------------------------------------------
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Residues in contact with GLY 389 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265F ARG* 6.0 1.8 - - - -
269F ALA* 5.7 0.2 - - - -
385F ILE 3.0 17.2 + - - -
386F ASN* 4.1 0.9 - - - -
388F ARG* 1.3 79.7 - - - +
390F ALA* 1.3 57.9 + - - +
392F GLN* 3.5 4.6 + - - +
393F THR* 2.9 28.8 + - - -
1228F LEU* 5.6 3.6 - - - +
1231F THR* 5.1 15.5 - - - -
1235F ASN* 6.2 2.0 - - - -
----------------------------------------------------------
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Residues in contact with ALA 390 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265F ARG 5.6 0.8 + - - -
268F VAL* 3.6 30.7 - - + +
269F ALA* 3.8 15.6 - - - +
272F ALA* 4.3 13.2 - - + +
295F PHE* 6.3 0.4 - - + -
386F ASN 2.9 20.2 + - - +
387F LEU* 4.0 2.5 - - - +
389F GLY* 1.3 75.2 - - - +
391F ILE* 1.3 59.8 + - - +
393F THR* 3.0 4.7 + - - -
394F LYS* 2.9 30.0 + - - +
----------------------------------------------------------
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Residues in contact with ILE 391 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
272F ALA* 5.7 0.4 - - - +
387F LEU 2.9 17.5 + - - +
388F ARG* 4.7 2.7 - - - +
390F ALA* 1.3 74.6 - - - +
392F GLN* 1.3 52.5 + - - +
394F LYS* 4.6 4.4 - - - +
395F ILE* 2.7 38.1 + - - +
425F THR* 6.5 0.9 - - - -
----------------------------------------------------------
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Residues in contact with GLN 392 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
388F ARG 2.7 25.2 + - - +
389F GLY* 3.6 6.1 - - - +
391F ILE* 1.3 76.8 - - - +
393F THR* 1.3 57.2 + - - +
395F ILE* 3.9 4.9 - - - -
396F TYR* 2.9 50.8 + - + +
1204F PHE* 5.8 3.4 - - + -
1227F LEU* 5.3 0.8 - - - +
1231F THR* 5.2 11.2 - - - -
----------------------------------------------------------
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Residues in contact with THR 393 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
269F ALA* 4.1 20.2 - - - -
389F GLY 2.9 18.3 + - - -
390F ALA 3.0 5.8 + - - -
392F GLN* 1.3 76.0 - - - +
394F LYS* 1.3 58.0 + - - +
396F TYR* 4.3 1.0 - - - +
397F ASN* 2.9 33.9 + - - +
1227F LEU* 5.6 6.0 - - - +
1228F LEU* 5.2 12.6 - - - -
----------------------------------------------------------
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Residues in contact with LYS 394 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
269F ALA 6.1 0.9 - - - +
272F ALA* 5.8 7.2 - - + -
390F ALA 2.9 13.1 + - - +
391F ILE* 4.6 4.3 - - - +
393F THR* 1.3 73.7 - - - +
395F ILE* 1.3 52.3 + - - +
397F ASN* 4.2 5.6 - - - -
398F LYS* 2.7 38.6 + - - +
----------------------------------------------------------
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Residues in contact with ILE 395 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
391F ILE 2.7 24.2 + - - +
392F GLN* 3.4 8.5 - - - +
393F THR 3.1 0.6 - - - -
394F LYS* 1.3 77.1 - - - +
396F TYR* 1.3 67.1 + - + +
398F LYS* 3.0 6.5 + - - +
399F ILE* 2.9 29.4 + - - +
421F VAL* 6.5 0.4 - - + -
613F PHE* 4.2 16.7 - - + -
----------------------------------------------------------
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Residues in contact with TYR 396 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392F GLN* 2.9 40.7 + - + +
395F ILE* 1.3 76.8 - - + +
397F ASN* 1.3 62.0 + - - +
399F ILE* 3.7 16.1 - - + +
400F MET* 2.8 32.1 + - - +
418F CYS* 4.4 18.7 + - + -
421F VAL* 4.9 10.2 - - + +
422F ALA* 5.1 3.1 + - - +
1204F PHE* 3.2 64.5 - + + +
1207F THR* 4.8 14.4 - - - -
1223F PHE* 5.3 2.0 - + + -
1227F LEU* 3.7 30.5 - - + -
----------------------------------------------------------
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Residues in contact with ASN 397 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
393F THR 2.9 22.8 + - - +
394F LYS* 4.2 4.5 - - - -
396F TYR* 1.3 77.9 - - - +
398F LYS* 1.3 57.3 + - - +
400F MET* 3.8 4.1 - - - +
401F HIS* 2.9 32.9 + - - +
1224F GLN* 6.3 3.8 - - + -
1227F LEU* 5.2 1.8 - - - +
----------------------------------------------------------
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Residues in contact with LYS 398 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
394F LYS 2.7 23.3 + - - +
395F ILE* 3.0 6.5 + - - +
397F ASN* 1.3 76.0 - - - +
399F ILE* 1.3 60.9 + - - +
401F HIS* 3.3 3.1 + - - +
402F MET* 2.9 33.2 + - - +
613F PHE* 5.2 6.1 - - + -
----------------------------------------------------------
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Residues in contact with ILE 399 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395F ILE 2.9 17.3 + - - +
396F TYR* 3.7 24.0 - - + +
398F LYS* 1.3 75.7 - - - +
400F MET* 1.3 65.0 + - - +
401F HIS 3.5 0.2 + - - -
402F MET* 3.8 13.8 + - + +
403F SER* 4.0 11.9 + - - +
404F THR 5.9 3.6 - - - +
414F ALA* 6.6 0.2 - - + -
613F PHE* 3.7 34.5 - - + -
----------------------------------------------------------
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Residues in contact with MET 400 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396F TYR 2.8 22.4 + - - +
397F ASN* 3.9 6.1 - - - +
399F ILE* 1.3 81.3 - - + +
401F HIS* 1.3 58.0 + - - +
403F SER* 5.1 3.5 + - - -
1214F ILE* 5.7 8.7 - - + +
1220F GLU* 5.7 11.3 - - + +
1223F PHE* 6.3 3.4 - - + -
----------------------------------------------------------
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Residues in contact with HIS 401 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
397F ASN 2.9 19.4 + - - +
398F LYS* 4.0 3.4 - - - +
400F MET* 1.3 79.0 - - - +
402F MET* 1.3 66.6 + - - +
403F SER* 4.9 1.4 - - - -
----------------------------------------------------------
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Residues in contact with MET 402 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
398F LYS 2.9 18.5 + - - +
399F ILE* 3.8 9.4 + - + +
400F MET 3.6 0.6 - - - -
401F HIS* 1.3 82.4 - - - +
403F SER* 1.3 70.9 + - - +
404F THR* 3.3 15.6 + - - +
615F SER 6.1 1.6 - - - +
----------------------------------------------------------
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Residues in contact with SER 403 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
399F ILE* 4.0 13.1 + - - +
400F MET 5.5 3.1 - - - -
401F HIS 4.9 2.7 - - - -
402F MET* 1.3 80.9 - - - +
404F THR* 1.3 58.7 + - - +
406F ASN* 5.6 3.1 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il