Contacts of the helix formed by residues 457 - 508 (chain B) in PDB entry 5TWV
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 457 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
453B TYR* 4.7 13.7 - - - -
456B LEU* 1.3 75.1 - - - +
458B VAL* 1.3 61.5 + - - +
459B SER 3.3 2.0 - - - -
460B ALA* 3.1 8.6 + - - +
461B LEU* 3.0 26.4 + - - +
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Residues in contact with VAL 458 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456B LEU* 4.5 1.4 - - - +
457B GLY* 1.3 73.7 - - - +
459B SER* 1.3 59.9 + - - +
461B LEU* 3.4 9.2 + - - +
462B ILE* 2.9 28.1 + - - +
559B PHE* 5.4 3.3 - - + -
560B VAL* 4.8 1.4 - - - -
563B VAL* 4.5 7.8 - - + +
564B SER* 3.8 29.8 - - - +
567B LYS* 5.3 7.2 - - + -
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Residues in contact with SER 459 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452B LEU* 5.7 3.1 - - - -
455B ILE* 6.2 2.2 - - - -
456B LEU* 4.7 11.7 - - - -
457B GLY 3.3 1.0 - - - +
458B VAL* 1.3 77.9 - - - +
460B ALA* 1.3 57.6 + - - +
462B ILE* 3.2 1.4 + - - +
463B GLY* 2.9 27.4 + - - -
560B VAL* 3.7 32.7 - - - +
564B SER* 3.9 8.9 - - - -
575B VAL* 6.1 4.0 - - - -
579B SER* 5.7 8.7 - - - -
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Residues in contact with ALA 460 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449B VAL* 4.8 6.7 - - + +
452B LEU* 4.3 24.9 + - + +
453B TYR* 4.7 7.0 - - + +
456B LEU 4.2 12.6 + - - +
457B GLY* 3.1 11.2 + - - +
459B SER* 1.3 74.9 - - - +
461B LEU* 1.3 57.2 + - - +
463B GLY 4.7 0.2 - - - +
464B ALA* 2.7 42.8 + - + +
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Residues in contact with LEU 461 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
457B GLY 3.0 12.9 + - - +
458B VAL* 3.6 11.7 - - - +
459B SER 3.3 0.2 - - - -
460B ALA* 1.3 76.1 - - - +
462B ILE* 1.3 58.3 + - - +
464B ALA* 4.7 1.3 - - - -
465B ALA* 2.8 34.9 + - - +
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Residues in contact with ILE 462 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458B VAL 2.9 17.1 + - - +
459B SER 3.2 4.6 + - - +
461B LEU* 1.3 77.8 - - - +
463B GLY* 1.3 57.8 + - - +
465B ALA* 3.8 2.9 - - - +
466B VAL* 2.9 28.2 + - - +
556B LEU* 3.7 24.3 - - + +
559B PHE* 3.8 31.2 - - + -
560B VAL* 3.8 6.7 - - + -
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Residues in contact with GLY 463 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
459B SER 2.9 13.7 + - - -
462B ILE* 1.3 74.5 - - - +
464B ALA* 1.3 60.3 + - - +
466B VAL* 3.1 3.5 + - - +
467B ILE* 2.9 28.9 + - - +
556B LEU* 4.0 13.4 - - - +
560B VAL* 5.3 0.8 - - - +
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Residues in contact with ALA 464 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449B VAL* 5.8 7.6 - - + -
460B ALA* 2.7 25.4 + - + +
461B LEU* 4.6 1.3 - - - +
463B GLY* 1.3 73.4 - - - +
465B ALA* 1.3 59.6 + - - +
467B ILE* 3.7 5.0 + - - +
468B ILE* 2.9 29.9 + - - +
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Residues in contact with ALA 465 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
461B LEU 2.8 23.2 + - - +
462B ILE* 3.9 3.4 - - - +
464B ALA* 1.3 76.0 - - - +
466B VAL* 1.3 58.7 + - - +
468B ILE* 3.7 8.1 - - - +
469B LEU* 2.9 30.0 + - - +
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Residues in contact with VAL 466 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462B ILE 2.9 19.7 + - - +
463B GLY* 3.1 5.8 + - - +
465B ALA* 1.3 74.7 - - - +
467B ILE* 1.3 60.0 + - - +
469B LEU* 3.6 4.0 + - - +
470B LEU* 2.9 29.6 + - - +
552B ILE* 4.2 20.9 - - + +
553B ALA* 4.8 4.3 - - + -
556B LEU* 3.8 19.7 - - + -
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Residues in contact with ILE 467 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
463B GLY 2.9 15.6 + - - +
464B ALA* 4.2 4.5 - - - +
466B VAL* 1.3 76.8 - - - +
468B ILE* 1.3 57.7 + - - +
470B LEU* 3.7 7.6 - - - +
471B ALA* 3.0 33.1 + - - +
586B LEU* 5.5 11.0 - - + -
590B LEU* 4.9 16.1 - - + +
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Residues in contact with ILE 468 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
464B ALA 2.9 21.0 + - - +
465B ALA* 3.7 9.6 - - - +
466B VAL 3.3 0.4 - - - -
467B ILE* 1.3 77.8 - - - +
469B LEU* 1.3 55.5 + - - +
471B ALA* 5.1 1.7 - - - +
472B PRO* 3.5 17.8 - - - +
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Residues in contact with LEU 469 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
465B ALA 2.9 15.3 + - - +
466B VAL* 4.2 3.6 - - - +
468B ILE* 1.3 78.2 - - - +
470B LEU* 1.3 61.5 + - - +
471B ALA 3.3 0.9 - - - -
472B PRO* 3.4 11.9 - - - +
473B VAL* 3.8 13.3 + - - +
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Residues in contact with LEU 470 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466B VAL 2.9 21.0 + - - +
467B ILE* 3.0 9.8 + - - +
469B LEU* 1.3 76.5 - - - +
471B ALA* 1.3 63.6 + - - +
473B VAL* 3.9 5.6 + - - +
474B GLN* 3.2 22.7 + - - +
549B ALA* 5.3 14.6 - - + +
552B ILE* 5.5 6.5 - - + -
590B LEU* 5.5 7.4 - - + -
591B PHE* 4.6 11.0 - - + -
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Residues in contact with ALA 471 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
467B ILE 3.0 13.3 + - - +
468B ILE* 5.1 1.6 - - - +
470B LEU* 1.3 78.6 - - - +
472B PRO* 1.4 63.8 - - + +
474B GLN* 2.9 20.8 + - - +
475B TYR* 3.0 27.0 + - + -
590B LEU* 5.2 11.6 - - + +
593B LEU* 6.3 1.6 - - + -
594B SER* 4.2 9.0 - - - +
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Residues in contact with PRO 472 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
468B ILE 3.5 17.3 - - - +
469B LEU* 3.4 15.5 - - - +
471B ALA* 1.4 91.4 - - + +
473B VAL* 1.3 51.7 + - - +
475B TYR* 3.6 24.7 - - + +
476B PHE* 2.7 39.9 + - + +
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Residues in contact with VAL 473 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
469B LEU 3.8 12.8 + - - +
470B LEU* 4.2 4.9 - - - +
471B ALA 3.3 0.6 - - - -
472B PRO* 1.3 79.0 - - - +
474B GLN* 1.3 58.5 + - - +
476B PHE* 4.8 2.2 - - - -
477B VAL* 2.7 40.4 + - + +
545B PHE* 5.8 4.1 - - + +
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Residues in contact with GLN 474 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470B LEU 3.2 16.0 + - - +
471B ALA* 2.9 13.6 + - - +
473B VAL* 1.3 78.0 - - - +
475B TYR* 1.3 58.6 + - - +
477B VAL* 4.6 0.2 - - - +
478B ALA* 2.8 33.1 + - - +
590B LEU 5.7 0.4 - - - +
591B PHE* 3.7 33.7 - - + -
594B SER* 4.3 11.0 - - - -
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Residues in contact with TYR 475 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
471B ALA* 3.0 30.0 + - + -
472B PRO* 3.6 29.9 - - + +
474B GLN* 1.3 75.9 - - - +
476B PHE* 1.3 70.1 + + + +
478B ALA* 3.8 4.2 - - - +
479B THR* 2.9 28.0 + - - -
594B SER* 3.8 32.1 - - - +
597B VAL* 5.6 7.2 - - + -
598B ARG* 5.4 12.0 - - + +
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Residues in contact with PHE 476 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
472B PRO* 2.7 23.5 + - + +
473B VAL* 5.7 1.6 - - - -
475B TYR* 1.3 89.5 - + + +
477B VAL* 1.3 61.5 - - + +
479B THR* 3.2 9.5 + - - -
480B LYS* 2.9 29.5 + - + +
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Residues in contact with VAL 477 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
473B VAL* 2.7 27.2 + - + +
476B PHE* 1.3 82.0 - - + +
478B ALA* 1.3 56.5 + - - +
480B LYS* 3.2 10.0 + - - +
481B LEU* 2.9 26.0 + - - +
542B ILE* 3.9 22.3 - - + +
545B PHE* 5.0 10.8 - - + -
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Residues in contact with ALA 478 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474B GLN 2.8 23.8 + - - +
475B TYR* 4.1 5.2 - - - +
477B VAL* 1.3 75.6 - - - +
479B THR* 1.3 58.8 + - - +
481B LEU* 3.4 9.5 + - - +
482B SER* 2.9 25.5 + - - -
542B ILE* 5.4 1.6 - - - -
598B ARG* 5.2 14.8 + - - +
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Residues in contact with THR 479 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
475B TYR* 2.9 20.5 + - - -
476B PHE* 3.2 13.0 + - - -
478B ALA* 1.3 75.4 - - - +
480B LYS* 1.3 58.8 + - - +
482B SER* 3.1 9.6 + - - -
483B GLN* 2.9 27.2 + - - +
598B ARG* 6.2 1.1 - - - +
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Residues in contact with LYS 480 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
476B PHE* 2.9 19.2 + - + +
477B VAL* 3.4 12.3 - - - +
479B THR* 1.3 78.1 - - - +
481B LEU* 1.3 55.4 + - - +
483B GLN* 3.5 7.7 + - - +
484B ALA* 2.9 27.1 + - - +
538B VAL* 6.1 0.2 - - - +
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Residues in contact with LEU 481 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477B VAL 2.9 14.0 + - - +
478B ALA* 3.6 11.2 - - - +
479B THR 3.3 0.2 - - - -
480B LYS* 1.3 76.6 - - - +
482B SER* 1.3 57.6 + - - +
484B ALA* 3.4 9.8 + - - +
485B GLN* 2.9 25.8 + - - +
538B VAL 5.8 0.9 - - - -
539B TYR* 4.5 25.2 - - + +
542B ILE* 4.5 8.3 - - + +
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Residues in contact with SER 482 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
478B ALA 2.9 15.2 + - - -
479B THR* 3.1 13.2 + - - -
481B LEU* 1.3 74.6 - - - +
483B GLN* 1.3 59.3 + - - +
485B GLN* 3.1 10.4 + - - +
486B ARG* 2.9 24.6 + - - +
598B ARG* 5.3 11.9 - - - -
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Residues in contact with GLN 483 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
479B THR 2.9 14.9 + - - +
480B LYS* 3.8 7.2 - - - +
482B SER* 1.3 74.0 - - - +
484B ALA* 1.3 58.1 + - - +
486B ARG* 3.1 9.1 + - + +
487B THR* 2.9 30.7 + - - -
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Residues in contact with ALA 484 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
480B LYS 2.9 19.1 + - - +
481B LEU* 3.4 11.7 - - - +
482B SER 3.2 0.2 - - - -
483B GLN* 1.3 76.6 - - - +
485B GLN* 1.3 48.8 + - - +
487B THR* 4.7 2.7 - - - +
488B THR* 2.7 41.0 + - - +
535B ALA* 4.0 29.3 - - + +
538B VAL* 5.1 6.7 - - + -
539B TYR* 4.8 7.6 - - + +
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Residues in contact with GLN 485 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481B LEU 2.9 13.8 + - - +
482B SER* 3.1 12.5 + - - +
484B ALA* 1.3 73.7 - - - +
486B ARG* 1.3 54.0 + - - +
488B THR* 4.3 4.3 - - - -
489B LEU* 2.7 37.4 + - - +
1134B GLN* 5.9 5.8 - - - +
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Residues in contact with ARG 486 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
482B SER 2.9 11.5 + - - +
483B GLN* 3.1 12.5 + - - +
485B GLN* 1.3 76.2 - - - +
487B THR* 1.3 60.2 + - - +
489B LEU* 3.2 5.4 + - - +
490B GLU* 2.9 26.0 + - - +
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Residues in contact with THR 487 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
483B GLN 2.9 15.6 + - - -
484B ALA* 4.6 2.5 - - - -
486B ARG* 1.3 73.6 - - - +
488B THR* 1.3 60.9 + - - +
490B GLU* 3.1 9.5 + - - +
491B HIS* 2.9 28.1 + - - +
535B ALA* 5.9 2.9 - - - -
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Residues in contact with THR 488 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484B ALA 2.7 23.2 + - - -
485B GLN* 4.3 3.6 - - - -
487B THR* 1.3 77.1 - - - +
489B LEU* 1.3 56.6 + - - +
491B HIS* 3.9 2.2 - - - +
492B SER* 2.9 29.6 + - - -
532B SER* 4.1 22.4 - - - +
535B ALA* 4.0 19.1 - - - +
536B PHE 5.6 0.2 - - - -
1134B GLN* 5.6 6.5 - - - -
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Residues in contact with LEU 489 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
485B GLN 2.7 24.8 + - - +
486B ARG* 3.5 7.4 - - - +
487B THR 3.2 0.2 - - - -
488B THR* 1.3 75.5 - - - +
490B GLU* 1.3 59.4 + - - +
492B SER* 3.8 5.8 - - - -
493B ASN* 2.9 27.7 + - - +
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Residues in contact with GLU 490 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
486B ARG 2.9 13.1 + - - +
487B THR* 3.1 11.6 + - - +
489B LEU* 1.3 75.2 - - - +
491B HIS* 1.3 60.2 + - - +
493B ASN* 3.1 9.3 + - - +
494B GLU* 2.9 24.3 + - - +
----------------------------------------------------------
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Residues in contact with HIS 491 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
487B THR 2.9 14.9 + - - +
488B THR* 4.1 3.4 - - - +
490B GLU* 1.3 76.1 - - - +
492B SER* 1.3 57.9 + - - +
494B GLU* 3.2 7.9 + - - +
495B ARG* 2.9 22.7 + - - +
528B LYS* 3.5 41.6 - - + +
531B THR* 4.9 5.4 - - - -
532B SER* 4.3 10.1 - - - +
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Residues in contact with SER 492 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488B THR 2.9 20.2 + - - -
489B LEU* 3.9 6.3 - - - -
491B HIS* 1.3 74.0 - - - +
493B ASN* 1.3 60.5 + - - +
495B ARG* 3.2 11.9 + - - +
496B LEU* 2.9 25.1 + - - +
532B SER* 5.2 3.7 - - - -
1130B ASN* 5.5 11.0 - - - -
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Residues in contact with ASN 493 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
489B LEU 2.9 19.3 + - - +
490B GLU* 3.1 10.3 + - - +
492B SER* 1.3 74.6 - - - +
494B GLU* 1.3 58.7 + - - +
496B LEU* 3.2 9.4 + - - +
497B LYS* 2.9 26.3 + - - +
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Residues in contact with GLU 494 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
490B GLU 2.9 12.4 + - - +
491B HIS* 3.2 13.4 + - - +
493B ASN* 1.3 75.0 - - - +
495B ARG* 1.3 59.8 + - - +
497B LYS* 3.3 8.6 + - - +
498B GLN* 2.9 28.4 + - - +
528B LYS* 4.4 10.3 - - + -
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Residues in contact with ARG 495 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491B HIS 2.9 13.3 + - - +
492B SER* 3.2 14.8 + - - +
494B GLU* 1.3 75.4 - - - +
496B LEU* 1.3 58.5 + - - +
498B GLN* 3.7 6.2 + - - +
499B THR* 2.9 27.4 + - - -
525B THR* 5.7 12.6 - - - +
528B LYS* 4.9 5.3 - - + +
529B GLU* 6.0 3.8 - - + +
1098B HIS* 5.9 6.3 - - + -
1126B SER* 5.8 1.1 - - - -
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Residues in contact with LEU 496 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
492B SER 2.9 13.5 + - - +
493B ASN* 3.2 12.5 + - - +
495B ARG* 1.3 75.3 - - - +
497B LYS* 1.3 59.5 + - - +
499B THR* 3.4 7.8 - - - -
500B ASN* 2.9 29.3 + - - +
1126B SER* 5.2 8.5 - - - +
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Residues in contact with LYS 497 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
493B ASN 2.9 15.8 + - - +
494B GLU* 3.3 9.8 + - - +
496B LEU* 1.3 77.4 - - - +
498B GLN* 1.3 56.9 + - - +
500B ASN* 3.7 4.6 + - - +
501B GLU* 2.9 27.5 + - - +
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Residues in contact with GLN 498 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
494B GLU 2.9 16.9 + - - +
495B ARG* 3.7 6.3 - - - +
497B LYS* 1.3 75.3 - - - +
499B THR* 1.3 58.6 + - - +
501B GLU* 3.6 9.3 - - + +
502B MET* 2.9 25.5 + - - +
521B ARG* 4.8 23.8 - - + +
524B VAL* 5.6 5.4 - - + -
525B THR* 5.4 9.6 - - - +
----------------------------------------------------------
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Residues in contact with THR 499 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495B ARG 2.9 19.8 + - - -
496B LEU* 3.1 10.9 + - - -
498B GLN* 1.3 76.1 - - - +
500B ASN* 1.3 60.5 + - - +
502B MET* 3.1 9.1 + - - +
503B LEU* 2.9 22.5 + - - +
1122B LEU* 4.0 25.3 - - - +
1125B PHE* 6.0 4.0 - - - -
1126B SER* 5.2 12.1 - - - -
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Residues in contact with ASN 500 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
496B LEU 2.9 15.9 + - - +
497B LYS* 4.3 4.3 - - - +
499B THR* 1.3 72.6 - - - +
501B GLU* 1.3 60.7 + - - +
503B LEU* 3.2 12.6 + - + +
504B ARG* 2.9 23.6 + - - +
1122B LEU* 5.8 1.8 - - - -
----------------------------------------------------------
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Residues in contact with GLU 501 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
497B LYS 2.9 20.5 + - - +
498B GLN* 3.6 12.1 - - + +
500B ASN* 1.3 78.1 - - - +
502B MET* 1.3 55.5 - - - +
504B ARG* 3.3 11.7 + - - +
505B GLY* 2.9 20.3 + - - -
517B ILE* 5.7 2.5 - - - +
1432B PHE* 6.2 1.8 - - + -
1433B SER* 5.3 16.4 - - - +
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Residues in contact with MET 502 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
498B GLN 2.9 16.0 + - - +
499B THR* 3.1 12.3 + - - +
501B GLU* 1.3 73.8 - - - +
503B LEU* 1.3 60.2 + - - +
504B ARG 3.2 0.4 - - - -
505B GLY* 3.1 5.3 + - - +
506B MET* 2.9 24.8 + - - +
517B ILE* 5.7 6.1 - - + -
521B ARG* 5.3 9.6 - - + -
1122B LEU* 5.8 2.5 - - + -
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Residues in contact with LEU 503 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
499B THR 2.9 11.2 + - - +
500B ASN* 3.2 17.2 + - + +
502B MET* 1.3 76.6 - - - +
504B ARG* 1.3 56.6 + - - +
506B MET* 3.2 10.1 + - - +
507B LYS* 2.9 24.3 + - - +
1118B LEU* 5.5 6.3 - - + -
1122B LEU* 4.6 21.0 - - + +
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Residues in contact with ARG 504 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
500B ASN 2.9 12.0 + - - +
501B GLU* 3.3 14.8 - - - +
502B MET 3.2 0.2 - - - -
503B LEU* 1.3 77.2 - - - +
505B GLY* 1.3 57.1 + - - +
507B LYS* 3.1 12.1 + - + +
508B LEU* 2.9 26.2 + - - +
1430B VAL* 4.1 10.8 - - + +
1431B LEU 5.2 9.4 - - - +
----------------------------------------------------------
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Residues in contact with GLY 505 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
501B GLU 2.9 13.8 + - - -
502B MET* 3.1 8.3 + - - -
504B ARG* 1.3 75.2 - - - +
506B MET* 1.3 59.2 + - - +
508B LEU* 3.1 21.9 + - - +
509B LEU 3.9 2.6 - - - +
513B ALA* 3.5 24.2 - - - +
517B ILE* 5.0 8.5 - - - -
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Residues in contact with MET 506 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
502B MET 2.9 12.2 + - - +
503B LEU* 3.2 11.9 + - - +
505B GLY* 1.3 74.5 - - - +
507B LYS* 1.3 61.8 + - - +
508B LEU 3.7 5.4 - - - +
1110B MET* 5.6 9.0 - - + +
1113B PHE* 5.7 9.6 - - + +
1114B GLU* 5.3 11.0 - - - +
----------------------------------------------------------
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Residues in contact with LYS 507 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
503B LEU 2.9 13.8 + - - +
504B ARG* 3.1 16.3 + - + +
506B MET* 1.3 75.0 - - - +
508B LEU* 1.3 61.3 + - - +
1430B VAL* 4.7 9.4 - - + +
----------------------------------------------------------
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Residues in contact with LEU 508 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
504B ARG 2.9 14.2 + - - +
505B GLY* 3.1 11.9 + - - +
506B MET 3.7 6.6 - - - +
507B LYS* 1.3 80.9 - - - +
509B LEU* 1.3 68.0 + - - +
513B ALA* 3.8 14.4 - - + +
1430B VAL* 4.0 24.0 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il