Contacts of the helix formed by residues 457 - 508 (chain H) in PDB entry 5TWV
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 457 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
453H TYR* 4.7 13.2 - - - -
456H LEU* 1.3 76.7 - - - +
458H VAL* 1.3 60.8 + - - +
459H SER 3.3 1.8 - - - -
460H ALA* 3.1 8.2 + - - +
461H LEU* 3.0 26.1 + - - +
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Residues in contact with VAL 458 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456H LEU* 4.5 1.6 - - - +
457H GLY* 1.3 73.4 - - - +
459H SER* 1.3 61.1 + - - +
461H LEU* 3.4 9.2 + - - +
462H ILE* 2.9 27.9 + - - +
559H PHE* 5.4 3.0 - - + -
560H VAL* 4.8 1.9 - - - -
563H VAL* 4.5 8.6 - - + +
564H SER* 3.8 28.9 - - - +
567H LYS* 5.3 7.6 - - + -
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Residues in contact with SER 459 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452H LEU* 5.7 2.7 - - - -
455H ILE* 6.2 2.5 - - - -
456H LEU* 4.7 11.9 - - - -
457H GLY 3.3 1.2 - - - +
458H VAL* 1.3 78.8 - - - +
460H ALA* 1.3 57.1 + - - +
462H ILE* 3.2 1.0 + - - +
463H GLY* 2.9 28.1 + - - -
560H VAL* 3.7 33.3 - - - +
564H SER* 3.9 8.4 - - - -
575H VAL* 6.1 4.0 - - - -
579H SER* 5.7 9.0 - - - -
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Residues in contact with ALA 460 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449H VAL* 4.8 6.3 - - + +
452H LEU* 4.3 26.1 + - + +
453H TYR* 4.7 6.5 - - + +
456H LEU 4.2 12.7 + - - +
457H GLY* 3.1 11.4 + - - +
459H SER* 1.3 75.7 - - - +
461H LEU* 1.3 56.4 + - - +
464H ALA* 2.7 42.7 + - + +
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Residues in contact with LEU 461 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
457H GLY 3.0 12.9 + - - +
458H VAL* 3.6 12.1 - - - +
459H SER 3.3 0.2 - - - -
460H ALA* 1.3 78.1 - - - +
462H ILE* 1.3 57.0 + - - +
464H ALA* 4.7 1.1 - - - -
465H ALA* 2.8 34.2 + - - +
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Residues in contact with ILE 462 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458H VAL 2.9 17.0 + - - +
459H SER 3.2 4.7 + - - +
461H LEU* 1.3 78.5 - - - +
463H GLY* 1.3 58.0 + - - +
465H ALA* 3.8 3.2 - - - +
466H VAL* 2.9 28.2 + - - +
556H LEU* 3.7 24.7 - - + +
559H PHE* 3.8 30.5 - - + -
560H VAL* 3.8 6.3 - - + -
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Residues in contact with GLY 463 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
459H SER 2.9 13.4 + - - -
460H ALA* 5.4 0.2 - - - -
462H ILE* 1.3 74.4 - - - +
464H ALA* 1.3 61.4 + - - +
466H VAL* 3.1 3.2 + - - +
467H ILE* 2.9 28.9 + - - +
556H LEU* 4.0 13.9 - - - +
560H VAL* 5.3 0.6 - - - +
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Residues in contact with ALA 464 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449H VAL* 5.8 8.5 - - + -
460H ALA* 2.7 25.2 + - + +
461H LEU* 4.6 2.0 - - - +
463H GLY* 1.3 73.6 - - - +
465H ALA* 1.3 59.9 + - - +
467H ILE* 4.1 5.0 - - - +
468H ILE* 2.9 30.1 + - - +
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Residues in contact with ALA 465 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
461H LEU 2.8 23.2 + - - +
462H ILE* 3.9 3.6 - - - +
464H ALA* 1.3 75.8 - - - +
466H VAL* 1.3 58.6 + - - +
468H ILE* 3.7 7.6 - - - +
469H LEU* 2.9 30.1 + - - +
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Residues in contact with VAL 466 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462H ILE 2.9 17.8 + - - +
463H GLY* 3.1 7.1 + - - +
465H ALA* 1.3 75.8 - - - +
467H ILE* 1.3 61.2 + - - +
469H LEU* 3.6 4.1 + - - +
470H LEU* 2.9 29.2 + - - +
552H ILE* 4.2 21.4 - - + +
553H ALA* 4.8 4.0 - - + -
556H LEU* 3.8 18.6 - - + -
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Residues in contact with ILE 467 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
463H GLY 2.9 14.7 + - - +
464H ALA* 4.2 4.7 - - - +
466H VAL* 1.3 76.1 - - - +
468H ILE* 1.3 57.7 + - - +
470H LEU* 3.8 7.6 - - - -
471H ALA* 3.0 33.4 + - - +
586H LEU* 5.5 11.4 - - + +
590H LEU* 4.9 16.8 - - + +
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Residues in contact with ILE 468 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
464H ALA 2.9 21.5 + - - +
465H ALA* 3.7 10.1 - - - +
466H VAL 3.3 0.2 - - - -
467H ILE* 1.3 76.8 - - - +
469H LEU* 1.3 55.8 + - - +
471H ALA* 5.1 1.6 - - - +
472H PRO* 3.5 18.0 - - - +
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Residues in contact with LEU 469 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
465H ALA 2.9 16.3 + - - +
466H VAL* 4.2 3.6 - - - +
468H ILE* 1.3 77.9 - - - +
470H LEU* 1.3 61.3 + - - +
471H ALA 3.3 1.1 - - - -
472H PRO* 3.4 11.8 - - - +
473H VAL* 3.8 12.6 + - - +
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Residues in contact with LEU 470 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466H VAL 2.9 19.9 + - - +
467H ILE* 3.0 10.0 + - - +
469H LEU* 1.3 77.4 - - - +
471H ALA* 1.3 63.9 + - - +
473H VAL* 3.9 5.4 + - - +
474H GLN* 3.2 22.5 + - - +
549H ALA* 5.3 14.7 - - + +
552H ILE* 5.5 7.0 - - + -
590H LEU* 5.5 7.9 - - + -
591H PHE* 4.6 9.8 - - + -
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Residues in contact with ALA 471 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
467H ILE 3.0 14.7 + - - +
468H ILE* 5.1 1.6 - - - +
470H LEU* 1.3 77.5 - - - +
472H PRO* 1.4 63.8 - - + +
474H GLN* 2.9 20.5 + - - +
475H TYR* 3.0 27.1 + - + -
590H LEU* 5.2 12.3 - - + +
593H LEU* 6.3 1.8 - - + -
594H SER* 4.2 9.1 - - - +
----------------------------------------------------------
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Residues in contact with PRO 472 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
468H ILE 3.5 17.7 - - - +
469H LEU* 3.4 15.3 - - - +
471H ALA* 1.4 91.5 - - + +
473H VAL* 1.3 52.1 + - - +
475H TYR* 3.6 25.1 - - + +
476H PHE* 2.7 41.3 + - + +
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Residues in contact with VAL 473 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
469H LEU 3.8 13.2 + - - +
470H LEU* 4.2 4.7 - - - +
471H ALA 3.3 0.6 - - - -
472H PRO* 1.3 78.4 - - - +
474H GLN* 1.3 58.4 + - - +
476H PHE* 4.8 2.2 - - - -
477H VAL* 2.7 39.6 + - + +
545H PHE* 5.8 4.1 - - + +
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Residues in contact with GLN 474 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470H LEU 3.2 16.5 + - - +
471H ALA* 2.9 13.8 + - - +
473H VAL* 1.3 77.4 - - - +
475H TYR* 1.3 58.7 + - - +
478H ALA* 2.8 32.6 + - - +
590H LEU 6.0 0.4 - - - -
591H PHE* 3.7 33.7 - - + -
594H SER* 4.3 10.3 - - - -
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Residues in contact with TYR 475 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
471H ALA* 3.0 29.8 + - + -
472H PRO* 3.6 30.0 - - + +
474H GLN* 1.3 75.3 - - - +
476H PHE* 1.3 70.2 + + + +
478H ALA* 3.8 5.0 - - - +
479H THR* 2.9 27.4 + - - -
594H SER* 3.8 31.9 - - - +
597H VAL* 5.6 8.1 - - + -
598H ARG* 5.4 11.8 - - + +
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Residues in contact with PHE 476 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
472H PRO* 2.7 23.3 + - + +
473H VAL* 5.7 1.6 - - - -
475H TYR* 1.3 88.4 - + + +
477H VAL* 1.3 63.2 + - + +
479H THR* 3.2 9.6 + - - -
480H LYS* 2.9 29.8 + - + +
----------------------------------------------------------
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Residues in contact with VAL 477 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
473H VAL* 2.7 26.8 + - + +
476H PHE* 1.3 83.4 - - + +
478H ALA* 1.3 56.5 + - - +
480H LYS* 3.2 9.9 + - - +
481H LEU* 2.9 25.8 + - - +
542H ILE* 3.9 21.4 - - + +
545H PHE* 5.0 11.0 - - + -
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Residues in contact with ALA 478 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474H GLN 2.8 24.2 + - - +
475H TYR* 4.1 4.7 - - - +
477H VAL* 1.3 75.0 - - - +
479H THR* 1.3 59.0 + - - +
481H LEU* 3.4 9.6 + - - +
482H SER* 2.9 26.0 + - - -
542H ILE* 5.4 1.3 - - - -
598H ARG* 5.2 16.2 + - - +
----------------------------------------------------------
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Residues in contact with THR 479 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
475H TYR* 2.9 21.1 + - - -
476H PHE* 3.2 12.8 + - - -
478H ALA* 1.3 75.8 - - - +
480H LYS* 1.3 59.0 + - - +
482H SER* 3.1 10.0 + - - -
483H GLN* 2.9 27.4 + - - +
598H ARG* 6.2 0.7 - - - +
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Residues in contact with LYS 480 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
476H PHE* 2.9 18.1 + - + +
477H VAL* 3.2 13.0 + - - +
479H THR* 1.3 76.9 - - - +
481H LEU* 1.3 55.7 + - - +
483H GLN* 3.5 7.0 + - - +
484H ALA* 2.9 27.1 + - - +
538H VAL* 6.6 0.2 - - - -
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Residues in contact with LEU 481 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477H VAL 2.9 13.1 + - - +
478H ALA* 3.6 12.1 - - - +
479H THR 3.3 0.4 - - - -
480H LYS* 1.3 76.1 - - - +
482H SER* 1.3 58.3 + - - +
484H ALA* 3.4 10.0 + - - +
485H GLN* 2.9 25.6 + - - +
538H VAL 5.8 1.1 - - - -
539H TYR* 4.5 24.5 - - + +
542H ILE* 4.5 9.1 - - + +
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Residues in contact with SER 482 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
478H ALA 2.9 14.2 + - - -
479H THR* 3.1 13.4 + - - -
481H LEU* 1.3 75.9 - - - +
483H GLN* 1.3 59.4 + - - +
485H GLN* 3.1 9.8 + - - +
486H ARG* 2.9 24.8 + - - +
598H ARG* 5.3 11.4 - - - -
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Residues in contact with GLN 483 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
479H THR 2.9 14.7 + - - +
480H LYS* 3.8 7.2 - - - +
482H SER* 1.3 75.0 - - - +
484H ALA* 1.3 58.6 + - - +
486H ARG* 3.1 9.1 + - + +
487H THR* 2.9 30.3 + - - -
----------------------------------------------------------
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Residues in contact with ALA 484 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
480H LYS 2.9 17.7 + - - +
481H LEU* 3.4 11.9 - - - +
483H GLN* 1.3 77.8 - - - +
485H GLN* 1.3 50.0 + - - +
487H THR* 4.7 2.5 - - - +
488H THR* 2.7 40.5 + - - +
535H ALA* 4.0 29.3 - - + +
538H VAL* 5.1 5.8 - - + -
539H TYR* 4.8 7.2 - - + +
----------------------------------------------------------
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Residues in contact with GLN 485 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481H LEU 2.9 14.2 + - - +
482H SER* 3.1 12.5 + - - +
484H ALA* 1.3 73.7 - - - +
486H ARG* 1.3 52.7 + - - +
488H THR* 4.3 3.8 - - - -
489H LEU* 2.7 37.9 + - - +
1134H GLN* 5.9 5.8 - - - +
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Residues in contact with ARG 486 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
482H SER 2.9 11.7 + - - +
483H GLN* 3.1 13.2 + - - +
485H GLN* 1.3 75.5 - - - +
487H THR* 1.3 60.0 + - - +
489H LEU* 3.2 6.5 + - - +
490H GLU* 2.9 26.7 + - - +
----------------------------------------------------------
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Residues in contact with THR 487 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
483H GLN 2.9 14.1 + - - -
484H ALA* 4.6 2.9 - - - -
486H ARG* 1.3 72.8 - - - +
488H THR* 1.3 61.0 - - - +
490H GLU* 3.1 8.3 + - - +
491H HIS* 2.9 28.6 + - - +
535H ALA* 5.7 3.6 - - - -
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Residues in contact with THR 488 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484H ALA 2.7 23.6 + - - -
485H GLN* 4.3 3.4 - - - -
487H THR* 1.3 77.7 - - - +
489H LEU* 1.3 56.3 + - - +
491H HIS* 3.9 2.0 - - - +
492H SER* 2.9 30.0 + - - -
531H THR 6.0 0.2 - - - -
532H SER* 4.1 24.0 - - - +
535H ALA* 4.0 19.2 - - - +
1134H GLN* 5.6 5.6 - - - -
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Residues in contact with LEU 489 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
485H GLN 2.7 25.6 + - - +
486H ARG* 3.5 6.7 - - - +
487H THR 3.2 0.2 - - - -
488H THR* 1.3 76.4 - - - +
490H GLU* 1.3 59.0 + - - +
492H SER* 3.8 5.4 - - - -
493H ASN* 2.9 27.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 490 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
486H ARG 2.9 13.7 + - - +
487H THR* 3.1 11.8 + - - +
489H LEU* 1.3 75.0 - - - +
491H HIS* 1.3 60.0 + - - +
493H ASN* 3.1 9.1 + - - +
494H GLU* 2.9 24.6 + - - +
----------------------------------------------------------
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Residues in contact with HIS 491 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
487H THR 2.9 15.6 + - - +
488H THR 4.1 3.4 - - - +
490H GLU* 1.3 76.2 - - - +
492H SER* 1.3 57.3 + - - +
494H GLU* 3.2 9.5 + - - +
495H ARG* 2.9 22.5 + - - +
528H LYS* 3.5 41.8 - - + +
531H THR* 4.9 6.1 - - - -
532H SER* 4.3 8.7 - - - +
----------------------------------------------------------
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Residues in contact with SER 492 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488H THR 2.9 20.7 + - - -
489H LEU* 3.9 7.0 - - - -
491H HIS* 1.3 74.0 - - - +
493H ASN* 1.3 60.3 + - - +
495H ARG* 3.2 11.7 + - - +
496H LEU* 2.9 24.8 + - - +
532H SER* 5.2 4.1 - - - -
1130H ASN* 5.5 11.0 - - - -
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Residues in contact with ASN 493 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
489H LEU 2.9 19.6 + - - +
490H GLU* 3.1 9.8 + - - +
492H SER* 1.3 75.0 - - - +
494H GLU* 1.3 59.7 + - - +
496H LEU* 3.2 9.5 + - - +
497H LYS* 2.9 26.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 494 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
490H GLU 2.9 12.8 + - - +
491H HIS* 3.2 12.3 + - - +
493H ASN* 1.3 74.4 - - - +
495H ARG* 1.3 58.4 + - - +
497H LYS* 3.7 8.7 - - - +
498H GLN* 2.9 29.8 + - - +
528H LYS* 4.4 11.0 - - + -
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Residues in contact with ARG 495 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491H HIS 2.9 12.9 + - - +
492H SER* 3.2 14.8 + - - +
494H GLU* 1.3 74.8 - - - +
496H LEU* 1.3 59.4 + - - +
498H GLN* 3.7 6.0 - - - +
499H THR* 2.9 27.6 + - - -
525H THR* 5.7 12.8 - - - +
528H LYS* 4.9 5.1 - - + +
529H GLU* 6.0 3.8 - - + +
1098H HIS* 5.9 5.8 - - + -
1126H SER* 5.8 1.1 - - - -
----------------------------------------------------------
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Residues in contact with LEU 496 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
492H SER 2.9 12.8 + - - +
493H ASN* 3.2 12.1 + - - +
495H ARG* 1.3 76.0 - - - +
497H LYS* 1.3 59.9 + - - +
499H THR* 3.4 7.5 - - - -
500H ASN* 2.9 30.3 + - - +
1126H SER* 5.2 8.7 - - - +
----------------------------------------------------------
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Residues in contact with LYS 497 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
493H ASN 2.9 15.4 + - - +
494H GLU* 3.3 9.6 + - - +
496H LEU* 1.3 77.5 - - - +
498H GLN* 1.3 56.8 + - - +
500H ASN* 3.7 4.2 + - - +
501H GLU* 2.9 27.3 + - - +
----------------------------------------------------------
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Residues in contact with GLN 498 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
494H GLU 2.9 17.9 + - - +
495H ARG* 4.1 5.8 - - - +
497H LYS* 1.3 75.5 - - - +
499H THR* 1.3 57.3 + - - +
501H GLU* 3.6 10.5 - - + +
502H MET* 2.9 25.6 + - - +
521H ARG* 4.8 23.7 - - + +
524H VAL* 5.6 6.5 - - + -
525H THR* 5.4 9.0 - - - +
----------------------------------------------------------
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Residues in contact with THR 499 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495H ARG 2.9 20.0 + - - -
496H LEU* 3.1 11.6 + - - -
498H GLN* 1.3 75.8 - - - +
500H ASN* 1.3 60.7 + - - +
501H GLU 3.2 0.2 - - - -
502H MET* 3.1 9.8 + - - +
503H LEU* 2.9 23.0 + - - +
1122H LEU* 4.0 25.1 - - - +
1125H PHE* 6.0 4.5 - - - -
1126H SER* 5.2 11.2 - - - -
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Residues in contact with ASN 500 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
496H LEU 2.9 15.7 + - - +
497H LYS* 4.3 4.3 - - - +
499H THR* 1.3 72.9 - - - +
501H GLU* 1.3 59.6 + - - +
503H LEU* 3.2 13.3 + - + +
504H ARG* 2.9 24.9 + - - +
1122H LEU* 5.8 1.3 - - - -
----------------------------------------------------------
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Residues in contact with GLU 501 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
497H LYS 2.9 21.2 + - - +
498H GLN* 3.6 11.9 - - + +
500H ASN* 1.3 77.5 - - - +
502H MET* 1.3 56.2 + - - +
504H ARG* 3.3 11.5 + - + +
505H GLY* 2.9 20.3 + - - -
517H ILE* 5.7 1.9 - - - +
1432H PHE* 6.2 1.8 - - - -
1433H SER* 5.3 16.6 - - - +
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Residues in contact with MET 502 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
498H GLN 2.9 15.8 + - - +
499H THR* 3.1 12.0 + - - +
501H GLU* 1.3 73.7 - - - +
503H LEU* 1.3 60.8 + - - +
504H ARG 3.2 0.4 - - - -
505H GLY* 3.1 5.1 + - - +
506H MET* 2.9 24.9 + - - +
517H ILE* 5.7 6.5 - - + -
521H ARG* 5.3 9.9 - - + -
1122H LEU* 5.8 2.7 - - + -
----------------------------------------------------------
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Residues in contact with LEU 503 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
499H THR 2.9 10.3 + - - +
500H ASN* 3.2 17.2 + - + +
502H MET* 1.3 76.4 - - - +
504H ARG* 1.3 57.6 + - - +
506H MET* 3.2 10.2 + - - +
507H LYS* 2.9 24.4 + - - +
1118H LEU* 5.5 5.8 - - + -
1122H LEU* 4.6 19.7 - - + +
----------------------------------------------------------
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Residues in contact with ARG 504 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
500H ASN 2.9 14.5 + - - +
501H GLU* 3.3 14.8 - - - +
502H MET 3.2 0.2 - - - -
503H LEU* 1.3 75.8 - - - +
505H GLY* 1.3 56.6 + - - +
507H LYS* 3.1 11.9 + - + +
508H LEU* 2.9 26.2 + - - +
1430H VAL* 4.1 9.9 - - + +
1431H LEU 5.2 9.6 - - - +
1478H GLY* 6.6 0.2 - - - -
----------------------------------------------------------
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Residues in contact with GLY 505 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
501H GLU 2.9 13.6 + - - -
502H MET* 3.1 7.5 + - - -
504H ARG* 1.3 74.5 - - - +
506H MET* 1.3 59.5 + - - +
508H LEU* 3.1 22.4 + - - +
509H LEU 3.9 2.4 - - - +
513H ALA* 3.5 24.8 - - - +
517H ILE* 5.0 8.5 - - - -
----------------------------------------------------------
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Residues in contact with MET 506 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
502H MET 2.9 12.0 + - - +
503H LEU* 3.2 12.3 + - - +
505H GLY* 1.3 75.1 - - - +
507H LYS* 1.3 61.4 + - - +
508H LEU 3.5 5.9 + - - +
1110H MET* 5.6 8.8 - - - +
1113H PHE* 5.7 10.1 - - + +
1114H GLU* 5.3 11.0 - - - +
----------------------------------------------------------
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Residues in contact with LYS 507 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
503H LEU 2.9 13.4 + - - +
504H ARG* 3.1 15.0 + - + +
506H MET* 1.3 75.3 - - - +
508H LEU* 1.3 60.6 + - - +
1430H VAL* 4.7 9.3 - - + +
----------------------------------------------------------
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Residues in contact with LEU 508 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
504H ARG 2.9 14.0 + - - +
505H GLY* 3.1 12.1 + - - +
506H MET 3.7 7.1 - - - +
507H LYS* 1.3 83.0 - - - +
509H LEU* 1.3 67.5 + - - +
513H ALA* 3.8 13.5 - - + +
1430H VAL* 4.0 22.9 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il