Contacts of the helix formed by residues 510 - 568 (chain D) in PDB entry 5TWV
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LYS 510 (chain D).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
509D LEU* 1.3 78.6 - - - +
511D LEU* 1.3 61.4 + - + +
512D TYR 3.5 0.2 - - - -
514D TRP* 2.8 34.1 + - - +
1110D MET* 5.1 15.3 - - + +
1393D PHE* 5.1 15.1 - - + -
1419D ARG* 5.5 6.1 - - + -
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Residues in contact with LEU 511 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
509D LEU* 4.7 0.8 - - - +
510D LYS* 1.3 77.9 - - - +
512D TYR* 1.3 59.9 + - - +
514D TRP* 3.7 3.4 - - - +
515D GLU* 3.0 32.2 + - - +
1393D PHE* 6.1 1.2 - - - -
1416D HIS* 5.2 1.6 - - - +
1419D ARG* 3.9 38.1 - - + +
1420D SER* 4.0 12.1 - - - +
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Residues in contact with TYR 512 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
509D LEU* 4.8 11.6 - - + +
510D LYS 3.5 1.4 - - - +
511D LEU* 1.3 80.1 - - - +
513D ALA* 1.3 58.3 + - - +
515D GLU* 4.2 1.2 - - - +
516D SER* 2.9 35.9 + - - -
1442D PRO* 3.7 36.4 - - + +
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Residues in contact with ALA 513 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
505D GLY* 3.5 26.0 - - - +
508D LEU* 3.8 16.6 - - + +
509D LEU 3.4 22.1 + - - +
510D LYS 3.9 1.2 + - - -
511D LEU 3.5 0.2 - - - -
512D TYR* 1.3 77.5 - - - +
514D TRP* 1.3 60.4 + - - +
516D SER* 5.1 0.4 - - - -
517D ILE* 2.6 37.3 + - + +
518D PHE 3.5 0.7 + - - -
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Residues in contact with TRP 514 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
510D LYS 2.8 23.1 + - - +
511D LEU* 3.7 5.8 - - - +
512D TYR 3.3 0.2 - - - -
513D ALA* 1.3 78.2 - - - +
515D GLU* 1.3 54.7 + - - +
518D PHE* 2.6 38.4 + - - +
1106D ILE 5.5 7.4 - - - +
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Residues in contact with GLU 515 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
511D LEU 3.0 17.6 + - - +
512D TYR* 4.2 2.2 - - - +
514D TRP* 1.3 76.8 - - - +
516D SER* 1.3 59.1 + - - +
518D PHE* 4.2 0.8 - - - +
519D CYS* 2.9 34.3 + - - +
1442D PRO 5.5 6.1 - - - +
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Residues in contact with SER 516 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
512D TYR 2.9 19.0 + - - -
513D ALA* 5.1 0.7 - - - -
515D GLU* 1.3 75.6 - - - +
517D ILE* 1.3 53.4 + - - +
519D CYS* 4.8 1.8 - - - -
520D SER* 2.7 40.2 + - - +
1441D ASP 4.3 17.7 - - - -
1442D PRO* 4.8 7.4 - - - -
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Residues in contact with ILE 517 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
501D GLU 5.7 3.1 - - - +
502D MET* 5.7 5.2 - - + -
505D GLY* 5.0 9.6 - - - -
513D ALA* 2.6 31.6 + - + +
516D SER* 1.3 76.4 - - - +
518D PHE* 1.3 59.4 + - - +
520D SER* 4.6 1.1 - - - -
521D ARG* 2.6 40.2 + - + +
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Residues in contact with PHE 518 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
513D ALA 3.5 0.6 + - - -
514D TRP* 2.6 26.1 + - - +
515D GLU* 4.2 0.9 - - - +
517D ILE* 1.3 77.8 - - - +
519D CYS* 1.3 53.1 + - - +
521D ARG* 4.9 0.2 - - - -
522D VAL* 2.7 39.2 + - - +
1106D ILE* 4.9 17.9 - - + -
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Residues in contact with CYS 519 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
515D GLU 2.9 20.0 + - - +
516D SER* 4.5 2.0 - - - +
518D PHE* 1.3 76.6 - - - +
520D SER* 1.3 60.2 + - - +
522D VAL* 4.2 1.2 - - - +
523D GLU* 2.9 32.6 + - - +
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Residues in contact with SER 520 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
516D SER* 2.7 22.8 + - - -
517D ILE* 4.6 1.6 - - - -
519D CYS* 1.3 76.3 - - - +
521D ARG* 1.3 61.1 + - - +
523D GLU* 4.0 2.8 - - - +
524D VAL* 2.9 32.9 + - - +
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Residues in contact with ARG 521 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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498D GLN* 4.8 21.8 - - + +
502D MET* 5.3 8.3 - - + -
517D ILE* 2.6 26.6 + - + +
520D SER* 1.3 75.5 - - - +
522D VAL* 1.3 54.1 + - - +
524D VAL* 5.0 1.8 - - - -
525D THR* 2.6 41.4 + - - +
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Residues in contact with VAL 522 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
518D PHE* 2.7 24.4 + - - +
519D CYS* 4.2 1.8 - - - +
521D ARG* 1.3 76.0 - - - +
523D GLU* 1.3 58.4 + - - +
525D THR* 4.2 3.3 - - - -
526D ARG* 2.9 30.0 + - - +
1098D HIS* 5.9 0.8 - - - -
1102D LEU* 6.2 4.5 - - + -
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Residues in contact with GLU 523 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
519D CYS 2.9 21.7 + - - +
520D SER* 4.0 3.4 - - - +
522D VAL* 1.3 75.9 - - - +
524D VAL* 1.3 60.2 + - - +
526D ARG* 3.4 5.1 + - - +
527D ARG* 2.9 25.6 + - - +
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Residues in contact with VAL 524 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
498D GLN* 5.6 7.6 - - + -
520D SER 2.9 17.9 + - - +
521D ARG* 4.7 1.8 - - - +
523D GLU* 1.3 73.9 - - - +
525D THR* 1.3 61.1 + - - +
527D ARG* 3.1 8.8 + - + +
528D LYS* 2.9 31.2 + - - +
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Residues in contact with THR 525 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495D ARG* 5.7 11.0 - - - +
498D GLN* 5.4 9.7 - - - +
521D ARG* 2.6 24.1 + - - -
522D VAL* 4.2 3.1 - - - -
524D VAL* 1.3 77.8 - - - +
526D ARG* 1.3 50.5 + - - +
528D LYS* 5.1 2.0 - - - -
529D GLU* 2.6 40.5 + - - +
1098D HIS* 3.4 28.3 + - - -
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Residues in contact with ARG 526 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
522D VAL 2.9 21.4 + - - +
523D GLU* 3.6 6.5 - - - +
525D THR* 1.3 74.6 - - - +
527D ARG* 1.3 52.5 + - - +
529D GLU* 4.2 4.5 - - - -
530D MET* 2.7 36.5 + - - +
1098D HIS* 5.0 3.3 + - + -
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Residues in contact with ARG 527 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
523D GLU 2.9 14.6 + - - +
524D VAL* 3.1 13.6 + - - +
526D ARG* 1.3 75.2 - - - +
528D LYS* 1.3 61.4 + - - +
530D MET* 3.0 6.2 + - - +
531D THR* 2.9 27.4 + - - -
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Residues in contact with LYS 528 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491D HIS* 3.5 39.1 - - + +
494D GLU* 4.4 11.4 - - + -
495D ARG* 4.9 5.2 - - + +
524D VAL 2.9 16.9 + - - +
525D THR* 4.8 2.0 - - - +
527D ARG* 1.3 73.7 - - - +
529D GLU* 1.3 57.4 + - - +
531D THR* 4.4 3.4 - - - +
532D SER* 2.9 29.8 + - - -
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Residues in contact with GLU 529 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495D ARG* 6.0 1.0 - - - +
525D THR 2.6 24.9 + - - +
526D ARG* 3.8 4.5 - - - -
528D LYS* 1.3 75.1 - - - +
530D MET* 1.3 57.8 + - - +
532D SER* 3.8 6.2 - - - -
533D LEU* 2.8 27.6 + - - +
1094D ALA* 5.3 8.7 - - + +
1098D HIS* 4.8 16.2 - - + +
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Residues in contact with MET 530 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526D ARG 2.7 22.7 + - - +
527D ARG* 3.0 7.5 + - - +
529D GLU* 1.3 76.1 - - - +
531D THR* 1.3 59.7 + - - +
532D SER 3.3 0.2 - - - -
533D LEU* 3.4 7.6 - - - +
534D ARG* 2.9 27.9 + - - +
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Residues in contact with THR 531 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491D HIS* 4.9 7.0 - - - -
527D ARG 2.9 14.7 + - - -
528D LYS* 3.9 7.2 - - - -
530D MET* 1.3 76.3 - - - +
532D SER* 1.3 58.2 + - - +
534D ARG* 3.5 6.0 + - - +
535D ALA* 2.9 26.7 + - - +
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Residues in contact with SER 532 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488D THR* 4.1 28.2 - - - +
491D HIS* 4.3 7.3 - - - +
492D SER* 5.2 3.6 - - - -
528D LYS 2.9 18.8 + - - -
529D GLU* 3.8 6.1 - - - -
531D THR* 1.3 73.8 - - - +
533D LEU* 1.3 59.1 + - - +
535D ALA* 3.8 8.8 - - - +
536D PHE* 2.9 27.6 + - - +
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Residues in contact with LEU 533 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
529D GLU 2.8 22.9 + - - +
530D MET* 3.1 10.9 + - - +
532D SER* 1.3 77.2 - - - +
534D ARG* 1.3 60.3 + - - +
536D PHE* 3.3 7.9 + - - +
537D ALA* 2.9 24.9 + - - +
1090D GLY 5.9 1.2 - - - -
1091D LEU* 5.3 15.1 + - + +
1094D ALA* 5.1 13.9 - - + -
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Residues in contact with ARG 534 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
530D MET 2.9 15.5 + - - +
531D THR* 3.9 5.8 - - - +
533D LEU* 1.3 72.4 - - - +
535D ALA* 1.3 61.1 + - - +
537D ALA* 3.1 10.3 + - - +
538D VAL* 2.9 25.5 + - - +
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Residues in contact with ALA 535 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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484D ALA* 4.0 19.0 - - + +
487D THR* 5.7 2.0 - - - -
488D THR* 4.0 20.9 - - - +
531D THR 2.9 18.5 + - - +
532D SER* 3.9 10.3 - - - +
534D ARG* 1.3 75.5 - - - +
536D PHE* 1.3 57.0 + - - +
538D VAL* 3.3 8.5 + - - +
539D TYR* 2.9 27.4 + - - +
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Residues in contact with PHE 536 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488D THR* 5.6 0.2 - - - -
532D SER 2.9 20.7 + - - +
533D LEU* 3.4 9.6 - - - +
534D ARG 3.2 0.2 - - - -
535D ALA* 1.3 75.4 - - - +
537D ALA* 1.3 59.4 + - - +
539D TYR* 3.8 5.9 - - - +
540D THR* 2.9 30.7 + - - -
1090D GLY* 5.8 10.8 - - - +
1133D ASP 5.6 5.6 - - - +
1134D GLN* 5.5 8.5 - - - +
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Residues in contact with ALA 537 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
533D LEU 2.9 14.5 + - - +
534D ARG* 3.1 12.1 + - - +
536D PHE* 1.3 76.5 - - - +
538D VAL* 1.3 59.9 + - - +
540D THR* 3.8 4.3 - - - -
541D SER* 2.9 28.5 + - - -
1087D GLU 5.0 8.6 - - - +
1088D TRP* 6.2 3.1 - - + -
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Residues in contact with VAL 538 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481D LEU* 5.5 1.1 - - - +
484D ALA* 5.1 7.6 - - + -
534D ARG 2.9 12.9 + - - +
535D ALA* 3.3 11.0 + - - +
537D ALA* 1.3 77.8 - - - +
539D TYR* 1.3 57.3 + - - +
541D SER* 3.2 7.5 + - - -
542D ILE* 2.9 26.7 + - - +
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Residues in contact with TYR 539 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481D LEU* 4.5 24.5 - - + +
484D ALA* 4.8 7.3 - - + +
535D ALA 2.9 17.2 + - - +
536D PHE* 3.5 6.9 + - - +
537D ALA 3.4 0.2 - - - -
538D VAL* 1.3 77.5 - - - +
540D THR* 1.3 56.9 + - - +
542D ILE* 3.2 4.6 + - - +
543D SER* 2.9 25.9 + - - -
1134D GLN* 4.9 14.8 - - - +
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Residues in contact with THR 540 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
536D PHE 2.9 19.4 + - - -
537D ALA 4.2 1.6 - - - -
539D TYR* 1.3 74.8 - - - +
541D SER* 1.3 58.1 + - - +
542D ILE 3.4 0.2 - - - -
543D SER* 3.6 10.3 - - - -
544D ILE* 2.9 26.7 + - - +
1086D VAL 4.0 12.9 - - - +
1087D GLU* 4.0 22.7 - - - -
1137D PRO* 6.4 1.1 - - - -
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Residues in contact with SER 541 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
537D ALA 2.9 20.6 + - - -
538D VAL* 3.4 10.1 - - - -
539D TYR 3.2 0.4 - - - -
540D THR* 1.3 76.1 - - - +
542D ILE* 1.3 58.9 + - - +
544D ILE* 3.3 8.8 + - - +
545D PHE* 2.8 24.4 + - - +
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Residues in contact with ILE 542 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477D VAL* 3.9 33.3 - - + +
478D ALA* 5.4 0.9 - - - -
480D LYS* 6.2 0.2 - - + -
481D LEU* 4.5 10.1 - - + -
538D VAL 2.9 13.5 + - - +
539D TYR 3.2 7.4 + - - +
541D SER* 1.3 72.6 - - - +
543D SER* 1.3 61.1 + - - +
545D PHE* 2.9 11.8 - - - +
546D MET* 2.8 25.8 + - - +
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Residues in contact with SER 543 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
539D TYR 2.9 14.2 + - - -
540D THR* 3.6 13.0 - - - -
541D SER 3.3 0.2 - - - -
542D ILE* 1.3 77.5 - - - +
544D ILE* 1.3 55.2 + - - +
546D MET* 3.1 10.6 + - - +
547D ASN* 2.8 25.2 + - - +
1138D SER* 6.2 4.9 - - - -
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Residues in contact with ILE 544 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
540D THR 2.9 17.4 + - - +
541D SER* 3.5 9.6 - - - +
542D ILE 3.2 0.2 - - - -
543D SER* 1.3 73.0 - - - +
545D PHE* 1.3 61.2 + - - +
546D MET 3.2 0.2 - - - -
547D ASN* 3.6 10.0 - - - +
548D THR* 2.9 28.2 + - - -
1079D CYS 4.7 3.2 - - - +
1083D SER* 3.8 23.6 - - - +
1087D GLU* 6.2 2.2 - - + -
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Residues in contact with PHE 545 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
473D VAL* 5.8 3.6 - - + +
477D VAL* 5.0 11.0 - - + -
541D SER 2.8 15.2 + - - +
542D ILE* 2.9 20.9 - - + +
544D ILE* 1.3 78.0 - - - +
546D MET* 1.3 55.7 + - - +
548D THR* 3.4 7.2 + - - -
549D ALA* 2.9 27.3 + - - +
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Residues in contact with MET 546 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
542D ILE 2.8 11.8 + - - +
543D SER* 3.2 13.7 - - - +
545D PHE* 1.3 74.8 - - - +
547D ASN* 1.3 63.8 + - - +
549D ALA* 3.2 21.4 + - - +
550D ILE* 3.3 8.1 + - - +
591D PHE* 4.8 17.5 - - + -
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Residues in contact with ASN 547 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
543D SER 2.8 14.8 + - - +
544D ILE* 3.7 12.1 - - - +
546D MET* 1.3 76.8 - - - +
548D THR* 1.3 51.2 + - - +
550D ILE* 3.5 5.9 + - - +
551D PRO* 2.7 31.9 - - - +
1079D CYS* 4.5 7.7 - - - +
1082D THR* 5.8 3.4 - - - -
1083D SER* 4.0 18.8 - - - +
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Residues in contact with THR 548 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544D ILE 2.9 19.3 + - - -
545D PHE* 3.5 8.7 - - - -
546D MET 3.2 0.2 - - - -
547D ASN* 1.3 73.7 - - - +
549D ALA* 1.3 61.7 + - - +
551D PRO* 2.9 19.9 - - - +
552D ILE* 3.1 9.8 + - - +
1079D CYS* 3.7 22.3 - - - +
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Residues in contact with ALA 549 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470D LEU* 5.3 11.1 - - + +
545D PHE 2.9 14.5 + - - +
546D MET* 3.2 13.2 + - - +
548D THR* 1.3 77.2 - - - +
550D ILE* 1.3 58.7 + - - +
552D ILE* 2.7 32.8 + - + +
553D ALA* 3.3 3.6 + - - +
591D PHE* 3.9 24.9 - - + -
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Residues in contact with ILE 550 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
546D MET 3.3 8.5 + - - +
547D ASN* 4.0 4.7 - - - +
549D ALA* 1.3 77.9 - - - +
551D PRO* 1.3 67.1 - - + +
553D ALA* 3.2 12.4 + - - +
554D ALA* 3.1 16.6 + - - +
591D PHE* 5.5 3.7 - - + -
----------------------------------------------------------
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Residues in contact with PRO 551 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
547D ASN 2.7 30.3 - - - +
548D THR 2.9 12.8 - - - +
550D ILE* 1.3 74.5 - - + +
552D ILE* 1.3 55.9 + - - +
553D ALA 3.2 0.2 - - - -
554D ALA* 3.4 14.9 - - + +
555D VAL* 2.7 32.6 + - - +
1075D GLY* 3.7 25.2 - - - +
1078D LEU* 5.1 4.3 - - + -
1079D CYS* 3.7 21.8 - - + +
----------------------------------------------------------
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Residues in contact with ILE 552 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466D VAL* 4.2 17.6 - - + +
470D LEU* 5.5 4.7 - - + -
548D THR 3.1 5.9 + - - +
549D ALA* 2.7 30.3 + - + +
551D PRO* 1.3 71.4 - - - +
553D ALA* 1.3 55.9 + - - +
555D VAL* 3.2 8.3 + - - +
556D LEU* 2.9 26.7 + - - +
----------------------------------------------------------
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Residues in contact with ALA 553 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466D VAL* 4.8 5.6 - - + +
549D ALA 3.3 3.0 + - - +
550D ILE* 3.2 13.2 + - - +
552D ILE* 1.3 78.6 - - - +
554D ALA* 1.3 59.6 + - - +
556D LEU* 3.2 9.5 + - - +
557D ILE* 2.9 28.1 + - - +
583D PHE* 5.6 13.6 - - + +
587D VAL* 6.5 0.4 - - + -
----------------------------------------------------------
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Residues in contact with ALA 554 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
550D ILE 3.1 6.6 + - - +
551D PRO* 3.5 22.0 - - + +
552D ILE 3.2 0.2 - - - -
553D ALA* 1.3 77.6 - - - +
555D VAL* 1.3 60.5 + - - +
557D ILE* 3.2 9.1 + - - +
558D THR* 3.1 22.7 + - - -
1075D GLY* 6.0 3.8 - - - -
----------------------------------------------------------
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Residues in contact with VAL 555 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
551D PRO 2.7 21.0 + - - +
552D ILE* 3.4 8.5 - - - +
554D ALA* 1.3 72.4 - - - +
556D LEU* 1.3 53.5 + - - +
558D THR* 3.3 6.9 + - - +
559D PHE* 2.7 37.6 + - + +
1072D CYS* 6.5 0.4 - - - -
----------------------------------------------------------
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Residues in contact with LEU 556 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462D ILE* 3.7 31.2 - - - +
463D GLY* 4.0 6.5 - - - -
466D VAL* 3.8 11.4 - - + -
552D ILE 2.9 14.0 + - - +
553D ALA* 3.4 9.6 - - - +
555D VAL* 1.3 77.4 - - - +
557D ILE* 1.3 49.7 + - - +
559D PHE* 4.3 5.8 - - - -
560D VAL* 2.4 43.8 + - - +
----------------------------------------------------------
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Residues in contact with ILE 557 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
553D ALA 2.9 12.9 + - - +
554D ALA* 3.2 13.2 + - - +
556D LEU* 1.3 75.8 - - - +
558D THR* 1.3 57.7 + - - +
560D VAL* 3.6 5.8 - - - +
561D GLY* 3.1 23.4 + - - -
580D LEU* 6.2 5.8 - - + -
583D PHE* 5.9 6.5 - - + -
----------------------------------------------------------
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Residues in contact with THR 558 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
554D ALA 3.1 11.9 + - - -
555D VAL* 3.7 8.5 - - - -
557D ILE* 1.3 76.4 - - - +
559D PHE* 1.3 60.0 + - - +
561D GLY* 4.1 0.2 - - - -
562D HIS* 2.9 32.2 + - - +
1068D PHE* 4.4 11.9 - - - -
1071D LEU* 5.0 12.8 - - - -
1072D CYS* 5.0 16.4 - - - -
----------------------------------------------------------
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Residues in contact with PHE 559 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458D VAL* 5.4 2.7 - - + -
462D ILE* 3.8 23.6 - - + -
555D VAL 2.7 22.3 + - - +
556D LEU* 3.9 2.9 - - - +
558D THR* 1.3 70.9 - - - +
560D VAL* 1.3 58.7 + - - +
562D HIS* 4.3 5.4 - - + -
563D VAL* 2.9 50.1 + - + +
----------------------------------------------------------
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Residues in contact with VAL 560 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458D VAL 4.8 1.1 - - - -
459D SER* 3.7 30.7 - - - +
462D ILE* 3.8 12.5 - - + +
463D GLY 5.3 0.7 - - - +
556D LEU 2.4 34.9 + - - +
557D ILE* 3.6 7.9 - - - +
559D PHE* 1.3 70.7 - - - +
561D GLY* 1.3 53.5 + - - +
564D SER* 2.6 41.2 + - - -
----------------------------------------------------------
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Residues in contact with GLY 561 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
557D ILE 3.1 15.3 + - - -
558D THR 4.1 0.4 - - - -
560D VAL* 1.3 77.2 - - - +
562D HIS* 1.3 50.6 + - - +
564D SER* 4.7 1.3 - - - -
565D PHE* 2.7 39.1 + - - +
1068D PHE* 4.0 11.7 - - - -
----------------------------------------------------------
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Residues in contact with HIS 562 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
558D THR 2.9 22.2 + - - +
559D PHE* 4.2 5.2 - - + +
561D GLY* 1.3 76.3 - - - +
563D VAL* 1.3 58.9 + - + +
565D PHE* 3.3 5.6 + - - +
566D PHE* 2.9 28.8 + - - +
1068D PHE* 3.6 34.2 - - + +
----------------------------------------------------------
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Residues in contact with VAL 563 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458D VAL* 4.5 8.9 - - + +
559D PHE* 2.9 51.0 + - + +
562D HIS* 1.3 71.5 - - - +
564D SER* 1.3 60.6 + - - +
566D PHE* 3.7 6.4 - - - +
567D LYS* 2.9 32.9 + - - +
----------------------------------------------------------
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Residues in contact with SER 564 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456D LEU* 4.8 10.5 - - - -
458D VAL* 3.8 26.1 - - - +
459D SER* 3.9 14.1 - - - -
560D VAL 2.6 22.6 + - - -
561D GLY* 4.6 1.3 - - - -
563D VAL* 1.3 77.3 - - - +
565D PHE* 1.3 60.4 + - - +
567D LYS* 4.8 2.0 - - - +
568D GLU* 3.9 19.2 + - - +
570D ASP* 5.4 0.7 - - - +
----------------------------------------------------------
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Residues in contact with PHE 565 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
561D GLY 2.7 24.6 + - - +
562D HIS* 3.5 5.8 - - - +
563D VAL 3.2 0.2 - - - -
564D SER* 1.3 78.6 - - - +
566D PHE* 1.3 62.3 + + + +
567D LYS 3.5 0.2 - - - -
568D GLU 3.2 20.3 - - - +
569D SER* 5.0 0.5 - - - -
570D ASP 3.4 30.3 - - - +
571D LEU* 3.6 23.3 - - + -
1037D TRP* 6.1 2.0 - + - -
1041D ALA* 5.5 4.0 - - + -
1061D GLN* 5.1 22.4 - - + -
1064D TYR* 5.5 2.2 - - + -
1068D PHE* 4.4 25.4 - + + -
----------------------------------------------------------
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Residues in contact with PHE 566 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
562D HIS 2.9 17.3 + - - +
563D VAL* 3.1 6.7 + - - +
565D PHE* 1.3 82.8 - + + +
567D LYS* 1.3 65.8 - - - +
568D GLU 3.4 5.8 - - - +
----------------------------------------------------------
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Residues in contact with LYS 567 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458D VAL* 5.3 7.0 - - + -
563D VAL 2.9 16.3 + - - +
564D SER* 4.8 4.3 - - - +
566D PHE* 1.3 81.8 - - - +
568D GLU* 1.3 59.9 + - + +
----------------------------------------------------------
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Residues in contact with GLU 568 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
564D SER 3.9 14.8 + - - +
565D PHE 3.2 15.4 + - - +
566D PHE 3.3 6.6 - - - +
567D LYS* 1.3 81.5 - - + +
569D SER* 1.3 62.5 + - - +
570D ASP* 3.5 19.5 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il