Contacts of the helix formed by residues 510 - 568 (chain F) in PDB entry 5TWV
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LYS 510 (chain F).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
509F LEU* 1.3 78.6 - - - +
511F LEU* 1.3 61.4 + - + +
512F TYR 3.5 0.2 - - - -
514F TRP* 2.8 34.1 + - - +
1110F MET* 5.1 15.3 - - + -
1393F PHE* 5.1 15.6 - - + -
1419F ARG* 5.5 5.8 - - + -
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Residues in contact with LEU 511 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
509F LEU* 4.7 0.6 - - - +
510F LYS* 1.3 76.9 - - - +
512F TYR* 1.3 62.1 + - - +
514F TRP* 3.7 4.2 - - - +
515F GLU* 3.0 31.7 + - - +
1393F PHE* 6.1 1.0 - - - -
1416F HIS* 5.2 1.6 - - - +
1419F ARG* 3.9 38.3 - - + +
1420F SER* 4.0 12.1 - - - +
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Residues in contact with TYR 512 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
509F LEU* 4.8 12.7 - - + +
510F LYS 4.6 1.0 - - - +
511F LEU* 1.3 78.8 - - - +
513F ALA* 1.3 57.7 + - - +
515F GLU* 4.1 1.5 - - - +
516F SER* 2.9 37.1 + - - -
1442F PRO* 3.7 36.1 - - + +
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Residues in contact with ALA 513 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
505F GLY* 3.5 26.5 - - - +
508F LEU* 3.8 16.2 - - + -
509F LEU 3.4 21.7 + - - +
510F LYS 3.9 1.0 + - - -
512F TYR* 1.3 77.1 - - - +
514F TRP* 1.3 61.0 + - - +
516F SER* 5.1 0.4 - - - -
517F ILE* 2.6 38.3 + - + +
518F PHE 3.5 0.3 + - - -
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Residues in contact with TRP 514 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
510F LYS 2.8 24.6 + - - +
511F LEU* 3.7 5.4 - - - +
512F TYR 3.3 0.2 - - - -
513F ALA* 1.3 77.4 - - - +
515F GLU* 1.3 55.8 + - - +
518F PHE* 2.6 38.8 + - - +
1106F ILE 5.5 7.0 - - - +
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Residues in contact with GLU 515 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
511F LEU 3.0 17.6 + - - +
512F TYR* 4.2 2.0 - - - +
514F TRP* 1.3 76.2 - - - +
516F SER* 1.3 59.5 + - - +
518F PHE* 4.2 0.6 - - - +
519F CYS* 2.9 34.7 + - - +
1442F PRO* 5.5 6.1 - - + +
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Residues in contact with SER 516 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
512F TYR 2.9 19.6 + - - -
513F ALA* 5.1 0.7 - - - -
515F GLU* 1.3 75.6 - - - +
517F ILE* 1.3 53.9 + - - +
519F CYS* 4.8 1.8 - - - -
520F SER* 2.7 40.2 + - - +
1441F ASP 4.3 17.7 - - - -
1442F PRO* 4.8 7.4 - - - -
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Residues in contact with ILE 517 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
501F GLU 5.7 2.9 - - - +
502F MET* 5.7 5.8 - - + -
505F GLY* 5.0 9.4 - - - -
513F ALA* 2.6 30.5 + - + +
516F SER* 1.3 77.5 - - - +
518F PHE* 1.3 60.6 + - - +
520F SER* 4.6 0.9 - - - -
521F ARG* 2.6 40.7 + - + +
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Residues in contact with PHE 518 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
513F ALA 3.5 0.8 + - - -
514F TRP* 2.6 26.1 + - - +
515F GLU* 4.2 0.9 - - - +
517F ILE* 1.3 78.4 - - - +
519F CYS* 1.3 52.8 + - - +
522F VAL* 2.7 39.8 + - - +
1106F ILE* 4.9 18.2 - - + -
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Residues in contact with CYS 519 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
515F GLU 2.9 20.0 + - - +
516F SER* 4.5 2.2 - - - +
518F PHE* 1.3 76.3 - - - +
520F SER* 1.3 58.5 + - - +
522F VAL* 4.2 0.8 - - - +
523F GLU* 2.9 32.6 + - - +
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Residues in contact with SER 520 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
516F SER* 2.7 23.8 + - - -
517F ILE* 4.6 1.1 - - - -
519F CYS* 1.3 75.3 - - - +
521F ARG* 1.3 60.8 + - - +
523F GLU* 4.0 2.9 - - - +
524F VAL* 2.9 34.1 + - - +
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Residues in contact with ARG 521 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
498F GLN* 4.8 21.9 - - + +
502F MET* 5.3 8.5 - - + +
517F ILE* 2.6 27.2 + - + +
518F PHE* 4.9 0.4 - - - -
520F SER* 1.3 76.1 - - - +
522F VAL* 1.3 52.9 + - - +
524F VAL* 5.0 2.0 - - - -
525F THR* 2.6 41.7 + - - +
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Residues in contact with VAL 522 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
518F PHE* 2.7 24.9 + - - +
519F CYS* 4.2 1.8 - - - +
521F ARG* 1.3 77.4 - - - +
523F GLU* 1.3 59.1 + - - +
525F THR* 4.2 2.6 - - - -
526F ARG* 2.9 30.3 + - - +
1098F HIS* 5.9 1.4 - - - -
1102F LEU* 6.2 4.3 - - + -
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Residues in contact with GLU 523 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
519F CYS 2.9 21.3 + - - +
520F SER* 4.0 3.4 - - - +
522F VAL* 1.3 75.9 - - - +
524F VAL* 1.3 60.2 + - - +
526F ARG* 3.4 5.6 + - - +
527F ARG* 2.9 26.2 + - - +
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Residues in contact with VAL 524 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
498F GLN* 5.6 7.4 - - + -
520F SER 2.9 17.3 + - - +
521F ARG* 4.7 2.2 - - - +
523F GLU* 1.3 75.5 - - - +
525F THR* 1.3 60.8 + - - +
527F ARG* 3.1 8.4 + - - +
528F LYS* 2.9 31.0 + - - +
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Residues in contact with THR 525 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495F ARG* 5.7 11.0 - - - +
498F GLN* 5.4 10.0 - - - +
521F ARG 2.6 24.0 + - - -
522F VAL* 4.2 3.6 - - - -
524F VAL* 1.3 78.7 - - - +
526F ARG* 1.3 50.7 + - - +
528F LYS* 4.7 2.5 - - - +
529F GLU* 2.6 40.5 + - - +
1098F HIS* 3.4 28.0 - - - -
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Residues in contact with ARG 526 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
522F VAL 2.9 22.3 + - - +
523F GLU* 3.7 6.5 - - - +
525F THR* 1.3 76.5 - - - +
527F ARG* 1.3 51.6 + - - +
529F GLU* 3.8 4.7 - - - -
530F MET* 2.7 36.7 + - - +
1098F HIS* 5.0 3.5 + - + -
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Residues in contact with ARG 527 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
523F GLU 2.9 14.4 + - - +
524F VAL* 3.1 13.9 + - + +
526F ARG* 1.3 75.0 - - - +
528F LYS* 1.3 61.2 + - - +
530F MET* 3.0 6.3 + - - +
531F THR* 2.9 27.2 + - - -
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Residues in contact with LYS 528 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491F HIS* 3.5 38.8 - - + +
494F GLU* 4.4 11.9 - - + -
495F ARG* 4.9 4.9 - - + +
524F VAL 2.9 17.1 + - - +
525F THR* 4.8 2.7 - - - +
527F ARG* 1.3 74.1 - - - +
529F GLU* 1.3 57.4 + - - +
531F THR* 3.5 3.7 + - - +
532F SER* 2.9 30.1 + - - -
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Residues in contact with GLU 529 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
495F ARG* 6.0 1.0 - - - +
525F THR 2.6 24.7 + - - +
526F ARG* 3.8 4.5 - - - -
528F LYS* 1.3 75.8 - - - +
530F MET* 1.3 58.0 + - - +
532F SER* 3.8 6.0 - - - -
533F LEU* 2.8 28.1 + - - +
1094F ALA* 5.3 7.7 - - + +
1098F HIS* 4.8 15.7 - - + +
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Residues in contact with MET 530 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
526F ARG 2.7 22.1 + - - +
527F ARG* 3.0 7.8 + - - +
529F GLU* 1.3 77.2 - - - +
531F THR* 1.3 61.1 + - - +
533F LEU* 3.1 7.2 + - - +
534F ARG* 2.9 28.4 + - - +
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Residues in contact with THR 531 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
491F HIS* 4.9 7.0 - - - -
527F ARG 2.9 14.2 + - - -
528F LYS* 3.9 6.7 - - - -
530F MET* 1.3 75.0 - - - +
532F SER* 1.3 56.3 - - - +
534F ARG* 3.5 5.8 + - - +
535F ALA* 2.9 26.2 + - - +
----------------------------------------------------------
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Residues in contact with SER 532 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488F THR* 4.1 28.8 - - - +
491F HIS* 4.3 6.2 - - - +
492F SER* 5.2 3.6 - - - -
528F LYS 2.9 19.2 + - - -
529F GLU* 3.8 6.3 - - - -
531F THR* 1.3 74.3 - - - +
533F LEU* 1.3 58.5 + - - +
534F ARG 3.5 0.2 - - - -
535F ALA* 3.8 9.2 - - - +
536F PHE* 2.9 27.2 + - - +
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Residues in contact with LEU 533 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
529F GLU 2.8 22.5 + - - +
530F MET* 3.1 11.3 + - - +
532F SER* 1.3 77.2 - - - +
534F ARG* 1.3 59.3 + - - +
536F PHE* 3.3 8.0 + - - +
537F ALA* 2.9 25.5 + - - +
1090F GLY 5.6 1.5 - - - +
1091F LEU* 5.3 14.3 + - + +
1094F ALA* 5.1 13.0 - - + -
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Residues in contact with ARG 534 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
530F MET 2.9 14.9 + - - +
531F THR* 3.9 6.3 - - - +
533F LEU* 1.3 73.0 - - - +
535F ALA* 1.3 61.9 + - - +
537F ALA* 3.1 9.5 + - - +
538F VAL* 2.9 27.2 + - - +
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Residues in contact with ALA 535 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484F ALA* 4.0 17.4 - - + +
487F THR* 5.9 2.7 - - - -
488F THR* 4.0 21.8 - - - +
531F THR 2.9 18.9 + - - +
532F SER* 3.9 10.5 - - - +
534F ARG* 1.3 75.9 - - - +
536F PHE* 1.3 58.3 + - - +
538F VAL* 3.3 8.3 + - - +
539F TYR* 2.9 28.1 + - - +
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Residues in contact with PHE 536 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
488F THR* 5.6 0.4 - - - -
532F SER 2.9 21.4 + - - +
533F LEU* 3.4 9.2 - - - +
534F ARG 3.2 0.2 - - - -
535F ALA* 1.3 75.5 - - - +
537F ALA* 1.3 58.1 + - - +
539F TYR* 3.8 7.1 - - - +
540F THR* 2.9 30.8 + - - -
1090F GLY* 5.8 10.5 - - - +
1133F ASP 5.6 5.8 - - - +
1134F GLN* 5.5 8.3 - - - +
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Residues in contact with ALA 537 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
533F LEU 2.9 14.5 + - - +
534F ARG* 3.1 13.2 + - - +
536F PHE* 1.3 76.3 - - - +
538F VAL* 1.3 59.9 + - - +
540F THR* 3.8 4.3 - - - +
541F SER* 2.9 27.9 + - - -
1087F GLU 5.0 8.7 - - - +
1088F TRP* 6.2 3.1 - - + -
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Residues in contact with VAL 538 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481F LEU* 5.8 1.3 - - - -
484F ALA* 5.1 8.1 - - + -
534F ARG 2.9 12.7 + - - +
535F ALA* 3.7 10.1 - - - +
537F ALA* 1.3 78.4 - - - +
539F TYR* 1.3 57.8 + - - +
541F SER* 3.2 7.5 + - - -
542F ILE* 2.9 27.0 + - - +
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Residues in contact with TYR 539 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481F LEU* 4.5 23.7 - - + +
484F ALA* 4.8 6.5 - - + +
535F ALA 2.9 16.6 + - - +
536F PHE* 3.9 7.2 - - - +
538F VAL* 1.3 77.3 - - - +
540F THR* 1.3 56.3 + - - +
542F ILE* 3.2 4.7 + - - +
543F SER* 2.9 25.6 + - - -
1134F GLN* 4.9 13.9 - - - +
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Residues in contact with THR 540 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
536F PHE 2.9 18.1 + - - -
537F ALA* 4.2 1.8 - - - -
539F TYR* 1.3 76.5 - - - +
541F SER* 1.3 57.9 + - - +
543F SER* 3.6 10.4 - - - -
544F ILE* 2.9 26.5 + - - +
1086F VAL 4.0 12.8 - - - +
1087F GLU* 4.0 23.9 - - - -
1137F PRO* 6.4 1.6 - - - -
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Residues in contact with SER 541 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
537F ALA 2.9 21.0 + - - -
538F VAL* 3.4 10.1 - - - -
539F TYR 3.2 0.4 - - - -
540F THR* 1.3 76.5 - - - +
542F ILE* 1.3 58.5 + - - +
544F ILE* 3.3 9.0 + - - +
545F PHE* 2.8 24.9 + - - +
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Residues in contact with ILE 542 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477F VAL* 3.9 32.9 - - + +
478F ALA* 5.4 0.9 - - - -
480F LYS* 6.2 0.2 - - + -
481F LEU* 4.5 10.1 - - + +
538F VAL 2.9 12.2 + - - +
539F TYR 3.2 7.8 + - - +
541F SER* 1.3 73.1 - - - +
543F SER* 1.3 61.2 + - - +
545F PHE* 2.9 11.6 - - - +
546F MET* 2.8 25.3 + - - +
----------------------------------------------------------
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Residues in contact with SER 543 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
539F TYR 2.9 13.8 + - - -
540F THR* 3.6 13.5 - - - -
542F ILE* 1.3 75.8 - - - +
544F ILE* 1.3 55.9 + - - +
546F MET* 3.1 10.9 + - - +
547F ASN* 2.8 25.0 + - - +
1138F SER* 6.2 5.2 - - - -
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Residues in contact with ILE 544 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
540F THR 2.9 18.2 + - - +
541F SER* 3.5 9.6 - - - +
543F SER* 1.3 72.6 - - - +
545F PHE* 1.3 60.2 + - - +
547F ASN* 3.6 10.0 - - - +
548F THR* 2.9 28.1 + - - -
1079F CYS 4.7 3.1 - - - +
1083F SER* 3.8 23.6 - - - +
1087F GLU* 6.2 2.5 - - + -
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Residues in contact with PHE 545 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
473F VAL* 5.8 4.0 - - + +
477F VAL* 5.0 11.2 - - + -
541F SER 2.8 13.7 + - - +
542F ILE* 2.9 21.1 - - + +
544F ILE* 1.3 78.2 - - - +
546F MET* 1.3 54.9 + - - +
548F THR* 3.4 7.2 + - - -
549F ALA* 2.9 26.7 + - - +
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Residues in contact with MET 546 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
542F ILE 2.8 12.0 + - - +
543F SER* 3.1 13.7 + - - +
545F PHE* 1.3 74.5 - - - +
547F ASN* 1.3 63.1 - - - +
549F ALA* 3.2 21.1 + - - +
550F ILE* 3.3 8.1 + - - +
591F PHE* 4.8 17.6 - - + -
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Residues in contact with ASN 547 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
543F SER 2.8 15.4 + - - +
544F ILE* 3.7 11.7 - - - +
546F MET* 1.3 76.0 - - - +
548F THR* 1.3 50.8 + - - +
550F ILE* 3.5 6.2 + - - +
551F PRO* 2.7 31.7 - - - +
1079F CYS* 4.5 6.4 - - - +
1082F THR* 5.8 3.8 - - - -
1083F SER* 4.0 18.6 - - - +
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Residues in contact with THR 548 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544F ILE 2.9 19.3 + - - -
545F PHE* 3.5 8.5 - - - -
547F ASN* 1.3 75.2 - - - +
549F ALA* 1.3 60.1 + - - +
551F PRO* 2.9 19.6 - - - +
552F ILE* 3.1 9.0 + - - +
1079F CYS* 3.7 22.4 + - - +
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Residues in contact with ALA 549 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470F LEU* 5.3 10.7 - - + +
545F PHE 2.9 15.0 + - - +
546F MET* 3.2 12.8 + - - +
548F THR* 1.3 76.9 - - - +
550F ILE* 1.3 58.6 + - - +
552F ILE* 2.7 33.5 + - + +
553F ALA* 3.3 4.2 + - - +
591F PHE* 3.9 24.9 - - + -
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Residues in contact with ILE 550 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
546F MET 3.3 8.1 + - - +
547F ASN* 4.0 5.2 - - - +
549F ALA* 1.3 77.7 - - - +
551F PRO* 1.3 67.5 - - + +
553F ALA* 3.2 12.4 + - - +
554F ALA* 3.1 16.5 + - - +
591F PHE* 5.5 3.7 - - + -
----------------------------------------------------------
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Residues in contact with PRO 551 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
547F ASN 2.7 30.3 - - - +
548F THR 2.9 12.6 - - - +
550F ILE* 1.3 75.3 - - + +
552F ILE* 1.3 56.1 + - - -
554F ALA* 3.4 15.4 - - + +
555F VAL* 2.7 32.4 + - - +
1075F GLY* 3.7 24.2 - - - +
1078F LEU* 5.1 4.0 - - + -
1079F CYS* 3.7 22.0 - - + +
----------------------------------------------------------
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Residues in contact with ILE 552 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466F VAL* 4.2 18.5 - - + +
470F LEU* 5.5 4.9 - - + -
548F THR 3.1 5.9 + - - +
549F ALA* 2.7 29.9 + - + +
551F PRO* 1.3 72.1 - - - +
553F ALA* 1.3 56.2 + - - +
555F VAL* 3.2 8.1 + - - +
556F LEU* 2.9 27.0 + - - +
----------------------------------------------------------
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Residues in contact with ALA 553 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466F VAL* 4.8 5.3 - - + +
549F ALA 3.3 2.8 + - - +
550F ILE* 3.2 13.4 + - - +
552F ILE* 1.3 76.8 - - - +
554F ALA* 1.3 58.2 + - - +
556F LEU* 3.2 9.4 + - - +
557F ILE* 2.9 27.4 + - - +
583F PHE* 5.6 14.2 - - + +
587F VAL* 6.5 0.4 - - + -
----------------------------------------------------------
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Residues in contact with ALA 554 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
550F ILE 3.1 7.8 + - - +
551F PRO* 3.5 22.7 - - + +
552F ILE 3.2 0.2 - - - -
553F ALA* 1.3 77.1 - - - +
555F VAL* 1.3 62.2 + - - +
557F ILE* 3.2 9.4 + - - +
558F THR* 3.1 22.2 + - - -
1075F GLY* 6.0 4.0 - - - -
----------------------------------------------------------
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Residues in contact with VAL 555 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
551F PRO 2.7 21.2 + - - +
552F ILE* 3.4 8.5 - - - +
554F ALA* 1.3 73.3 - - - +
556F LEU* 1.3 52.0 + - - +
558F THR* 3.3 6.1 + - - -
559F PHE* 2.7 37.9 + - - +
1072F CYS* 6.5 0.4 - - - -
----------------------------------------------------------
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Residues in contact with LEU 556 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462F ILE* 3.7 31.4 - - + +
463F GLY* 4.0 7.0 - - - -
466F VAL* 3.8 11.9 - - + -
552F ILE 2.9 13.4 + - - +
553F ALA* 3.2 11.0 + - - +
555F VAL* 1.3 77.8 - - - +
557F ILE* 1.3 50.0 + - - +
559F PHE* 4.3 6.3 - - - -
560F VAL* 2.4 44.3 + - - +
----------------------------------------------------------
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Residues in contact with ILE 557 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
553F ALA 2.9 13.4 + - - +
554F ALA* 3.2 12.3 + - - +
556F LEU* 1.3 76.0 - - - +
558F THR* 1.3 58.5 + - - +
560F VAL* 3.6 6.2 - - - +
561F GLY* 3.1 23.4 + - - -
580F LEU* 6.2 5.4 - - + -
583F PHE* 5.9 6.5 - - + -
----------------------------------------------------------
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Residues in contact with THR 558 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
554F ALA 3.1 13.4 + - - -
555F VAL* 3.7 8.5 - - - -
557F ILE* 1.3 74.5 - - - +
559F PHE* 1.3 60.1 + - - +
561F GLY* 3.9 0.6 - - - -
562F HIS* 2.9 31.6 + - - +
1068F PHE* 4.4 11.3 - - - -
1071F LEU* 5.0 11.7 - - - -
1072F CYS* 5.0 17.0 - - - -
----------------------------------------------------------
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Residues in contact with PHE 559 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458F VAL* 5.4 2.5 - - + -
462F ILE* 3.8 24.5 - - + -
555F VAL* 2.7 23.2 + - + +
556F LEU* 3.9 2.9 - - - +
558F THR* 1.3 72.0 - - - +
560F VAL* 1.3 59.6 + - - +
562F HIS* 4.3 5.2 - - + -
563F VAL* 2.9 50.9 + - + +
----------------------------------------------------------
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Residues in contact with VAL 560 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458F VAL 4.8 1.1 - - - -
459F SER* 3.7 31.4 - - - +
462F ILE* 3.8 11.8 - - + +
463F GLY 5.3 0.2 - - - +
556F LEU 2.4 34.8 + - - +
557F ILE* 3.6 8.3 - - - +
559F PHE* 1.3 71.2 - - - +
561F GLY* 1.3 52.0 + - - +
564F SER* 2.6 40.8 + - - -
----------------------------------------------------------
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Residues in contact with GLY 561 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
557F ILE 3.1 16.0 + - - -
558F THR 4.1 0.4 - - - -
560F VAL* 1.3 76.6 - - - +
562F HIS* 1.3 51.1 + - - +
564F SER* 4.7 1.3 - - - -
565F PHE* 2.7 38.3 + - - +
1068F PHE* 4.0 10.9 - - - -
----------------------------------------------------------
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Residues in contact with HIS 562 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
558F THR 2.9 21.6 + - - +
559F PHE* 4.2 5.2 - - + +
561F GLY* 1.3 77.8 - - - +
563F VAL* 1.3 58.6 + - - +
565F PHE* 3.3 5.4 + - - +
566F PHE* 2.9 28.0 + - - +
1068F PHE* 3.6 34.0 - - + +
----------------------------------------------------------
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Residues in contact with VAL 563 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458F VAL* 4.5 8.5 - - + +
559F PHE* 2.9 50.9 + - + +
562F HIS* 1.3 72.1 - - - +
564F SER* 1.3 59.6 + - - +
566F PHE* 3.1 6.2 + - - +
567F LYS* 2.9 32.6 + - - +
----------------------------------------------------------
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Residues in contact with SER 564 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456F LEU* 4.8 10.5 - - - -
458F VAL* 3.8 25.6 - - - +
459F SER* 3.9 14.6 - - - -
560F VAL 2.6 24.1 + - - -
561F GLY* 4.6 1.6 - - - -
563F VAL* 1.3 76.7 - - - +
565F PHE* 1.3 59.1 + - - +
567F LYS* 4.3 2.0 - - - +
568F GLU* 3.9 19.9 + - - +
570F ASP* 5.4 0.7 - - - +
----------------------------------------------------------
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Residues in contact with PHE 565 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
561F GLY 2.7 25.5 + - - +
562F HIS* 3.5 5.4 - - - +
564F SER* 1.3 78.7 - - - +
566F PHE* 1.3 63.3 + + + +
568F GLU* 3.2 20.8 - - - +
569F SER* 5.0 0.5 - - - -
570F ASP 3.4 30.0 - - - +
571F LEU* 3.6 22.7 - - + -
1037F TRP* 6.0 2.0 - + - -
1041F ALA* 5.5 4.3 - - + -
1061F GLN* 5.1 22.7 - - + -
1064F TYR* 5.5 2.7 - - + -
1068F PHE* 4.4 23.8 - + + -
----------------------------------------------------------
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Residues in contact with PHE 566 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
562F HIS 2.9 16.4 + - - +
563F VAL* 3.1 6.7 + - - +
565F PHE* 1.3 81.9 - + + +
567F LYS* 1.3 66.9 + - - +
568F GLU 3.4 5.9 - - - +
----------------------------------------------------------
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Residues in contact with LYS 567 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458F VAL* 5.3 7.6 - - + -
563F VAL 2.9 16.1 + - - +
564F SER* 4.8 3.8 - - - +
566F PHE* 1.3 81.3 - - - +
568F GLU* 1.3 60.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 568 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
564F SER 3.9 15.5 + - - +
565F PHE 3.2 15.7 + - - +
566F PHE 3.3 6.6 - - - +
567F LYS* 1.3 83.3 - - + +
569F SER* 1.3 63.9 + - - +
570F ASP* 3.5 18.4 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il