Contacts of the helix formed by residues 573 - 614 (chain B) in PDB entry 5TWV
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 573 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
324B VAL* 4.8 23.1 - - + +
572B SER* 1.3 84.5 - - - +
574B SER* 1.3 62.7 + - - +
575B VAL 3.7 0.4 - - - -
576B ALA* 4.4 7.0 - - + -
577B PHE* 3.2 37.5 + - + +
1038B THR* 4.5 11.9 - - - +
1042B LEU* 4.1 30.7 - - + -
1278B ALA 5.0 5.6 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 574 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321B PHE* 3.0 42.4 - - - -
324B VAL* 5.7 1.8 - - - -
572B SER* 3.1 14.4 - - - -
573B PRO* 1.3 80.9 - - - +
575B VAL* 1.3 63.3 + - - +
576B ALA 3.2 0.7 + - - -
577B PHE* 4.3 0.5 - - - +
578B ALA* 2.9 34.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 575 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
455B ILE* 4.9 14.6 - - + -
456B LEU* 6.2 2.9 - - + -
459B SER* 6.1 4.0 - - - -
572B SER* 4.6 3.6 + - - +
574B SER* 1.3 77.1 - - - +
576B ALA* 1.3 60.6 + - - +
578B ALA* 4.7 0.9 - - - -
579B SER* 2.6 45.3 + - - +
580B LEU 3.5 0.7 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 576 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
572B SER 5.2 1.9 + - - +
573B PRO* 4.2 9.5 + - + +
574B SER 3.2 0.8 - - - -
575B VAL* 1.3 77.4 - - - +
577B PHE* 1.3 63.5 + - + +
580B LEU* 2.8 32.9 + - - +
1034B LEU* 5.4 2.9 - - + +
1038B THR* 4.5 21.5 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 577 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320B ILE* 6.4 2.2 - - + -
324B VAL* 6.1 3.1 - - + -
573B PRO* 3.2 35.4 - - + +
574B SER 3.5 2.1 + - - +
576B ALA* 1.3 78.9 - - + +
578B ALA* 1.3 63.4 + - - +
580B LEU* 3.7 3.6 - - - +
581B SER* 3.2 21.1 + - - -
1035B ALA* 5.1 13.2 - - + -
1038B THR* 4.9 13.0 - - - -
1279B GLY* 4.6 6.3 - - - -
1280B LEU* 3.4 24.2 - - - -
1281B VAL 4.4 1.8 - - - -
1282B GLY* 3.4 18.4 - - - +
1283B LEU* 3.3 44.2 - - + -
1286B THR* 4.4 13.0 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 578 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317B PRO* 4.2 25.3 - - + +
320B ILE* 5.9 3.6 - - + -
321B PHE* 5.2 14.1 - - + +
574B SER* 2.9 19.7 + - - +
575B VAL* 4.7 0.7 - - - -
577B PHE* 1.3 77.2 - - - +
579B SER* 1.3 60.7 + - - +
581B SER* 3.1 11.3 + - - -
582B LEU* 3.1 22.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 579 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452B LEU* 6.5 1.8 - - - -
455B ILE* 5.4 8.3 - - - -
459B SER* 5.7 8.3 - - - -
575B VAL* 2.6 34.5 + - - -
578B ALA* 1.3 75.5 - - - +
580B LEU* 1.3 66.4 + - - +
582B LEU* 3.3 11.1 + - - +
583B PHE* 3.1 20.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 580 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
557B ILE* 6.2 4.9 - - + -
575B VAL 3.5 0.6 + - - -
576B ALA 2.8 24.5 + - - +
577B PHE* 3.7 5.4 - - - +
579B SER* 1.3 75.8 - - - +
581B SER* 1.3 63.1 + - - +
583B PHE* 3.0 11.3 + - - +
584B HIS* 3.0 19.8 + - - +
1286B THR* 5.9 4.0 - - - -
1290B MET* 5.9 6.8 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 581 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317B PRO* 3.7 23.7 - - - +
577B PHE 3.2 11.2 + - - -
578B ALA* 3.1 13.9 - - - -
580B LEU* 1.3 77.2 - - - +
582B LEU* 1.3 62.1 + - - +
584B HIS* 3.2 17.7 + - - +
585B ILE* 3.4 11.4 + - - +
1286B THR* 5.1 11.9 - - - -
1290B MET* 5.9 2.7 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 582 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317B PRO* 4.7 6.0 - - + +
448B GLY* 5.1 13.0 - - - +
452B LEU* 5.4 9.2 - - + +
578B ALA 3.1 10.9 + - - +
579B SER* 3.5 14.6 - - - +
580B LEU 3.2 0.2 - - - -
581B SER* 1.3 75.2 - - - +
583B PHE* 1.3 63.4 + - - +
585B ILE* 3.3 10.7 + - - +
586B LEU* 3.3 18.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 583 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
553B ALA* 5.6 14.9 - - + +
557B ILE* 5.9 6.3 - - + -
579B SER 3.1 11.1 + - - +
580B LEU* 3.0 16.0 + - - +
582B LEU* 1.3 74.5 - - - +
584B HIS* 1.3 63.8 + - - +
586B LEU* 3.2 21.8 + - - +
587B VAL* 3.5 6.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with HIS 584 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
580B LEU 3.0 10.8 + - - +
581B SER* 3.2 13.2 + - - +
583B PHE* 1.3 78.7 - - - +
585B ILE* 1.3 60.5 + - - +
586B LEU 3.4 0.3 + - - -
587B VAL* 3.4 16.6 + - - +
588B THR* 4.1 4.5 + - - -
1290B MET* 4.3 28.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 585 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314B PHE* 6.6 0.4 - - - -
581B SER 3.4 7.2 + - - +
582B LEU* 3.3 13.9 + - - +
584B HIS* 1.3 77.9 - - - +
586B LEU* 1.3 50.7 + - - +
588B THR* 3.6 3.4 + - - -
589B PRO* 2.5 38.8 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 586 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
467B ILE* 5.5 10.9 - - + +
582B LEU 3.3 7.2 + - - +
583B PHE* 3.2 15.1 + - - +
585B ILE* 1.3 81.0 - - - +
587B VAL* 1.3 57.5 + - - +
589B PRO* 3.1 8.0 - - - +
590B LEU* 3.0 29.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 587 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
583B PHE 3.5 5.8 + - - +
584B HIS* 3.4 12.4 + - - +
585B ILE 3.4 0.8 - - - -
586B LEU* 1.3 77.6 - - - +
588B THR* 1.3 63.5 + - - +
590B LEU* 3.3 12.7 + - - -
591B PHE* 3.6 27.1 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with THR 588 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
584B HIS 4.1 4.0 + - - -
585B ILE* 3.6 4.4 + - - -
587B VAL* 1.3 76.4 - - - +
589B PRO* 1.3 63.2 - - - +
592B LEU* 2.7 39.3 + - - +
1297B TRP* 5.6 12.6 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with PRO 589 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441B MET* 4.6 25.6 - - + +
444B GLN* 5.2 13.0 - - + -
445B ILE* 5.5 8.3 - - + +
585B ILE 2.5 31.9 - - - +
586B LEU* 3.1 9.4 - - - +
588B THR* 1.3 88.8 - - - +
590B LEU* 1.3 51.0 + - - +
592B LEU* 4.3 4.0 - - + -
593B LEU* 2.6 39.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 590 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
467B ILE* 4.9 18.8 - - + +
470B LEU* 5.5 7.4 - - + -
471B ALA* 5.2 11.6 - - + +
474B GLN* 6.0 0.4 - - - -
586B LEU 3.0 16.2 + - - +
587B VAL* 3.3 8.6 + - - +
589B PRO* 1.3 76.0 - - - +
591B PHE* 1.3 71.6 + - + +
593B LEU* 3.0 18.0 + - - +
594B SER* 3.0 15.6 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 591 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470B LEU* 4.6 10.8 - - + -
474B GLN* 3.7 31.4 - - + -
546B MET* 4.8 17.9 - - + -
549B ALA* 3.9 29.4 - - + -
550B ILE* 5.7 3.8 - - + -
587B VAL* 3.6 22.0 + - + +
590B LEU* 1.3 85.8 - - + +
592B LEU* 1.3 60.3 + - - +
594B SER* 4.4 3.9 - - - +
595B SER* 2.9 31.5 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 592 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
437B ASN* 6.1 5.2 - - + -
438B LEU* 5.9 0.2 - - - -
441B MET* 6.1 2.5 - - + -
588B THR 2.7 26.1 + - - +
589B PRO* 4.3 3.4 - - + -
591B PHE* 1.3 79.1 - - - +
593B LEU* 1.3 56.8 + - - +
595B SER* 3.8 5.3 - - - -
596B VAL* 2.9 28.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 593 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
438B LEU* 6.4 0.4 - - - +
441B MET* 5.1 11.2 - - + -
471B ALA* 6.3 1.8 - - + -
589B PRO 2.6 25.1 + - - +
590B LEU* 3.0 6.3 + - - +
592B LEU* 1.3 75.7 - - - +
594B SER* 1.3 60.7 + - - +
596B VAL* 3.2 7.1 + - - +
597B VAL* 2.9 25.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 594 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
471B ALA* 4.2 11.2 - - - +
474B GLN* 4.3 8.5 - - - -
475B TYR* 3.8 40.8 - - - +
590B LEU 3.0 12.9 + - - -
591B PHE 4.4 2.2 - - - -
593B LEU* 1.3 73.4 - - - +
595B SER* 1.3 61.7 + - - +
597B VAL* 3.0 9.7 + - - +
598B ARG* 3.0 30.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 595 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
591B PHE 2.9 22.0 + - - -
592B LEU* 4.0 6.5 - - - -
594B SER* 1.3 76.7 - - - +
596B VAL* 1.3 58.1 + - - +
598B ARG* 3.3 21.8 + - - +
599B SER* 2.9 27.6 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 596 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
434B LEU* 5.2 5.2 - - + +
438B LEU* 3.7 30.9 - - + +
592B LEU 2.9 21.6 + - - +
593B LEU* 3.5 7.2 - - - +
594B SER 3.2 0.2 - - - -
595B SER* 1.3 73.9 - - - +
597B VAL* 1.3 60.3 + - - +
599B SER* 3.6 8.6 - - - -
600B THR* 2.9 26.9 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 597 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
475B TYR* 5.6 9.0 - - + -
593B LEU 2.9 13.4 + - - +
594B SER* 3.0 13.4 + - - +
596B VAL* 1.3 74.1 - - - +
598B ARG* 1.3 61.1 + - - +
600B THR* 3.0 8.8 + - - -
601B VAL* 2.9 25.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 598 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
430B TRP* 5.8 3.6 - - - +
475B TYR* 5.4 11.6 - - + +
478B ALA* 5.2 18.7 + - - +
479B THR* 6.2 1.0 - - - +
482B SER* 5.3 11.9 - - - -
594B SER 3.0 14.7 + - - +
595B SER* 3.3 29.3 + - - +
597B VAL* 1.3 76.1 - - - +
599B SER* 1.3 57.9 + - - +
601B VAL* 3.8 8.4 - - - +
602B LYS* 2.9 30.3 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 599 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
430B TRP* 5.0 4.0 - - - -
431B PHE* 3.5 29.4 - - - +
595B SER 2.9 21.9 + - - -
596B VAL* 3.6 11.0 - - - -
598B ARG* 1.3 80.6 - - - +
600B THR* 1.3 55.7 + - - +
602B LYS* 3.7 4.2 - - - -
603B ALA* 2.9 27.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR 600 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
596B VAL 2.9 14.8 + - - -
597B VAL* 3.0 10.9 + - - -
599B SER* 1.3 76.1 - - - +
601B VAL* 1.3 59.5 + - - +
603B ALA* 3.3 8.0 - - - +
604B LEU* 2.9 28.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 601 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
597B VAL 2.9 12.7 + - - +
598B ARG* 3.4 11.2 + - - +
599B SER 3.4 0.2 - - - -
600B THR* 1.3 77.3 - - - +
602B LYS* 1.3 56.2 + - - +
604B LEU* 3.4 6.4 + - - +
605B VAL* 2.9 27.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 602 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427B GLN* 5.1 9.8 - - + +
431B PHE* 4.6 6.2 - - + +
598B ARG 2.9 19.5 + - - +
599B SER* 4.1 5.8 - - - +
601B VAL* 1.3 75.5 - - - +
603B ALA* 1.3 57.8 + - - +
605B VAL* 3.9 6.9 - - - +
606B SER* 2.9 30.3 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 603 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288B TRP* 4.2 20.4 - - + -
428B LEU* 5.7 0.4 - - - +
431B PHE* 3.8 20.2 - - + +
599B SER 2.9 20.6 + - - +
600B THR* 3.3 11.0 - - - +
601B VAL 3.1 0.6 - - - -
602B LYS* 1.3 75.2 - - - +
604B LEU* 1.3 59.6 + - - +
606B SER* 3.3 3.9 + - - -
607B VAL* 2.9 30.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 604 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288B TRP* 5.4 2.0 - - - -
600B THR 2.9 15.8 + - - +
601B VAL* 3.9 5.4 - - - +
603B ALA* 1.3 75.8 - - - +
605B VAL* 1.3 58.1 + - - +
607B VAL* 3.9 4.9 - - - +
608B GLN* 2.9 29.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 605 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
601B VAL 2.9 18.1 + - - +
602B LYS* 3.9 8.1 - - - +
604B LEU* 1.3 77.9 - - - +
606B SER* 1.3 56.6 + - - +
608B GLN* 3.3 7.2 + - - +
609B LYS* 2.9 28.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 606 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
424B ASP* 3.7 32.1 - - - +
427B GLN* 5.0 2.5 - - - -
428B LEU* 3.8 21.0 - - - +
602B LYS 2.9 19.3 + - - -
603B ALA* 3.8 4.0 - - - -
605B VAL* 1.3 75.7 - - - +
607B VAL* 1.3 60.2 + - - +
609B LYS* 3.4 6.4 + - - +
610B LEU* 2.9 27.6 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 607 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
284B ALA* 4.7 10.5 - - + +
288B TRP* 3.6 31.0 - - + -
603B ALA 2.9 17.4 + - - +
604B LEU* 4.1 4.7 - - - +
606B SER* 1.3 73.5 - - - +
608B GLN* 1.3 61.0 + - - +
610B LEU* 3.7 7.8 - - - +
611B SER* 2.9 29.6 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLN 608 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
284B ALA* 5.6 3.1 - - - -
604B LEU 2.9 20.6 + - - +
605B VAL* 3.5 8.5 - - - +
606B SER 3.2 0.2 - - - -
607B VAL* 1.3 78.4 - - - +
609B LYS* 1.3 56.0 + - - +
611B SER* 3.4 6.4 + - - -
612B GLU* 2.9 27.8 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 609 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
420B LEU* 5.9 3.6 - - + +
424B ASP* 4.9 12.3 - - + -
605B VAL 2.9 16.0 + - - +
606B SER* 3.8 7.0 - - - +
608B GLN* 1.3 74.5 - - - +
610B LEU* 1.3 60.2 + - - +
612B GLU* 3.4 8.1 + - - +
613B PHE* 2.9 27.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 610 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
606B SER 2.9 18.3 + - - +
607B VAL* 3.7 9.2 - - - +
608B GLN 3.3 0.2 - - - -
609B LYS* 1.3 74.1 - - - +
611B SER* 1.3 59.1 + - - +
613B PHE* 3.2 9.3 + - - +
614B LEU* 2.9 26.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 611 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
283B GLY 5.0 1.3 - - - -
284B ALA* 3.6 34.8 - - - -
287B ILE* 6.2 1.1 - - - -
607B VAL 2.9 17.8 + - - -
608B GLN* 3.9 4.5 - - - -
610B LEU* 1.3 74.3 - - - +
612B GLU* 1.3 63.6 + - - +
614B LEU* 3.2 20.6 + - - +
615B SER* 3.9 5.2 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 612 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
608B GLN 2.9 18.5 + - - +
609B LYS* 3.6 9.2 - - - +
610B LEU 3.2 0.2 - - - -
611B SER* 1.3 78.3 - - - +
613B PHE* 1.3 59.6 + - - +
614B LEU 3.6 0.2 + - - -
615B SER* 3.8 13.9 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with PHE 613 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
395B ILE* 4.2 28.3 - - + -
398B LYS* 5.2 5.2 - - + -
399B ILE* 3.7 42.0 - - + -
417B ILE* 4.4 31.0 - - + -
421B VAL* 5.8 7.0 - - + -
609B LYS 2.9 16.9 + - - +
610B LEU* 3.2 8.0 + - - +
612B GLU* 1.3 72.2 - - - +
614B LEU* 1.3 64.6 + - - +
615B SER 3.1 10.1 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 614 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
282B GLN* 5.7 8.5 - - + -
610B LEU 2.9 13.2 + - - +
611B SER* 3.2 18.2 + - - +
613B PHE* 1.3 77.9 - - - +
615B SER* 1.3 63.1 + - - +
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il