Contacts of the helix formed by residues 845 - 881 (chain D) in PDB entry 5UH6
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 845 (chain D).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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543C GLN* 4.9 7.4 - - - -
560C LEU* 6.2 4.9 - - + -
977C PHE* 5.0 1.3 - - - -
838D SER* 4.4 8.7 - - - +
843D GLY 5.3 0.9 - - - +
844D LEU* 1.3 78.9 - - - +
846D VAL* 1.3 66.2 + - - +
847D LEU* 4.0 3.4 + - - +
848D GLU* 3.1 38.2 + - - +
849D TYR* 3.0 22.0 + - - +
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Residues in contact with VAL 846 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
480C TYR* 4.0 22.2 - - + +
543C GLN* 3.3 24.9 - - + +
545C ASN* 5.7 3.1 - - + +
583C PRO* 4.3 16.2 - - + +
586C MET* 3.6 26.3 - - - +
977C PHE* 3.7 37.9 - - + +
845D THR* 1.3 73.7 - - - +
847D LEU* 1.3 67.4 + - + +
849D TYR* 3.1 14.4 + - - +
850D PHE* 3.2 11.6 + - - +
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Residues in contact with LEU 847 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
480C TYR* 4.7 6.1 - - + +
543C GLN* 3.7 36.4 - - + +
560C LEU* 5.9 2.7 - - + -
561C VAL 4.8 2.5 - - - +
562C ARG* 4.0 42.0 - - + +
568C VAL* 3.5 40.4 - - + -
834D ARG* 2.6 27.4 + - - +
845D THR* 3.6 3.6 + - - +
846D VAL* 1.3 83.4 - - + +
848D GLU* 1.3 60.7 + - - +
850D PHE* 3.6 9.0 + - + +
851D ILE* 3.5 14.4 + - - +
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Residues in contact with GLU 848 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
834D ARG* 3.3 16.2 - - - +
835D PRO 4.1 3.2 - - - +
836D VAL* 3.4 33.2 - - + +
837D LYS* 3.3 23.6 + - - +
838D SER* 3.3 22.0 + - - -
844D LEU* 3.7 5.3 - - + +
845D THR* 3.1 43.1 + - - +
846D VAL 3.1 0.6 - - - -
847D LEU* 1.3 77.2 - - - +
849D TYR* 1.3 65.7 + - - +
851D ILE* 3.2 6.9 - - - +
852D ASN* 3.0 24.1 + - - +
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Residues in contact with TYR 849 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
486C ILE* 3.6 19.3 - - + -
586C MET* 5.0 7.6 - - + -
597C LEU* 3.3 33.2 + - + +
598C GLU* 3.6 21.8 - - + -
600C ASP 2.7 24.0 + - - -
601C ASP* 4.1 1.8 - - - -
602C ALA* 4.7 7.2 - - + -
605C ALA* 3.4 18.9 - - - +
977C PHE* 4.1 19.7 - + + -
840D PHE* 5.5 3.8 - + - -
844D LEU* 4.8 12.3 - - + +
845D THR 3.0 11.9 + - - +
846D VAL 3.1 10.1 + - - +
848D GLU* 1.3 77.8 - - - +
850D PHE* 1.3 49.8 + - - +
852D ASN* 3.5 10.2 - - - +
853D THR* 2.5 69.7 + - - -
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Residues in contact with PHE 850 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
475C VAL* 3.5 25.8 - - + +
476C HIS 3.6 23.1 - - - -
477C PRO* 4.3 8.5 - - + -
479C HIS* 4.2 4.9 - - + -
480C TYR* 3.8 48.5 - + + -
485C PRO* 4.2 14.8 - - + -
562C ARG* 5.8 6.1 - - - +
586C MET* 3.5 23.5 - - + +
846D VAL 3.2 9.3 + - - +
847D LEU* 3.8 14.1 - - + +
848D GLU 3.2 0.6 - - - -
849D TYR* 1.3 78.9 - - - +
851D ILE* 1.3 59.8 + - - +
853D THR* 3.3 8.3 + - - -
854D HIS* 3.0 26.2 + - + +
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Residues in contact with ILE 851 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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824D VAL* 3.7 33.8 - - + +
825D THR 5.2 5.4 - - - +
827D PRO* 6.5 1.3 - - + -
832D ILE* 3.7 28.9 - - + -
834D ARG* 3.7 27.8 - - - +
836D VAL* 5.0 4.9 - - + -
847D LEU 3.5 11.4 + - - +
848D GLU* 3.2 13.5 - - - +
850D PHE* 1.3 79.0 - - + +
852D ASN* 1.3 67.6 + - - +
854D HIS* 3.4 11.6 - - + +
855D GLY* 3.3 17.5 + - - -
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Residues in contact with ASN 852 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
601C ASP* 4.1 13.8 + - - +
602C ALA* 4.8 6.0 - - - +
821D LYS* 3.6 29.3 + - - +
824D VAL* 4.7 12.4 - - + +
836D VAL* 5.6 1.8 - - + -
840D PHE* 3.9 26.7 - - - -
844D LEU* 4.4 9.7 - - + +
848D GLU 3.0 19.3 + - - +
849D TYR* 3.5 12.5 + - - +
851D ILE* 1.3 79.0 - - + +
853D THR* 1.3 63.1 + - - +
855D GLY* 3.3 3.5 + - - -
856D ALA* 3.0 21.5 + - - +
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Residues in contact with THR 853 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
475C VAL* 4.2 3.4 - - + -
485C PRO* 3.1 39.6 - - + +
486C ILE* 3.7 13.9 - - + +
602C ALA* 3.9 14.8 - - + +
849D TYR* 2.5 49.0 + - - -
850D PHE* 3.4 7.8 - - - -
852D ASN* 1.3 74.4 - - - +
854D HIS* 1.3 65.7 + - - +
856D ALA* 3.1 2.4 + - - +
857D ARG* 3.0 24.3 + - + +
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Residues in contact with HIS 854 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
474C ASP* 4.2 23.6 + - - +
475C VAL* 2.4 49.8 + - + +
477C PRO* 5.6 3.5 - - + +
825D THR 4.8 5.4 - - - -
826D ASN 5.2 0.2 - - - -
827D PRO* 3.1 46.9 - - + +
850D PHE* 3.0 15.3 + - + +
851D ILE* 3.4 17.7 - - + +
853D THR* 1.3 77.2 - - - +
855D GLY* 1.3 68.7 + - - +
857D ARG* 3.5 2.9 + - - +
858D LYS* 3.3 22.1 + - + +
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Residues in contact with GLY 855 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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824D VAL* 6.5 0.7 - - - -
825D THR* 4.3 21.6 + - - -
851D ILE 3.3 5.8 + - - -
852D ASN 3.3 6.0 + - - -
853D THR 3.3 0.6 - - - -
854D HIS* 1.3 86.3 - - - +
856D ALA* 1.3 62.6 + - - +
857D ARG 3.2 0.2 + - - -
858D LYS* 3.2 7.2 + - - +
859D GLY* 2.9 21.0 + - - -
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Residues in contact with ALA 856 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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601C ASP* 4.5 2.9 - - - +
602C ALA* 3.6 24.5 - - + -
603C ASN* 3.8 21.7 - - - +
852D ASN* 3.0 19.5 + - - +
853D THR 3.1 5.1 + - - +
855D GLY* 1.3 75.0 - - - +
857D ARG* 1.3 57.3 + - - +
859D GLY* 3.4 3.1 + - - +
860D LEU* 3.1 31.0 + - + +
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Residues in contact with ARG 857 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
473C ARG* 3.4 30.6 + - + -
474C ASP* 4.2 9.9 + - - +
475C VAL* 3.7 16.3 - - + +
479C HIS* 5.8 4.0 - - - -
483C MET* 5.2 8.7 - - - +
484C CYS 4.0 6.3 + - - -
485C PRO* 2.5 42.6 + - - +
486C ILE 3.8 1.4 + - - +
487C GLU 5.3 0.2 + - - -
488C THR* 3.8 27.1 - - + +
494C ILE* 3.9 17.7 - - + -
495C GLY* 3.8 19.0 + - - -
606C LEU* 5.2 4.8 - - + +
853D THR* 3.0 15.5 + - + +
854D HIS 4.0 2.9 - - - +
856D ALA* 1.3 74.2 - - - +
858D LYS* 1.3 55.5 + - - +
859D GLY 3.1 1.3 - - - -
860D LEU* 2.9 11.9 + - + +
861D ALA* 2.7 35.2 + - + +
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Residues in contact with LYS 858 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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470C LEU* 5.1 15.7 - - + +
474C ASP* 4.4 24.6 - - + +
825D THR* 5.8 3.6 - - - +
826D ASN 4.9 7.1 + - - +
827D PRO* 3.9 25.7 + - + +
828D LYS 4.8 7.1 + - - -
829D GLY* 5.0 4.2 - - - -
854D HIS* 3.3 15.4 + - + +
855D GLY* 3.2 10.2 + - - +
857D ARG* 1.3 78.2 - - - +
859D GLY* 1.3 57.3 + - - +
861D ALA* 3.5 9.3 - - + +
862D ASP* 2.9 51.0 + - - +
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Residues in contact with GLY 859 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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855D GLY 2.9 13.8 + - - -
856D ALA* 3.7 5.4 - - - -
857D ARG 3.1 0.2 - - - -
858D LYS* 1.3 77.7 - - - +
860D LEU* 1.3 53.0 + - - +
862D ASP* 3.3 5.1 + - - +
863D THR* 2.5 39.2 + - - -
866D ARG* 5.1 0.3 + - - -
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Residues in contact with LEU 860 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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490C GLU* 5.2 17.0 - - + +
494C ILE* 3.6 19.5 - - + +
602C ALA 5.4 0.4 - - - +
603C ASN* 3.3 35.0 - - + +
606C LEU* 4.3 24.7 - - + -
607C MET* 6.2 2.9 - - + -
856D ALA 3.1 13.0 + - - +
857D ARG* 2.9 11.8 + - - +
859D GLY* 1.3 74.4 - - - +
861D ALA* 1.3 61.6 + - - +
863D THR* 3.3 11.8 + - + +
864D ALA* 3.1 22.9 + - - +
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Residues in contact with ALA 861 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470C LEU* 4.3 19.0 - - + +
473C ARG* 4.7 20.0 - - + +
474C ASP* 6.2 1.1 - - + +
494C ILE* 4.2 16.5 - - + +
857D ARG* 2.7 17.5 + - + +
858D LYS* 3.5 15.7 - - + +
860D LEU* 1.3 74.9 - - - +
862D ASP* 1.3 62.8 + - - +
864D ALA* 3.1 13.5 + - - +
865D LEU* 3.2 13.7 + - - +
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Residues in contact with ASP 862 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470C LEU* 3.4 32.1 - - - +
858D LYS* 2.9 35.6 + - - +
859D GLY* 3.9 4.9 - - - +
861D ALA* 1.3 71.6 - - - +
863D THR* 1.3 66.4 + - - +
864D ALA 3.0 1.8 - - - -
865D LEU* 3.8 6.9 - - - +
866D ARG* 3.0 46.2 + - + +
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Residues in contact with THR 863 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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859D GLY 2.5 25.5 + - - -
860D LEU* 3.6 14.9 - - + +
861D ALA 3.3 0.2 - - - -
862D ASP* 1.3 76.4 - - - +
864D ALA* 1.3 59.7 + - - +
866D ARG* 3.9 24.4 + - - +
867D THR* 3.3 25.1 + - + +
1008D THR* 4.8 7.0 - - + +
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Residues in contact with ALA 864 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
490C GLU 5.9 0.9 - - - +
491C GLY 4.7 15.7 - - - +
492C PRO* 5.6 4.0 - - + -
494C ILE* 5.2 4.0 - - + -
860D LEU 3.1 11.8 + - - +
861D ALA* 3.3 12.1 - - - +
862D ASP 3.0 0.6 - - - -
863D THR* 1.3 78.9 - - - +
865D LEU* 1.3 59.7 + - - +
867D THR* 2.4 23.4 + - - -
868D ALA* 3.7 6.8 + - - +
14G G 4.8 7.8 - - - +
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Residues in contact with LEU 865 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
470C LEU* 4.3 28.3 - - + -
861D ALA 3.2 13.0 + - - +
862D ASP* 3.1 8.6 + - - +
864D ALA* 1.3 76.5 - - - +
866D ARG* 1.3 63.8 + - + +
868D ALA* 3.4 12.8 + - + +
869D ASP* 3.3 31.1 + - - +
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Residues in contact with ARG 866 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
859D GLY 5.1 0.2 + - - -
862D ASP* 3.0 46.1 + - + +
863D THR* 3.9 25.1 + - - +
865D LEU* 1.3 73.2 - - + +
867D THR* 1.3 55.9 + - - +
869D ASP* 3.0 11.1 + - - +
870D SER* 2.6 38.0 + - - -
1008D THR* 2.7 39.6 + - + +
1009D GLN* 4.6 3.0 - - - +
1010D LEU* 3.5 31.1 + - - +
1011D THR 5.5 4.3 - - - -
1028D LEU* 4.0 17.3 - - + +
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Residues in contact with THR 867 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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863D THR* 3.3 17.6 + - + +
864D ALA* 2.4 28.8 + - - -
866D ARG* 1.3 77.9 - - - +
868D ALA* 1.3 62.1 + - - -
870D SER* 3.4 7.0 + - - -
871D GLY* 3.0 21.7 + - - -
1008D THR* 3.6 24.5 - - + +
14G G 3.9 35.9 + - + +
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Residues in contact with ALA 868 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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864D ALA 4.3 5.6 - - - +
865D LEU* 3.4 17.4 + - + +
866D ARG 3.3 0.2 - - - -
867D THR* 1.3 81.5 + - - +
869D ASP* 1.3 65.9 + - - +
872D TYR* 3.2 18.4 + - - +
13G A 4.2 11.5 - - + +
14G G 3.6 45.9 - - + +
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Residues in contact with ASP 869 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
865D LEU* 3.3 25.0 + - - +
866D ARG* 3.0 10.2 + - - +
868D ALA* 1.3 78.3 - - - +
870D SER* 1.3 60.6 + - - +
872D TYR* 2.8 10.9 + - - +
873D LEU* 2.8 29.0 + - - +
876D ARG* 4.7 1.7 + - - -
1028D LEU* 3.9 16.1 - - + +
1032D GLN* 4.0 14.9 + - - +
13G A 5.7 6.1 - - - +
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Residues in contact with SER 870 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
866D ARG 2.6 20.6 + - - -
867D THR* 3.7 5.4 - - - -
869D ASP* 1.3 72.8 - - - +
871D GLY* 1.3 52.4 + - - +
873D LEU* 3.7 11.1 + - - +
874D THR* 2.7 34.7 + - - -
1004D GLY* 3.3 18.9 + - - +
1007D GLY* 3.5 29.8 - - - -
1008D THR* 3.8 12.0 + - - -
1028D LEU* 3.9 7.1 - - - +
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Residues in contact with GLY 871 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1071C MET* 4.8 13.9 - - - +
1074C TRP* 5.7 0.2 - - - -
504D LEU* 6.5 0.7 - - - -
867D THR 3.0 15.8 + - - -
870D SER* 1.3 74.8 - - - +
872D TYR* 1.3 65.2 + - - +
874D THR* 3.2 9.3 + - - -
875D ARG* 3.2 21.7 + - - +
14G G 4.0 19.1 - - - -
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Residues in contact with TYR 872 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
868D ALA 3.2 12.7 + - - +
869D ASP* 2.8 10.8 + - - +
871D GLY* 1.3 77.9 - - - +
873D LEU* 1.3 61.8 + - - +
875D ARG* 3.1 31.7 + - + +
876D ARG* 3.2 65.9 + - + -
1032D GLN* 5.9 0.7 - - - -
1211D THR* 4.9 2.3 + - - +
1227D GLN* 2.3 38.6 + - - -
12G G 3.9 11.7 + - + +
13G A 3.5 44.6 - - - -
14G G 4.3 6.6 - - - -
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Residues in contact with LEU 873 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
869D ASP 2.8 13.9 + - - +
870D SER* 3.8 9.2 - - - +
872D TYR* 1.3 75.7 - - - +
874D THR* 1.3 62.6 + - - +
876D ARG* 3.2 32.1 + - - +
877D LEU* 3.1 49.0 + - + +
1003D ILE* 5.2 0.4 - - + +
1004D GLY* 5.1 7.9 - - - -
1007D GLY* 5.6 2.5 - - - -
1028D LEU* 3.9 26.7 - - + -
1031D VAL* 4.3 5.2 - - + -
1032D GLN* 4.6 15.9 - - + +
1035D PHE* 4.2 17.9 - - + -
1142D TYR* 4.3 15.7 - - - +
1210D ILE* 4.7 5.8 - - + -
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Residues in contact with THR 874 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1071C MET* 5.5 5.2 - - + -
1074C TRP* 4.2 19.5 - - + -
504D LEU* 5.3 8.1 - - + +
870D SER 2.7 20.3 + - - -
871D GLY* 3.3 13.9 - - - -
872D TYR 3.1 0.2 - - - -
873D LEU* 1.3 78.0 - - - +
875D ARG* 1.3 57.6 + - - +
877D LEU* 3.3 12.9 + - - +
878D VAL* 3.0 35.8 + - + +
1000D ALA* 4.6 6.5 - - - +
1001D GLN* 5.0 7.6 - - + -
1004D GLY* 3.2 29.5 + - - -
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Residues in contact with ARG 875 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1070C GLU* 2.9 28.1 + - - -
1071C MET* 6.4 0.2 - - + -
1074C TRP* 3.5 27.2 - - + -
414D ARG* 3.1 47.3 - - - +
871D GLY 3.2 5.3 + - - +
872D TYR* 3.1 35.6 + - + +
874D THR* 1.3 76.8 - - - +
876D ARG* 1.3 72.8 + - + +
878D VAL* 3.4 2.5 + - - +
879D ASP* 3.2 20.3 + - - +
1225D SER 4.0 14.5 + - - -
1226D PHE* 3.5 30.8 + - + +
1227D GLN* 4.3 11.1 + - - +
1249D LYS* 4.9 3.4 - - - +
13G A 4.2 3.6 + - - -
14G G 6.2 2.9 - - - -
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Residues in contact with ARG 876 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
869D ASP 4.7 0.2 + - - -
872D TYR* 3.2 58.6 + - + +
873D LEU* 3.2 39.9 - - - +
875D ARG* 1.3 75.7 - - + +
877D LEU* 1.3 63.5 + - - +
879D ASP* 3.0 14.2 + - - +
880D VAL* 3.1 13.9 + - - +
1032D GLN* 3.6 32.9 + - - +
1036D GLU* 3.2 34.8 + - - +
1038D ARG* 5.7 2.2 - - - +
1210D ILE* 3.8 17.6 - - + +
1211D THR* 3.6 8.5 + - - +
1214D SER* 4.1 2.9 + - - -
1226D PHE* 4.1 21.5 - - + -
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Residues in contact with LEU 877 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
873D LEU* 3.1 35.6 + - + +
874D THR* 3.4 9.6 - - - +
876D ARG* 1.3 76.9 - - - +
878D VAL* 1.3 62.8 + - - +
880D VAL* 3.2 15.7 - - - +
881D SER* 3.0 17.7 + - - -
1000D ALA* 3.7 19.9 - - + +
1003D ILE* 4.2 28.3 - - + -
1004D GLY 4.7 1.8 - - - +
1035D PHE* 4.0 15.9 - - + -
1157D ILE* 3.7 29.8 - - + +
1210D ILE* 3.7 20.9 - - + -
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Residues in contact with VAL 878 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1074C TRP* 3.7 57.0 - - + +
874D THR* 3.0 21.2 + - + +
875D ARG 3.7 7.4 - - - +
876D ARG 3.3 0.2 - - - -
877D LEU* 1.3 77.2 - - - +
879D ASP* 1.3 61.4 + - + +
881D SER* 3.5 2.6 + - - +
882D GLN* 3.2 36.5 + - + +
996D GLY 5.4 0.2 - - - -
997D ILE* 4.4 14.6 - - + +
1000D ALA* 3.6 20.4 - - + -
1001D GLN* 5.0 2.7 - - + +
1249D LYS* 5.7 1.3 - - - +
----------------------------------------------------------
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Residues in contact with ASP 879 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
875D ARG 3.2 4.6 + - - +
876D ARG 3.0 4.7 + - - +
878D VAL* 1.3 83.2 - - - +
880D VAL* 1.3 61.1 + - - +
881D SER 3.3 0.9 + - - -
882D GLN* 3.8 15.0 + - - +
883D ASP* 5.7 0.2 - - - +
1214D SER* 3.3 24.2 + - - +
1217D THR* 5.6 0.5 - - - +
1222D SER* 3.9 12.7 + - - +
1226D PHE* 3.3 35.2 - - + -
1249D LYS* 2.5 41.1 + - - +
----------------------------------------------------------
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Residues in contact with VAL 880 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
876D ARG 3.1 8.3 + - - +
877D LEU* 3.2 20.0 - - - +
879D ASP* 1.3 76.9 - - - +
881D SER* 1.3 61.2 + - - +
882D GLN 3.7 0.6 + - - -
883D ASP 5.5 0.3 + - - -
884D VAL* 4.9 0.2 - - - +
1157D ILE* 4.0 17.3 - - + +
1160D GLN* 3.7 32.9 + - + +
1161D MET* 5.7 0.4 - - + -
1210D ILE* 3.7 39.3 - - + +
1213D ALA* 4.1 15.3 - - + -
1214D SER* 3.2 20.1 + - - +
----------------------------------------------------------
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Residues in contact with SER 881 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
877D LEU 3.0 13.8 + - - -
878D VAL 3.6 4.8 + - - +
879D ASP 3.1 0.6 - - - -
880D VAL* 1.3 81.8 - - - +
882D GLN* 1.3 59.3 + - - +
883D ASP 3.6 1.1 - - - -
884D VAL* 3.9 16.9 - - - +
996D GLY* 2.5 55.3 + - - -
997D ILE 3.6 0.3 + - - -
1000D ALA* 4.0 0.9 - - - +
1156D VAL* 4.5 8.1 - - - -
1157D ILE* 3.6 21.8 - - - +
1160D GLN* 4.7 0.4 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il